Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008428.1 Hibiscus syriacus cultivar Beakdansim tig00111213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6915314

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  30  of  30  ( 3508 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6865755--6865796
20
2.2
19
84
12
59
26
28
7
38
1.82
6868600--6868637
18
2.1
19
90
5
60
44
0
23
31
1.54
6868647--6868705
27
2.2
27
78
6
66
44
13
16
25
1.85
6873334--6873358
13
1.9
13
100
0
50
48
4
8
40
1.51
6873456--6873697
118
2.0
119
94
0
423
34
9
12
43
1.75
6876090--6876125
2
18.5
2
94
5
65
50
0
0
50
1.00
6879618--6879987
185
2.0
185
99
0
731
28
13
19
38
1.90
6880263--6880287
5
5.0
5
100
0
50
0
20
40
40
1.52
6880379--6880442
18
3.6
18
70
8
58
50
26
15
7
1.71
6880880--6880916
18
2.0
19
89
5
58
35
10
5
48
1.61
6880915--6881004
29
3.0
29
67
12
83
33
25
1
40
1.63
6880898--6881023
60
2.1
60
86
5
175
34
21
2
41
1.66
6881296--6881340
20
2.2
20
88
0
63
40
11
22
26
1.87
6881669--6881783
60
1.9
60
83
3
151
41
5
22
30
1.76
6884472--6884510
19
2.0
20
95
5
71
25
15
25
33
1.95
6884740--6884808
29
2.3
29
80
7
77
50
5
7
36
1.54
6884817--6884921
29
3.6
29
81
6
106
53
7
6
32
1.55
6886031--6886109
21
3.8
21
89
0
113
22
39
29
8
1.84
6887584--6887643
23
2.7
23
86
2
86
18
21
8
51
1.72
6891620--6891685
32
2.1
32
88
8
100
34
9
12
43
1.73
6892733--6892889
58
2.7
59
85
4
192
34
17
5
42
1.74
6893150--6893315
60
2.8
60
86
3
201
31
20
6
41
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6893572--6893756
60
3.1
59
77
7
187
33
20
4
42
1.71
6892904--6894202
441
2.9
441
95
0
2285
36
15
11
36
1.84
6894010--6894197
60
3.2
60
77
7
188
32
18
5
43
1.74
6896394--6896469
36
2.1
36
97
0
143
31
10
14
43
1.79
6901388--6901463
36
2.1
36
97
0
143
31
10
14
43
1.79
6903710--6903786
36
2.2
36
85
2
102
16
10
42
29
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30

The End!