genome.fa.s8428.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008428.1 Hibiscus syriacus cultivar Beakdansim tig00111213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6915314

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  20  of  30  ( 3508 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4562676--4562814	64	2.2	64	85	3	181	29	12	19	38	1.89
4563074--4563162	32	2.8	32	76	6	99	31	24	14	29	1.95
4564175--4564223	22	2.3	21	79	10	55	4	16	4	75	1.11
4571921--4572183	141	1.8	141	83	7	343	51	5	10	32	1.59
4578644--4578677	17	2.1	16	88	5	50	76	0	8	14	1.01
4587712--4587745	17	2.1	16	88	5	50	76	0	8	14	1.01
4589332--4589386	24	2.3	24	83	0	74	36	1	29	32	1.68
4589484--4589797	169	1.9	167	84	8	422	30	15	20	34	1.93
4589982--4590159	32	5.6	32	82	4	216	53	16	7	22	1.67
4590841--4590870	14	2.1	14	93	0	51	50	20	0	30	1.49
4592182--4592206	2	12.5	2	100	0	50	48	0	0	52	1.00
4592119--4592250	72	1.9	70	96	3	246	52	4	3	40	1.37
4594122--4594171	24	2.1	24	92	0	82	32	38	2	28	1.68
4597633--4597714	33	2.7	30	81	12	87	45	0	3	51	1.19
4597754--4597821	23	3.0	22	74	8	55	45	1	2	50	1.26
4597792--4597955	8	20.6	8	68	18	58	48	1	1	48	1.17
4597879--4597931	23	2.3	23	87	6	72	43	1	1	52	1.23
4597921--4597967	22	2.1	23	88	4	69	53	0	2	44	1.12
4597929--4597972	22	2.0	22	82	8	54	54	0	2	43	1.12
4597978--4598020	14	3.1	13	78	18	50	46	0	2	51	1.13
4611366--4611484	29	4.0	29	86	7	157	42	28	14	14	1.84
4616992--4617061	34	2.1	34	100	0	140	47	5	27	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4619196--4619231	17	2.1	17	89	0	54	44	13	11	30	1.79
4621150--4621178	5	5.8	5	100	0	58	17	0	0	82	0.66
4621078--4621398	125	2.6	123	90	5	509	23	17	14	44	1.86
4621276--4621302	14	1.9	14	100	0	54	18	0	0	81	0.69
4621414--4621512	35	2.9	33	82	8	121	26	16	4	53	1.60
4626028--4626294	90	3.0	90	94	1	457	46	4	11	37	1.61
4627635--4627663	13	2.2	13	100	0	58	79	6	13	0	0.93
4629642--4629691	26	1.9	26	95	0	91	44	12	10	34	1.75
4629687--4630821	220	5.2	220	85	1	1481	33	26	14	25	1.94
4630660--4630957	121	2.5	122	84	6	356	33	24	14	27	1.94
4632201--4632496	115	2.6	115	91	1	488	23	20	16	39	1.92
4632512--4632610	35	2.9	33	80	5	110	28	15	3	53	1.56
4640000--4640030	16	1.9	16	93	0	53	45	16	16	22	1.85
4642000--4642030	5	6.2	5	92	0	53	25	0	74	0	0.82
4643750--4643790	16	2.6	16	88	0	64	26	24	29	19	1.98
4643992--4644054	31	2.0	31	100	0	126	31	28	6	33	1.82
4647721--4647801	34	2.4	34	95	0	144	59	0	0	40	0.98
4647733--4647787	25	2.2	25	80	6	67	61	0	0	38	0.96
4647749--4647820	18	4.1	17	71	16	58	59	0	0	40	0.97
4647751--4647816	22	3.0	21	78	17	71	57	0	0	42	0.98
4649789--4649829	21	2.0	21	85	0	55	70	0	0	29	0.87
4649799--4649844	21	2.2	21	88	7	67	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4649831--4649864	17	2.0	17	100	0	68	35	0	5	58	1.22
4649930--4649973	17	2.5	18	81	7	54	36	0	4	59	1.18
4649957--4650021	28	2.4	27	74	20	64	32	0	4	63	1.15
4657309--4657376	28	2.2	33	75	19	76	50	5	1	42	1.35
4659378--4659874	255	1.9	255	96	0	922	33	18	10	37	1.85
4661690--4661742	21	2.5	21	81	6	72	20	26	18	33	1.96
4661732--4661846	21	5.5	21	94	1	187	38	16	23	21	1.93
4661835--4661949	20	5.7	20	77	6	97	34	26	14	23	1.94
4661832--4661969	41	3.4	41	78	4	163	36	25	14	23	1.93
4662136--4662179	22	2.0	22	90	0	70	22	45	15	15	1.85
4662442--4662500	20	3.0	20	82	5	57	15	18	22	44	1.87
4662637--4662691	25	2.2	24	78	15	58	20	9	18	52	1.71
4663816--4663863	18	2.7	18	90	0	78	27	43	12	16	1.84
4664267--4664573	152	2.0	153	99	0	607	28	12	16	42	1.84
4664622--4664674	19	2.8	19	91	0	88	47	16	20	15	1.83
4664681--4664746	19	3.7	19	75	19	79	12	19	21	46	1.82
4664731--4664785	20	2.8	19	83	8	65	18	25	21	34	1.96
4665142--4665202	21	3.0	20	73	7	68	22	42	13	21	1.87
4665142--4665226	38	2.1	38	87	8	116	22	41	15	21	1.90
4665139--4665226	42	2.2	40	86	8	126	21	40	15	21	1.90
4665142--4665240	38	2.5	39	83	8	103	22	38	18	21	1.93
4666713--4666752	20	2.0	20	85	9	55	47	20	17	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4666746--4666795	14	3.0	17	75	24	61	48	18	22	12	1.80
4666785--4666868	19	4.6	19	69	16	70	16	21	20	41	1.90
4666822--4666908	20	4.4	20	82	2	122	14	21	24	39	1.91
4666823--4666908	39	2.2	40	87	2	120	15	22	23	39	1.91
4666791--4666910	59	2.2	53	88	8	168	15	20	21	42	1.88
4667123--4667172	20	2.5	20	80	0	73	22	18	22	38	1.94
4667137--4667200	20	3.2	20	76	12	67	21	18	20	39	1.93
4668252--4668285	12	2.8	12	100	0	68	76	0	23	0	0.79
4670562--4670692	19	7.7	19	66	23	94	45	18	22	12	1.83
4670562--4670688	33	3.8	33	92	0	209	45	18	22	13	1.84
4670698--4670806	33	3.3	33	92	0	164	13	20	19	46	1.83
4670917--4670953	14	2.6	14	91	0	65	45	24	0	29	1.53
4672305--4672371	21	3.2	21	68	4	55	19	19	35	25	1.95
4672305--4672393	42	2.1	42	83	8	110	20	19	35	24	1.95
4672336--4672423	42	2.1	42	82	0	104	25	15	36	22	1.94
4672645--4672829	91	2.0	91	91	6	302	46	18	12	21	1.83
4674494--4674554	20	3.1	19	79	9	68	45	19	22	11	1.82
4674549--4674595	25	1.9	24	95	4	85	46	21	25	6	1.74
4675193--4675304	20	5.6	20	82	4	73	21	19	20	38	1.94
4675211--4675304	41	2.3	40	87	1	125	20	20	19	40	1.92
4675301--4675356	20	2.7	21	80	5	69	42	16	21	19	1.89
4675300--4675366	21	3.2	21	78	4	73	38	16	22	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4675379--4675427	20	2.4	20	86	3	62	22	22	16	38	1.92
4675211--4675442	41	5.7	40	71	7	110	27	18	19	34	1.96
4675417--4675469	21	2.5	22	81	6	74	33	18	26	20	1.96
4676131--4676269	60	2.3	59	79	7	147	46	4	17	30	1.68
4676159--4676279	60	2.0	59	85	1	161	44	3	18	33	1.66
4676679--4676719	15	2.6	17	77	18	52	36	0	2	60	1.10
4676998--4677045	21	2.3	20	82	10	60	43	2	0	54	1.12
4680238--4680476	117	2.0	118	91	7	385	27	14	22	35	1.93
4680920--4680997	38	2.0	39	92	2	131	48	1	21	28	1.58
4681132--4681196	32	2.0	32	96	0	121	53	9	21	15	1.69
4683814--4684121	154	2.0	154	100	0	616	35	12	25	27	1.92
4686358--4686408	25	2.1	24	96	3	93	35	15	15	33	1.90
4686407--4686446	21	1.9	21	89	0	62	45	17	12	25	1.83
4693267--4693350	40	2.2	36	84	14	107	51	5	9	33	1.59
4694486--4694545	23	2.7	22	82	5	75	61	1	0	36	1.06
4694486--4694543	22	2.6	23	86	5	75	62	1	0	36	1.06
4699245--4699542	148	2.0	148	100	0	596	34	13	14	37	1.86
4705347--4705419	30	2.4	31	77	17	80	75	6	13	4	1.15
4705463--4705785	164	2.0	164	90	4	515	36	20	17	25	1.94
4706179--4706255	22	3.5	22	92	0	127	38	27	12	20	1.89
4707055--4707818	106	7.2	106	89	0	1161	34	24	17	23	1.96
4707774--4707863	45	2.0	45	93	0	153	37	23	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4707668--4707983	151	2.1	151	91	1	510	34	24	18	21	1.96
4707559--4708089	257	2.1	255	92	1	891	34	25	18	22	1.96
4707456--4708144	363	1.9	363	91	0	1126	34	24	18	22	1.96
4707819--4708164	106	3.3	105	90	2	514	33	25	19	22	1.97
4709685--4709727	20	2.2	20	87	4	61	32	4	0	62	1.15
4711700--4711754	22	2.5	22	85	2	67	27	16	21	34	1.95
4713669--4713714	23	2.0	24	86	4	67	71	2	4	21	1.14
4719587--4719628	21	2.0	22	90	4	68	45	16	14	23	1.84
4722354--4722407	3	18.0	3	81	14	67	38	0	0	61	0.96
4722355--4722399	12	3.8	12	91	8	74	40	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30