genome.fa.s8478.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008478.1 Hibiscus syriacus cultivar Beakdansim tig00111309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1476524

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 822 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220435--220494	30	2.0	30	93	6	104	33	6	16	43	1.74
220574--220672	21	4.7	21	79	12	105	24	36	18	21	1.95
220849--220888	20	1.9	21	85	10	55	37	37	10	15	1.80
223488--223586	21	4.8	20	83	10	119	22	35	20	22	1.96
223607--223694	20	4.3	20	82	2	113	19	27	22	30	1.98
225398--225508	44	2.5	42	81	9	150	20	26	29	23	1.99
225398--225502	23	4.7	23	88	5	137	20	25	31	22	1.98
231986--232206	95	2.5	88	78	15	256	30	19	20	29	1.97
232044--232231	95	2.0	94	90	3	297	30	18	18	32	1.95
235493--235525	7	4.9	7	85	7	50	69	0	0	30	0.88
235495--235524	13	2.3	13	94	0	51	70	0	0	30	0.88
235818--235859	22	1.9	22	90	0	66	61	4	4	28	1.36
235818--235866	22	2.2	22	85	0	62	65	4	4	26	1.29
236921--236961	20	2.0	20	86	9	57	39	9	7	43	1.65
237180--237230	15	3.4	15	88	0	75	31	31	21	15	1.95
243791--243831	20	2.0	20	86	9	57	39	9	7	43	1.65
244050--244084	15	2.3	15	95	0	61	28	31	22	17	1.96
244691--244728	20	1.9	20	100	0	76	23	34	31	10	1.89
245907--245951	4	12.0	4	90	9	53	73	0	0	26	0.84
245914--245952	9	4.0	10	83	16	55	71	0	0	28	0.86
245909--245952	16	2.7	16	83	16	63	72	0	0	27	0.85
245971--246072	36	2.8	36	85	7	134	49	6	1	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245968--246099	36	3.6	36	73	16	101	45	7	2	44	1.44
246088--246150	2	32.0	2	90	9	103	47	1	0	50	1.10
246469--246505	15	2.5	15	100	0	74	37	10	8	43	1.69
249319--249348	3	10.3	3	92	7	53	66	0	0	33	0.92
251278--251348	31	2.3	31	82	0	106	33	18	22	25	1.96
254672--254712	16	2.5	17	76	11	50	68	0	4	26	1.10
255157--255228	22	3.4	21	76	16	69	48	0	2	48	1.16
255241--255292	26	2.0	26	85	7	70	48	0	0	51	1.00
255980--256025	20	2.3	20	100	0	92	23	26	17	32	1.97
258183--258261	41	2.0	40	82	2	95	17	16	15	50	1.78
264624--264764	72	2.0	72	97	0	264	44	6	4	43	1.51
268394--268433	20	1.9	22	90	10	66	35	2	7	55	1.42
270477--270545	14	4.9	14	80	18	72	31	7	24	36	1.83
270480--270545	28	2.4	28	94	0	114	31	7	25	34	1.84
270751--270778	3	9.3	3	100	0	56	0	0	32	67	0.91
271041--271081	14	2.9	14	86	10	57	31	7	26	34	1.84
271136--271166	4	7.8	4	100	0	62	25	0	0	74	0.82
270228--271322	552	2.0	548	88	5	1641	22	16	17	43	1.88
276662--276710	19	2.6	19	77	6	55	20	0	4	75	0.96
280239--280312	37	2.0	37	97	2	141	24	14	24	36	1.93
281939--282027	34	2.6	34	83	3	108	33	20	10	35	1.86
281964--282254	96	3.0	96	84	7	392	30	20	9	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282078--282421	165	2.1	163	84	3	449	29	19	9	40	1.84
282182--282346	64	2.6	65	86	2	219	28	20	10	40	1.85
282314--282380	34	2.0	33	82	5	82	26	19	13	40	1.89
283985--284038	20	2.5	22	85	11	76	20	5	0	74	1.02
283985--284027	21	2.1	21	95	4	79	18	4	0	76	0.95
289125--289163	14	2.7	15	80	11	55	17	0	17	64	1.30
290639--290687	19	2.4	19	83	10	62	44	2	0	53	1.12
291474--291589	60	1.9	60	84	3	153	34	15	11	38	1.83
292187--292233	18	2.6	19	78	18	55	40	6	0	53	1.27
298868--298954	41	2.1	42	97	2	167	55	0	4	40	1.21
298860--298964	41	2.7	37	84	12	147	52	0	4	42	1.22
307366--307412	18	2.6	18	96	0	85	29	38	19	12	1.89
307499--307602	29	3.6	29	93	1	183	19	20	15	45	1.86
307506--307619	58	2.0	58	87	3	167	20	20	14	45	1.85
308006--308111	45	2.4	45	81	10	119	28	15	19	36	1.92
309723--309874	79	1.9	79	81	2	180	36	24	15	24	1.94
311149--311207	21	2.7	22	76	5	66	62	6	20	10	1.49
317124--317173	25	2.0	25	100	0	100	44	12	20	24	1.85
321249--321290	19	2.2	20	91	4	68	9	21	4	64	1.42
323109--323160	26	2.0	26	92	7	88	19	19	26	34	1.95
323238--323306	3	23.7	3	83	5	88	59	0	4	36	1.17
324281--324325	23	2.0	23	90	0	72	35	11	11	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324287--324339	23	2.3	23	80	0	61	35	15	9	39	1.79
327350--327400	23	2.3	22	86	6	68	58	19	11	9	1.60
327869--327920	20	2.6	20	96	0	95	38	26	13	21	1.90
327911--328008	21	4.8	20	71	6	70	35	21	20	22	1.96
327976--328127	20	7.6	20	81	2	171	34	25	20	19	1.96
328509--328579	33	2.2	33	92	0	115	11	22	18	47	1.80
328700--328754	14	3.6	14	73	21	56	41	23	25	9	1.83
328700--328770	33	2.2	33	94	0	124	43	25	22	8	1.81
328766--328863	19	5.7	19	70	22	81	10	24	22	42	1.84
328788--328877	14	5.7	14	74	23	81	8	25	23	42	1.83
328771--328885	33	3.5	33	95	0	212	9	24	20	45	1.81
330583--331147	185	3.0	186	98	0	1107	22	12	18	46	1.83
330583--331147	93	6.1	93	99	0	1107	22	12	18	46	1.83
331191--331319	19	7.3	19	75	17	125	46	28	16	8	1.76
331227--331319	33	2.8	32	91	4	150	47	27	17	7	1.74
331191--331319	52	2.5	52	72	14	131	46	28	16	8	1.76
331315--331449	19	7.6	19	74	16	119	11	18	23	45	1.82
331337--331393	14	3.7	14	77	20	60	10	21	22	45	1.82
331320--331412	33	2.8	33	93	0	159	11	19	21	47	1.81
333373--333408	14	2.6	14	95	0	63	33	0	22	44	1.53
333515--333617	19	5.6	19	84	13	153	44	17	23	14	1.85
333607--333932	19	18.7	19	77	18	343	15	20	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333607--333932	52	6.3	49	86	8	285	15	20	18	45	1.85
333645--333932	71	4.1	71	82	13	366	13	20	18	46	1.83
333607--333865	123	2.1	123	96	0	473	15	20	17	45	1.85
336211--336235	12	2.1	12	100	0	50	0	28	0	72	0.86
336410--336456	24	2.0	24	87	8	69	38	21	14	25	1.92
337139--337507	20	18.5	20	86	4	458	20	18	26	34	1.96
341703--341760	3	19.3	3	100	0	116	32	0	0	67	0.91
341982--342030	20	2.5	20	96	0	89	20	32	10	36	1.86
348635--348735	33	3.1	33	95	0	184	25	16	25	31	1.97
348645--348730	17	5.2	17	66	20	56	25	18	24	31	1.98
348635--348721	17	5.2	17	65	15	56	25	17	26	31	1.97
353566--353640	33	2.3	33	84	6	91	30	0	5	64	1.16
353597--353670	30	2.4	30	81	4	85	39	0	1	59	1.06
353813--353866	17	3.2	17	72	0	54	31	0	3	64	1.11
355448--355520	21	3.5	21	87	7	103	17	34	26	21	1.96
356024--356118	28	3.2	28	86	8	109	51	4	4	40	1.41
356025--356125	34	3.2	32	78	17	120	52	4	3	38	1.42
356519--357142	255	2.5	255	93	2	1035	33	19	24	22	1.97
356519--357143	127	4.9	128	93	2	1023	33	19	24	22	1.97
357213--357253	8	5.2	8	82	5	57	36	29	0	34	1.58
362014--362127	29	3.9	29	76	5	106	35	7	3	54	1.45
362014--362127	59	1.9	58	86	8	160	35	7	3	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362140--362259	29	4.1	28	77	11	102	54	1	5	39	1.32
362162--362274	29	3.8	28	78	16	113	55	2	3	38	1.31
362129--362259	58	2.3	57	81	15	146	56	1	5	36	1.31
362569--362655	16	5.4	16	75	2	66	49	29	10	10	1.70
362564--362658	33	2.9	33	76	7	113	52	27	9	10	1.66
362738--362777	20	2.0	20	85	9	55	32	0	0	67	0.91
363248--363338	46	2.0	46	86	4	130	40	27	14	17	1.88
363326--363426	31	3.2	31	80	1	103	33	31	14	19	1.93
364568--364613	19	2.3	20	81	7	58	28	28	17	26	1.98
364648--364700	21	2.5	21	87	6	81	22	26	16	33	1.96

Tables:   1   2   3   4   5   6   7