genome.fa.s8478.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008478.1 Hibiscus syriacus cultivar Beakdansim tig00111309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1476524

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 822 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364690--364783	21	4.5	21	93	1	145	38	17	23	21	1.93
364772--364886	20	5.7	20	79	6	115	33	26	16	22	1.95
364769--364906	41	3.4	41	81	2	179	36	25	15	22	1.94
365073--365116	22	2.0	22	95	0	79	20	45	15	18	1.85
365541--365595	25	2.2	24	78	15	58	20	9	18	52	1.71
367538--367673	19	7.1	19	86	5	166	29	27	25	17	1.97
367543--367673	29	4.5	28	80	8	122	29	28	25	17	1.97
374896--374994	9	10.3	9	75	10	63	29	25	27	18	1.98
374898--374995	19	5.1	19	73	13	74	29	25	25	19	1.98
374957--374995	21	1.9	21	89	5	62	33	23	25	17	1.96
376665--376710	20	2.3	20	84	0	56	36	23	21	17	1.94
376676--376720	20	2.3	20	88	3	74	37	17	24	20	1.93
376684--376759	19	4.2	19	74	17	72	42	19	22	15	1.89
376704--376793	33	2.7	33	92	0	153	46	20	18	14	1.83
376791--376840	20	2.5	20	90	0	82	14	26	26	34	1.94
376790--376866	20	3.9	19	80	8	73	20	19	25	33	1.96
377209--377270	21	3.0	20	72	9	70	22	43	12	20	1.86
377205--377294	42	2.2	42	86	4	130	23	40	14	22	1.90
377208--377294	40	2.1	41	87	4	122	24	40	13	21	1.90
378620--378658	14	2.8	14	84	0	51	35	0	17	46	1.49
378794--378843	14	3.0	17	75	24	61	48	18	22	12	1.80
378870--378917	20	2.4	20	100	0	96	14	22	27	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379144--379256	20	5.7	20	93	0	172	28	19	27	24	1.99
380103--380156	24	2.2	24	90	0	81	22	16	20	40	1.91
380331--380375	3	15.0	3	85	0	63	73	0	26	0	0.84
380331--380379	12	4.1	12	100	0	98	73	0	26	0	0.83
382709--382835	33	3.8	33	93	0	209	46	18	22	12	1.83
382835--382911	19	4.3	19	76	20	85	12	15	24	46	1.81
382850--382976	33	3.8	33	91	2	193	11	21	21	45	1.83
382845--382976	19	7.7	18	69	23	74	11	21	21	46	1.82
383083--383119	14	2.6	15	87	12	60	48	21	0	29	1.50
384471--384537	21	3.2	21	68	4	55	19	20	35	23	1.95
384471--384593	42	2.9	41	79	7	113	22	18	36	21	1.95
384811--384995	91	2.0	90	87	6	264	47	17	12	22	1.82
386730--386818	14	5.6	14	68	23	52	41	21	23	13	1.88
386681--386835	33	4.5	33	86	5	184	44	19	22	13	1.85
386681--386859	19	10.1	19	71	19	127	44	18	22	13	1.85
386855--386947	33	2.8	32	86	4	114	10	19	24	45	1.82
386886--386953	20	3.8	19	67	26	58	11	20	22	45	1.83
387471--387582	20	5.6	20	84	6	75	21	19	20	38	1.94
387489--387582	41	2.3	40	87	5	127	20	20	19	40	1.92
387572--387644	21	3.5	21	81	3	85	38	17	21	21	1.93
387572--387747	41	4.3	41	68	9	115	32	18	21	27	1.96
387654--387705	20	2.5	21	87	3	70	21	23	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387695--387747	21	2.5	22	75	6	65	33	16	26	22	1.96
389457--389491	17	2.0	18	88	5	54	77	2	20	0	0.90
389727--389867	39	3.4	39	71	19	140	26	17	7	48	1.73
389689--389872	87	2.1	87	100	0	368	27	15	9	47	1.75
389689--389828	48	3.1	48	68	21	156	27	15	9	47	1.75
391318--391376	21	2.8	21	97	0	109	50	23	5	20	1.67
391885--392212	164	2.0	164	100	0	656	36	18	9	34	1.84
394844--394891	2	24.0	2	100	0	96	50	0	0	50	1.00
402719--402763	22	2.0	20	84	16	54	75	2	0	22	0.91
402719--402763	23	2.0	21	87	8	63	75	2	0	22	0.91
407594--407648	26	2.3	24	81	12	60	58	1	9	30	1.40
408015--408124	51	2.2	50	98	1	211	56	3	10	29	1.51
408136--408166	2	15.5	2	93	0	53	51	0	0	48	1.00
412271--412295	3	8.3	3	100	0	50	68	0	32	0	0.90
416067--416111	22	2.0	22	83	8	56	11	28	13	46	1.77
420138--420169	16	2.0	16	100	0	64	43	12	0	43	1.42
428865--428913	21	2.3	21	100	0	98	24	44	4	26	1.71
436156--436191	15	2.4	15	100	0	72	22	41	11	25	1.86
438087--438159	31	2.4	31	76	0	83	49	13	12	24	1.77
441896--441920	2	12.5	2	100	0	50	52	0	48	0	1.00
442063--442113	5	10.2	5	87	8	77	39	0	39	21	1.54
442169--442202	12	2.8	12	90	0	50	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450459--450502	19	2.2	21	84	8	56	31	6	2	59	1.36
467052--467092	20	2.0	20	90	0	64	14	21	39	24	1.91
467416--467463	13	3.4	14	85	5	53	50	4	12	33	1.59
467440--467470	15	2.1	15	100	0	62	45	6	12	35	1.68
467732--467782	16	3.0	16	88	8	66	52	27	0	19	1.46
469677--469730	23	2.3	23	90	0	90	25	14	35	24	1.94
473534--473573	21	1.9	21	89	0	62	30	7	7	55	1.56
475467--475505	19	2.0	20	95	5	71	10	25	35	28	1.89
477704--477790	35	2.5	38	82	12	107	57	9	4	28	1.50
477780--477868	34	2.6	34	87	3	126	69	10	1	19	1.23
477827--477868	19	2.2	19	83	12	50	73	4	0	21	1.01
477889--477923	14	2.4	15	85	9	54	71	8	0	20	1.11
478988--479090	30	3.4	30	95	0	179	33	24	18	24	1.97
479076--479203	31	4.1	31	76	6	123	34	21	17	26	1.96
480529--480574	21	2.2	21	88	0	65	15	26	28	30	1.96
481492--481529	19	2.0	19	94	0	67	13	36	23	26	1.91
483095--483127	16	1.9	18	88	11	52	60	0	3	36	1.12
483877--484234	177	2.0	177	100	0	716	17	30	7	44	1.76
487121--487151	15	2.1	15	93	0	53	45	0	0	54	0.99
488149--488240	30	3.1	30	87	0	103	33	30	10	25	1.90
492139--492186	22	2.2	22	96	0	87	6	25	25	43	1.77
493524--493548	2	12.5	2	100	0	50	0	48	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504623--504647	11	2.3	11	100	0	50	52	12	8	28	1.66
507883--507930	2	24.0	2	100	0	96	50	0	0	50	1.00
508452--508519	23	3.0	23	86	0	91	17	25	25	32	1.97
511675--511725	26	2.0	26	88	0	75	70	0	3	25	1.04
516535--516608	30	2.4	29	77	18	80	24	0	6	68	1.13
516537--516610	22	3.4	21	74	18	62	25	0	6	67	1.15
516556--516625	29	2.4	28	81	11	79	25	1	4	68	1.16
516747--516792	21	2.2	21	88	0	65	41	28	15	15	1.87
518875--518917	21	2.0	21	82	8	52	46	2	37	13	1.57
519230--519272	21	2.0	21	82	8	52	46	2	37	13	1.57
518752--519450	355	2.0	355	98	0	1362	38	15	19	26	1.92
523196--523226	15	2.1	15	100	0	62	32	19	29	19	1.96
523200--523233	15	2.3	15	89	0	50	29	29	20	20	1.98
523751--523828	39	2.0	39	97	0	147	30	24	15	29	1.95
524819--524853	2	17.5	2	100	0	70	48	0	0	51	1.00
527233--527266	18	1.9	17	94	5	59	70	5	5	17	1.28
529074--529344	141	1.9	141	87	3	393	24	18	28	28	1.98
542041--542071	14	2.2	14	100	0	62	45	12	6	35	1.68
542135--542168	18	1.9	17	94	5	59	70	5	5	17	1.28
543698--543737	3	13.0	3	84	5	53	65	2	2	30	1.19
550739--550798	29	2.1	28	84	3	75	40	5	0	55	1.22
553032--553114	31	2.7	31	92	1	132	25	25	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553371--553395	12	2.1	12	100	0	50	64	0	8	28	1.22
554365--554417	27	2.0	27	88	0	79	30	7	9	52	1.61
555184--555263	27	3.2	26	74	22	71	43	5	0	51	1.23
559432--559469	19	2.0	19	100	0	76	31	26	0	42	1.56
560627--560662	10	3.7	10	88	3	56	13	30	27	27	1.94
562766--562848	24	3.5	24	86	0	112	24	15	19	40	1.90
562757--562848	48	1.9	48	86	0	130	23	15	18	42	1.88
562773--562870	24	4.1	24	85	1	81	23	11	19	45	1.82
565743--565852	31	3.5	31	94	0	193	38	21	20	19	1.94
566656--566700	21	2.1	21	87	0	63	15	24	28	31	1.96

Tables:   1   2   3   4   5   6   7