genome.fa.s8478.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008478.1 Hibiscus syriacus cultivar Beakdansim tig00111309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1476524

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 822 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569858--569967	31	3.5	31	94	0	193	38	21	20	19	1.94
570764--570808	21	2.1	21	87	0	63	15	24	28	31	1.96
573588--573710	31	4.0	31	83	8	146	37	22	18	21	1.94
573588--573710	62	2.0	60	87	3	174	37	22	18	21	1.94
573604--573710	31	3.5	30	89	2	153	39	22	18	19	1.93
574514--574558	21	2.1	21	87	0	63	15	24	28	31	1.96
577302--577384	24	3.5	23	83	3	94	30	18	16	34	1.93
578767--578837	37	1.9	37	100	0	142	25	21	5	47	1.72
579188--579417	117	2.0	112	91	5	372	28	11	9	51	1.68
595069--595105	18	2.1	18	100	0	74	32	29	16	21	1.95
595720--595762	12	3.6	12	77	0	50	16	16	16	51	1.77
598718--598775	27	2.1	27	84	6	73	44	0	1	53	1.10
600223--600298	36	2.1	37	97	2	145	46	19	18	15	1.85
600471--600508	12	3.2	12	85	14	53	34	0	0	65	0.93
600467--600505	20	2.0	20	90	10	62	33	0	0	66	0.92
601055--601133	20	3.8	20	88	10	97	58	25	16	0	1.38
601079--601146	22	3.2	21	87	8	86	57	26	16	0	1.39
612800--612984	36	5.1	36	92	2	307	44	20	17	17	1.86
613729--613801	20	3.5	21	87	9	105	61	16	20	1	1.41
615745--615787	21	2.0	21	100	0	86	18	27	13	39	1.89
621873--621907	18	1.9	18	88	0	52	11	11	2	74	1.18
623007--623033	14	1.9	14	100	0	54	29	29	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623023--623089	33	2.0	33	85	5	91	37	14	16	31	1.89
624350--624380	9	3.4	9	95	0	53	45	9	12	32	1.75
624608--624658	20	2.6	21	87	9	72	41	21	19	17	1.91
624631--624677	20	2.3	20	82	7	51	42	19	17	21	1.89
624689--624830	63	2.2	64	80	8	182	33	19	18	29	1.95
624806--624850	20	2.2	20	92	0	72	42	22	22	13	1.88
625031--625126	40	2.4	40	87	0	138	23	16	18	40	1.91
625037--625107	20	3.5	20	78	0	88	23	15	19	40	1.90
625056--625123	20	3.4	20	73	15	68	23	19	19	38	1.93
625242--625331	40	2.2	40	92	0	144	21	16	20	42	1.89
625247--625318	20	3.6	20	80	0	99	22	16	19	41	1.90
625246--625334	20	4.4	21	76	12	98	21	16	21	40	1.91
625636--625697	31	2.0	31	100	0	124	41	6	16	35	1.74
627062--627096	3	12.0	3	93	6	63	34	0	0	65	0.93
627110--627147	20	1.9	20	100	0	76	28	23	26	21	1.99
628888--628956	3	23.0	3	84	0	93	36	2	1	59	1.21
630371--630419	23	2.1	23	84	3	62	42	2	0	55	1.11
641771--641841	9	8.3	9	79	16	64	81	0	16	1	0.76
641778--641840	23	2.7	22	83	11	81	84	0	14	1	0.71
641771--641841	7	10.4	7	75	17	60	81	0	16	1	0.76
641774--641839	33	2.0	33	85	8	91	83	0	15	1	0.72
642990--643697	83	8.5	83	98	0	1364	27	12	21	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642990--643697	331	2.1	332	98	0	1364	27	12	21	37	1.90
644452--644978	113	4.7	113	93	0	808	38	14	19	27	1.90
644921--645000	38	2.1	39	90	2	126	43	12	21	22	1.86
644809--645182	154	2.5	148	89	6	576	39	12	19	28	1.87
645077--645165	36	2.5	36	94	0	151	48	10	21	20	1.78
645156--645331	84	2.1	82	83	4	210	39	17	16	26	1.91
645501--645562	3	20.3	3	83	3	79	35	3	1	59	1.23
645560--645634	2	37.5	2	100	0	150	49	0	0	50	1.00
647034--647081	23	2.0	23	84	4	60	43	2	0	54	1.12
648493--648646	29	5.3	28	78	8	121	38	7	3	50	1.48
648518--648646	58	2.2	58	83	5	154	39	7	3	48	1.50
652326--652352	14	1.9	14	100	0	54	22	7	22	48	1.75
655494--655535	18	2.3	18	95	0	75	30	4	28	35	1.78
656662--656697	14	2.6	14	95	0	63	0	38	0	61	0.96
658270--658346	23	3.3	23	72	16	77	18	24	23	33	1.96
658270--658352	24	3.5	23	76	14	71	19	24	22	33	1.97
661288--661336	21	2.3	21	86	13	66	22	16	22	38	1.92
663969--664129	63	2.5	65	81	8	181	25	18	21	34	1.96
664010--664129	64	1.9	63	87	1	177	24	16	22	36	1.94
665694--665738	21	2.1	21	87	0	63	31	28	24	15	1.96
666749--666876	31	4.1	31	80	6	150	28	17	21	32	1.96
666863--666934	30	2.4	30	92	0	117	23	20	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670628--670789	63	2.6	64	82	9	190	25	19	20	33	1.97
674208--674242	17	2.1	17	88	0	52	40	5	8	45	1.58
677673--677924	138	1.8	139	85	5	359	37	23	9	29	1.86
678393--678430	3	12.7	3	100	0	76	31	0	0	68	0.90
680738--680777	21	1.9	21	85	10	55	47	7	5	40	1.54
681393--681423	16	1.9	16	93	0	53	41	16	16	25	1.88
683054--683103	20	2.5	20	86	0	64	32	12	20	36	1.89
684150--684192	2	21.5	2	85	0	59	41	0	6	51	1.29
685939--685975	16	2.3	16	100	0	74	27	21	5	45	1.73
694519--694549	15	2.1	15	100	0	62	19	19	6	54	1.65
703014--703056	2	21.5	2	100	0	86	48	0	0	51	1.00
704201--704251	26	2.0	24	85	11	66	33	1	9	54	1.44
704208--704264	27	2.2	26	84	9	71	29	3	10	56	1.50
710510--710579	31	2.3	31	87	5	106	21	10	15	52	1.71
712502--712534	14	2.4	14	90	10	50	63	12	3	21	1.41
712795--712828	18	1.9	17	88	5	50	64	5	0	29	1.17
720892--720925	18	1.9	17	88	5	50	64	5	0	29	1.17
724702--724739	19	2.0	20	84	5	51	23	28	23	23	1.99
733626--733665	20	2.0	20	95	0	71	42	10	10	37	1.72
745258--745292	15	2.2	16	95	5	63	11	25	34	28	1.91
745338--745404	32	2.1	32	85	0	89	19	25	31	23	1.98
745348--745404	15	3.7	15	68	9	51	19	26	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745904--745976	18	3.8	19	76	13	60	45	1	1	52	1.18
745969--745993	9	2.8	9	100	0	50	80	0	0	20	0.72
749436--749481	20	2.4	18	89	10	74	69	0	0	30	0.89
750523--750567	3	15.0	3	82	17	58	66	0	0	33	0.92
750909--751903	113	8.9	113	88	4	1358	28	19	15	36	1.92
752309--752363	22	2.5	22	84	0	74	36	12	14	36	1.84
752728--752883	54	2.9	54	95	0	276	22	25	16	35	1.94
754982--755433	114	4.0	114	94	0	778	30	20	16	31	1.95
757566--757670	10	10.2	10	76	16	83	3	12	0	83	0.77
757568--757692	7	17.4	7	73	19	82	4	12	2	80	0.94
757566--757619	1	54.0	1	84	0	72	1	5	0	92	0.44
757651--757703	26	2.0	26	92	0	88	3	15	11	69	1.31
759053--759083	11	2.8	11	100	0	62	16	19	9	54	1.68
761228--761291	14	4.5	14	78	3	65	56	4	12	26	1.56
763842--763887	20	2.4	18	89	10	74	69	0	0	30	0.89
765158--765196	19	2.1	19	85	0	51	82	0	0	17	0.68
781926--781965	21	1.9	21	85	10	55	35	10	2	52	1.48
783887--784067	64	2.8	63	83	3	218	27	17	26	29	1.97
784015--784065	19	2.7	19	85	8	70	25	15	35	23	1.94
783908--784067	65	2.5	65	86	3	216	27	16	26	30	1.97
783909--784116	65	3.2	63	79	14	210	27	17	25	30	1.97
784476--784535	31	1.9	31	89	0	93	40	5	10	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784992--785044	19	2.8	20	75	16	58	64	0	0	35	0.94
784998--785059	18	3.2	20	78	19	62	61	0	1	37	1.06
785054--785210	64	2.5	64	94	4	275	57	1	0	40	1.10
785075--785159	40	2.2	37	85	12	109	55	1	0	43	1.07
785110--785191	24	3.2	26	81	13	100	56	1	0	42	1.07
785172--785222	12	4.3	12	76	18	54	66	1	0	31	1.03
786159--786208	23	2.2	23	82	13	59	48	0	2	50	1.12
789766--789883	57	2.0	58	95	4	211	22	21	17	38	1.93
791893--791945	4	13.2	4	95	0	52	49	11	0	39	1.39
800097--800157	27	2.3	27	83	5	81	34	18	19	27	1.95

Tables:   1   2   3   4   5   6   7