genome.fa.s8478.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008478.1 Hibiscus syriacus cultivar Beakdansim tig00111309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1476524

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 822 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1307929--1308073	21	6.8	21	77	15	113	28	27	16	27	1.97
1307929--1308057	44	2.9	42	82	12	136	28	27	15	28	1.96
1307929--1308055	65	1.9	66	83	10	163	29	26	15	28	1.96
1310778--1310852	18	3.8	19	80	15	80	26	33	18	21	1.96
1311474--1311533	29	2.1	29	100	0	120	30	36	3	30	1.74
1314308--1314353	15	3.2	15	82	14	53	0	17	2	80	0.81
1314317--1314354	13	3.0	13	88	11	53	0	15	5	78	0.91
1316423--1316467	23	1.9	24	95	4	83	26	17	31	24	1.97
1316525--1316563	17	2.3	17	95	0	69	43	7	0	48	1.31
1322202--1322404	102	2.0	103	99	0	399	36	14	7	40	1.76
1326231--1326271	22	2.0	20	85	9	55	53	2	0	43	1.13
1329435--1329505	35	2.0	36	91	2	117	29	5	16	47	1.70
1329916--1329947	16	1.9	17	93	6	57	37	3	21	37	1.70
1334238--1334313	33	2.3	33	90	6	118	30	2	19	47	1.63
1335952--1336005	3	17.3	3	92	7	90	35	0	0	64	0.94
1335953--1336005	25	2.1	25	93	6	90	33	0	0	66	0.92
1336083--1336149	30	2.2	31	91	2	109	23	29	13	32	1.93
1340732--1340828	39	2.6	37	84	9	117	28	22	17	30	1.97
1340946--1340985	20	2.0	20	90	4	64	30	12	42	15	1.83
1341045--1341152	30	3.6	29	77	14	112	12	23	27	37	1.90
1343862--1344104	14	17.8	14	71	12	166	46	4	7	41	1.53
1343837--1344113	42	6.7	42	89	4	404	46	5	7	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1343837--1344106	122	2.2	122	88	2	389	46	5	7	40	1.55
1347466--1347659	81	2.4	82	84	4	257	14	15	12	56	1.67
1347882--1347938	30	1.9	30	92	0	96	29	19	17	33	1.95
1350731--1350801	21	3.4	21	73	11	65	26	8	29	35	1.86
1352573--1352631	23	2.6	23	83	0	82	20	22	25	32	1.98
1354692--1354744	21	2.5	21	96	0	97	32	28	16	22	1.96
1357921--1357953	17	1.9	17	93	0	57	42	21	21	15	1.89
1360697--1360882	51	3.7	50	84	5	239	47	16	9	26	1.76
1360687--1360872	102	1.8	101	86	5	268	50	16	7	25	1.71
1360959--1361080	64	1.9	64	86	3	172	58	1	3	36	1.24
1362342--1362394	21	2.5	21	81	6	72	20	26	18	33	1.96
1362322--1362519	82	2.4	81	77	4	200	30	21	18	29	1.97
1362384--1362435	21	2.5	21	87	3	70	38	17	23	21	1.93
1362369--1362493	41	3.0	41	71	9	119	32	20	18	28	1.96
1363098--1363143	19	2.4	19	96	0	83	13	19	19	47	1.81
1363115--1363213	33	3.0	33	89	1	144	11	24	23	41	1.86
1363192--1363238	20	2.3	20	75	13	51	10	25	17	46	1.79
1364495--1364567	21	3.7	20	72	15	62	31	41	12	15	1.84
1365383--1365449	21	3.2	21	68	4	55	25	35	19	19	1.95
1365331--1365449	42	2.8	42	81	5	107	23	36	17	22	1.95
1367986--1368039	20	2.7	20	82	0	72	37	24	22	16	1.94
1368026--1368116	14	5.4	17	69	23	68	46	21	17	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1368026--1368148	33	3.8	33	90	2	185	47	24	16	12	1.80
1368043--1368137	14	6.2	14	72	20	75	49	23	15	11	1.77
1368026--1368148	65	1.9	66	88	5	187	47	24	16	12	1.80
1368144--1368240	19	5.7	18	67	23	75	14	19	19	46	1.84
1368149--1368240	33	2.8	33	94	0	157	14	18	19	47	1.82
1368742--1368786	18	2.5	18	88	0	72	13	15	44	26	1.83
1370106--1370164	20	3.0	20	84	0	73	44	22	16	16	1.87
1370421--1370464	22	2.0	22	100	0	88	18	13	45	22	1.84
1370632--1370766	20	6.7	20	78	7	94	24	17	23	34	1.96
1370632--1370769	61	2.3	61	84	0	186	23	17	23	35	1.95
1370632--1370787	61	2.6	61	81	2	152	23	19	23	34	1.96
1370837--1370877	21	2.0	21	85	0	55	34	29	17	19	1.94
1376053--1376278	64	3.5	64	80	9	248	32	20	18	28	1.96
1376948--1377011	30	2.1	30	85	0	83	18	18	28	34	1.95
1380204--1380429	64	3.5	64	80	9	257	32	20	19	28	1.97
1381104--1381164	30	2.0	30	83	0	77	18	19	26	36	1.94
1391237--1391483	125	2.0	122	88	2	359	40	15	13	30	1.86
1393876--1393910	17	2.1	17	100	0	70	34	0	28	37	1.58
1395489--1395553	32	2.0	32	82	5	78	44	12	9	33	1.74
1395504--1395567	32	2.0	32	87	0	92	40	10	9	39	1.73
1395509--1395676	32	5.3	31	68	14	83	39	11	8	39	1.74
1396796--1396828	17	2.0	17	94	5	59	24	0	27	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398182--1398227	18	2.6	18	86	3	67	28	30	6	34	1.82
1404238--1404269	12	2.5	13	90	10	57	21	0	0	78	0.76
1413123--1413317	84	2.3	84	98	0	372	27	18	14	40	1.89
1415139--1415276	60	2.3	60	74	2	143	34	15	17	33	1.91
1416185--1416221	19	1.9	19	94	0	65	32	29	16	21	1.95
1416302--1416366	20	3.2	20	97	0	121	24	29	20	26	1.99
1416527--1416590	22	2.8	23	84	13	80	23	40	12	23	1.88
1416540--1416590	22	2.3	22	93	0	84	21	41	13	23	1.89
1416998--1417053	20	2.8	20	86	0	76	12	16	21	50	1.78
1417017--1417061	20	2.2	20	84	0	63	15	13	17	53	1.73
1418961--1419006	20	2.3	20	96	0	83	34	26	21	17	1.95
1419007--1419073	20	3.3	20	83	4	82	16	19	26	37	1.93
1419060--1419103	20	2.2	20	95	0	79	13	13	22	50	1.77
1419578--1419657	21	3.8	21	83	0	106	21	35	18	25	1.96
1419588--1419679	42	2.2	42	82	3	105	22	35	17	23	1.95
1421064--1421113	14	3.6	14	81	5	66	26	0	22	52	1.48
1421056--1421145	27	3.2	27	88	6	126	28	1	20	50	1.55
1421056--1421123	13	5.1	13	74	13	66	26	1	19	52	1.54
1421212--1421250	20	2.0	20	89	0	60	48	25	17	7	1.74
1421293--1421423	20	6.8	20	76	10	130	26	19	19	34	1.96
1421259--1421395	34	3.9	34	77	11	130	22	19	21	36	1.95
1421253--1421423	74	2.3	74	87	0	234	25	18	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1421394--1421676	140	2.0	140	95	0	503	44	13	12	28	1.81
1421734--1421768	18	1.9	18	94	0	61	17	2	25	54	1.57
1424906--1424955	20	2.5	20	93	0	82	22	24	32	22	1.98
1425053--1425091	19	2.1	19	95	0	69	23	15	28	33	1.95
1425591--1425643	21	2.6	21	88	8	74	16	1	28	52	1.54
1431395--1431471	39	2.0	39	100	0	154	32	5	7	54	1.51
1438694--1438732	19	2.1	19	100	0	78	23	25	0	51	1.49
1442410--1442464	27	2.0	27	82	13	67	29	10	7	52	1.63
1446097--1446155	26	2.1	29	87	9	88	38	15	20	25	1.91
1446095--1446177	31	2.9	30	79	15	86	37	15	20	26	1.93
1450008--1450127	59	2.0	59	100	0	240	37	16	17	28	1.92
1451720--1451788	29	2.4	29	92	4	113	28	15	4	50	1.63
1451892--1451918	14	1.9	14	100	0	54	14	0	3	81	0.82
1469058--1469092	17	2.1	17	100	0	70	22	25	28	22	1.99

Tables:   1   2   3   4   5   6   7

The End!