genome.fa.s8504.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008504.1 Hibiscus syriacus cultivar Beakdansim tig00111356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2056749

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1904423--1904535	19	6.3	19	79	12	114	45	28	16	9	1.79
1904531--1904665	19	7.6	19	72	16	101	11	17	22	47	1.81
1904536--1904628	33	2.8	33	86	0	141	11	18	20	49	1.78
1906583--1906618	14	2.6	14	95	0	63	33	0	22	44	1.53
1906724--1906820	19	5.4	19	82	15	134	45	17	22	14	1.85
1906724--1906839	52	2.2	52	95	3	207	43	18	25	13	1.86
1906829--1907052	19	12.7	19	79	16	259	15	20	17	45	1.85
1906829--1907052	52	4.2	52	83	13	248	15	20	17	45	1.85
1906829--1907025	88	2.2	90	94	2	344	15	21	16	45	1.85
1909471--1909517	24	2.0	24	87	8	69	38	21	14	25	1.92
1910199--1910468	20	13.5	20	88	1	281	20	17	24	37	1.94
1910455--1910537	21	4.0	21	73	6	78	25	16	24	33	1.96
1910435--1910533	42	2.4	43	77	11	100	21	18	23	37	1.94
1910823--1910859	13	2.8	13	88	12	58	56	0	0	43	0.99
1912603--1912635	3	11.0	3	93	0	57	3	30	0	66	1.06
1919062--1919122	21	2.8	22	85	5	70	22	36	24	16	1.94
1921066--1921101	17	2.1	17	89	0	54	13	0	22	63	1.29
1924177--1924223	22	2.1	22	96	0	85	55	8	2	34	1.42
1924383--1924473	31	3.0	31	96	3	168	32	6	17	42	1.75
1924538--1924604	19	3.5	19	87	0	89	38	10	13	37	1.79
1924710--1924751	21	2.0	21	90	0	66	23	19	28	28	1.98
1924780--1924819	20	1.9	21	85	10	55	37	35	10	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925034--1925103	34	2.1	32	86	5	95	31	15	30	22	1.95
1926329--1926361	15	2.2	15	94	0	57	51	15	27	6	1.66
1934457--1934508	19	2.7	19	78	0	59	23	23	17	36	1.95
1937459--1937528	34	2.1	32	89	5	104	21	31	15	31	1.95
1937744--1937783	21	1.9	22	90	10	66	12	10	40	37	1.77
1937812--1937853	21	2.0	21	90	0	66	26	23	23	26	2.00
1937958--1938024	19	3.6	18	88	8	89	37	13	10	38	1.79
1938089--1938148	29	2.0	31	90	6	97	41	15	6	36	1.73
1939468--1939515	23	2.1	23	88	0	69	35	12	18	33	1.89
1939891--1939930	21	2.0	21	85	5	55	47	7	15	30	1.72
1939943--1940005	23	2.7	23	92	0	99	38	20	4	36	1.74
1940405--1940491	39	2.2	39	89	4	131	18	16	18	47	1.83
1940748--1940784	18	2.1	18	89	0	56	51	10	5	32	1.60
1941173--1941223	25	2.0	25	92	0	84	39	19	7	33	1.81
1941499--1941561	23	2.7	23	92	0	99	38	20	4	36	1.74
1941989--1942051	23	2.7	23	92	0	99	38	20	4	36	1.74
1941324--1942882	490	3.2	490	97	1	2967	40	12	7	39	1.71
1942477--1942535	23	2.6	23	91	0	91	38	18	5	37	1.73
1942881--1942946	25	2.6	25	80	0	87	42	13	9	34	1.76
1946100--1946164	23	2.8	23	86	4	96	43	18	4	33	1.71
1946951--1947028	18	4.6	18	80	15	85	20	50	17	11	1.77
1946975--1947034	13	4.2	13	78	19	66	16	48	20	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946956--1947034	31	2.5	31	91	0	131	18	48	18	13	1.81
1948357--1948392	18	2.0	18	88	0	54	52	0	16	30	1.44
1949516--1949624	24	4.5	24	74	4	94	21	14	16	47	1.82
1949785--1949819	2	17.5	2	100	0	70	48	0	0	51	1.00
1951768--1951824	18	3.2	18	94	0	105	19	50	19	10	1.75
1951816--1951847	7	4.4	7	92	7	55	12	34	28	25	1.92
1951813--1951846	15	2.3	15	100	0	68	14	35	26	23	1.94
1953157--1953192	18	2.0	18	88	0	54	52	0	16	30	1.44
1954314--1954422	24	4.5	24	74	4	94	21	14	16	47	1.82
1954582--1954614	2	16.5	2	100	0	66	48	0	0	51	1.00
1956764--1956829	3	22.0	3	71	0	51	22	31	6	39	1.79
1956777--1956841	12	5.4	12	84	0	85	20	32	9	38	1.84
1956765--1956841	36	2.1	36	90	0	118	20	32	7	38	1.81
1956777--1956844	6	11.3	6	75	0	55	19	32	8	39	1.82
1958307--1959670	200	6.9	200	96	1	2522	31	17	14	36	1.90
1958307--1959667	396	3.4	398	96	1	2519	31	17	14	36	1.90
1958307--1959670	596	2.3	593	97	1	2545	31	17	14	36	1.90
1959789--1959837	19	2.6	19	93	0	80	57	10	2	30	1.43
1961624--1961687	33	1.9	33	90	0	101	23	48	0	28	1.51
1961723--1961766	21	2.1	21	91	0	70	15	31	11	40	1.83
1963986--1964042	20	2.9	20	80	12	64	21	15	8	54	1.68
1964167--1964213	20	2.3	20	89	10	78	17	17	10	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1964262--1965896	229	7.1	229	97	0	3028	39	8	7	45	1.63
1964262--1965896	685	2.4	686	97	0	3053	39	8	7	45	1.63
1971555--1971597	3	14.3	3	85	0	59	0	39	0	60	0.97
1971555--1971597	12	3.6	12	90	0	68	0	39	0	60	0.97
1973338--1973380	20	2.2	20	87	8	61	53	0	0	46	1.00
1973561--1973610	20	2.5	19	80	6	55	50	2	4	44	1.32
1976615--1976679	27	2.3	29	87	10	100	47	33	6	12	1.66
1980315--1980359	2	23.0	2	95	4	83	51	0	0	48	1.00
1981138--1981443	143	2.1	144	86	3	454	20	26	22	31	1.98
1982487--1982535	15	3.1	15	76	5	53	26	46	0	26	1.53
1982487--1982543	17	3.5	16	76	9	62	22	45	0	31	1.53
1984811--1984860	20	2.5	20	86	0	64	48	12	2	38	1.52
1988382--1988444	20	3.2	20	68	4	56	25	22	11	41	1.86
1988949--1989013	28	2.3	29	81	7	71	40	1	1	56	1.18
1989327--1989359	3	11.0	3	100	0	66	66	0	0	33	0.92
1990670--1990771	3	34.0	3	79	7	100	60	1	0	37	1.08
1990857--1991244	139	2.8	139	89	2	569	24	21	18	34	1.96
1992650--1992734	37	2.2	39	85	6	111	28	27	14	30	1.95
1996802--1996840	20	2.0	20	90	10	62	46	17	20	15	1.84
2000125--2000166	22	1.9	22	90	9	68	61	0	0	38	0.96
2000125--2000166	19	2.2	19	83	8	50	61	0	0	38	0.96
2001075--2001123	20	2.5	20	100	0	98	10	12	44	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2001247--2001319	21	3.5	21	100	0	146	26	21	15	36	1.93
2004597--2004663	29	2.3	29	82	10	82	19	11	11	56	1.66
2004729--2004811	41	2.0	41	83	4	105	28	15	4	50	1.64
2006234--2006264	16	2.0	16	93	6	55	45	3	12	38	1.59
2007011--2007049	20	2.0	20	94	0	69	43	5	20	30	1.73
2008049--2008088	20	2.0	21	85	5	55	55	5	10	30	1.54
2015211--2016401	257	4.6	256	89	1	1708	33	17	15	33	1.91
2015211--2016404	513	2.3	513	88	2	1727	33	17	15	33	1.91
2018515--2018556	15	2.6	16	82	17	52	61	0	4	33	1.17
2019124--2019157	16	2.2	16	94	5	61	61	0	0	38	0.96
2020440--2020508	3	22.7	3	79	8	77	63	4	1	30	1.22
2020647--2020915	83	3.3	83	86	5	359	25	18	19	36	1.94
2021237--2021337	42	2.4	41	80	6	114	33	19	22	23	1.97
2020973--2021452	250	1.9	250	90	1	757	33	17	16	32	1.92
2023777--2024006	105	2.2	105	89	3	340	34	15	12	37	1.85
2029431--2029460	15	1.9	15	93	6	51	60	0	0	40	0.97
2030203--2030250	25	1.9	25	83	8	62	4	18	14	62	1.47
2030770--2030811	3	13.7	3	90	5	66	64	2	0	33	1.07
2036153--2036185	13	2.5	13	95	0	57	63	0	3	33	1.10
2039546--2039583	2	19.0	2	100	0	76	50	0	0	50	1.00
2048517--2048576	31	1.9	31	86	0	84	41	15	26	16	1.88
2048688--2048729	22	1.9	22	90	0	66	21	9	23	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10

The End!