genome.fa.s8504.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008504.1 Hibiscus syriacus cultivar Beakdansim tig00111356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2056749

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264011--264146	40	3.4	40	82	11	140	44	10	3	41	1.56
264096--264206	46	2.3	49	84	10	147	43	8	6	42	1.59
264196--264254	24	2.5	24	97	2	111	37	11	5	45	1.63
264219--264437	39	5.6	39	74	14	154	40	10	4	44	1.59
270689--270727	20	1.9	21	85	15	55	66	5	2	25	1.25
271270--271552	147	1.9	146	90	2	451	36	8	17	37	1.80
272474--272534	13	4.6	14	71	20	51	45	0	3	50	1.17
272475--272523	24	2.0	25	88	11	75	44	0	2	53	1.12
272498--272536	17	2.5	15	80	15	51	43	0	5	51	1.24
272527--272631	2	55.5	2	77	17	91	45	0	3	50	1.19
279454--279858	102	4.0	102	88	2	595	27	18	23	30	1.97
279474--279842	202	1.8	202	91	0	603	25	18	25	31	1.97
281024--281056	15	2.1	16	88	5	50	21	0	15	63	1.30
286820--290082	654	5.0	654	97	0	5982	36	15	12	35	1.85
298456--298660	43	4.8	43	87	3	272	17	24	24	33	1.96
298456--298660	84	2.4	84	83	3	268	17	24	24	33	1.96
303407--303673	43	6.3	43	88	2	396	17	26	23	32	1.97
303407--303682	85	3.3	85	89	3	405	17	26	23	32	1.96
303407--303673	128	2.1	127	92	4	441	17	26	23	32	1.97
304536--304573	19	2.0	20	89	5	60	28	0	7	63	1.23
308313--308354	21	2.0	21	95	0	75	30	9	7	52	1.61
308349--308448	33	3.0	33	91	0	146	31	6	15	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309025--309064	20	2.0	20	95	4	73	57	5	15	22	1.57
309217--309291	38	2.0	37	84	5	98	48	4	1	46	1.29
310799--311085	136	2.1	137	81	5	332	31	13	12	42	1.82
321503--321726	111	2.0	111	94	3	398	38	5	19	36	1.75
322754--323054	54	5.6	54	87	2	415	28	18	19	32	1.96
323407--323670	46	5.8	46	84	3	304	44	8	23	23	1.80
323408--323664	91	2.8	88	82	7	291	44	8	24	22	1.81
323409--323670	137	1.9	135	84	4	348	45	8	23	22	1.80
323644--323801	45	3.5	45	75	7	133	41	10	20	28	1.84
325991--326047	24	2.4	24	93	0	96	49	15	15	19	1.80
327571--327614	22	2.0	22	90	0	70	27	13	27	31	1.94
327580--327624	22	2.1	21	84	8	56	31	15	22	31	1.95
327943--328281	54	6.3	54	84	0	453	28	19	19	32	1.96
328269--328374	55	1.9	55	83	7	135	33	19	18	27	1.96
328716--328915	46	4.3	46	89	0	301	46	8	24	22	1.78
332530--332877	177	2.0	173	92	2	579	30	10	12	46	1.75
334515--334563	20	2.6	19	80	6	64	28	16	26	28	1.97
335957--336058	51	2.0	51	96	0	186	26	26	8	38	1.85
336186--336501	41	7.7	42	70	12	192	31	16	18	33	1.93
336195--336427	82	2.9	80	80	5	254	30	17	18	32	1.95
336186--336461	42	6.7	42	69	17	141	31	16	18	33	1.93
336439--336566	41	3.1	41	76	2	141	28	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340278--340570	42	7.0	41	77	6	268	24	24	18	32	1.97
340281--340570	85	3.5	84	78	8	288	24	23	18	32	1.97
340665--340722	23	2.6	23	97	2	109	46	24	10	18	1.80
343374--343417	21	2.1	21	82	0	52	34	15	4	45	1.67
345977--346016	20	2.0	20	85	9	55	35	0	2	62	1.09
353287--353424	43	3.2	43	93	0	222	15	16	34	34	1.90
353977--354102	60	2.1	60	81	8	141	36	12	13	37	1.83
355598--355680	30	2.7	31	78	14	93	56	13	14	15	1.67
355634--355738	30	3.5	29	74	10	86	54	11	13	20	1.70
357160--357196	3	12.7	3	94	5	67	67	0	0	32	0.91
357391--357741	130	2.7	132	79	5	361	26	17	31	24	1.97
357386--357736	134	2.7	131	80	2	364	25	18	30	25	1.98
357747--357843	28	3.4	28	84	12	117	44	13	16	25	1.84
358296--358473	96	1.9	95	82	5	225	38	15	21	25	1.92
359145--359176	14	2.2	15	94	5	57	21	3	28	46	1.66
359287--359329	22	2.0	21	90	4	68	20	30	9	39	1.84
360163--360199	2	18.5	2	100	0	74	48	0	0	51	1.00
360766--360815	25	2.0	26	84	4	66	52	0	4	44	1.20
361076--361102	2	13.5	2	100	0	54	51	0	0	48	1.00
361601--361705	6	18.2	6	68	18	53	53	0	5	40	1.31
361604--361703	16	5.9	16	69	17	58	53	1	6	40	1.32
361839--361933	39	2.4	39	94	1	163	44	15	9	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370210--370367	63	2.5	64	82	7	171	35	23	18	22	1.96
370863--370944	22	3.7	22	93	3	130	18	15	32	32	1.92
370929--370963	18	1.9	18	88	0	52	22	20	34	22	1.97
376493--376556	31	2.1	31	93	0	110	50	7	0	42	1.31
376491--376550	18	3.6	17	70	21	56	53	8	0	38	1.31
378023--378062	21	1.9	21	94	0	71	45	2	0	52	1.14
378344--378409	28	2.4	28	84	0	87	46	1	1	50	1.20
378715--378779	32	2.0	32	90	0	103	20	21	32	26	1.97
378727--378786	15	3.9	15	76	8	66	20	25	31	23	1.98
379116--379151	14	2.6	14	95	0	63	13	25	44	16	1.85
379932--379976	23	2.0	23	86	4	65	17	15	6	60	1.56
382285--382339	20	2.8	20	88	2	76	34	10	3	50	1.55
384066--384094	14	2.1	14	100	0	58	72	20	0	6	1.07
386418--386522	30	3.4	30	89	9	158	58	9	7	24	1.56
387207--387249	3	14.7	3	80	4	52	34	4	0	60	1.17
394530--394575	4	12.2	4	82	13	62	52	21	0	26	1.47
394538--394573	18	2.1	17	94	5	63	52	22	0	25	1.47
394985--395181	105	1.9	105	84	4	263	29	19	10	39	1.86
395235--395389	29	5.5	29	89	3	228	30	9	12	47	1.73
395355--395404	26	2.0	25	88	4	73	26	8	14	52	1.68
395374--395491	61	2.0	59	86	3	164	27	11	16	43	1.84
395374--395529	59	2.6	60	79	4	154	30	9	16	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395991--396086	35	2.7	35	96	3	176	33	22	10	33	1.88
396061--396199	66	2.1	65	80	5	154	26	22	14	36	1.92
396440--396634	46	4.4	46	74	13	194	26	28	19	25	1.99
396476--396676	40	4.8	40	75	13	190	25	31	18	24	1.98
396476--396707	40	5.5	42	73	13	129	26	31	17	24	1.97
396424--396810	129	3.0	128	92	3	603	26	29	18	25	1.98
397027--397069	3	14.7	3	80	4	52	34	4	0	60	1.17
413191--413269	23	3.5	22	79	8	88	25	20	26	27	1.99
416839--418583	909	1.9	898	87	3	2168	25	20	12	41	1.88
420109--420154	20	2.3	20	88	0	65	19	19	32	28	1.96
433252--433294	22	2.0	22	95	0	77	20	44	23	11	1.84
433367--433431	29	2.2	30	83	5	78	50	6	12	30	1.64
442906--442934	14	2.1	14	100	0	58	41	20	6	31	1.79
442908--442944	14	2.9	13	88	11	51	45	18	8	27	1.77
443961--443994	5	7.2	5	96	3	54	35	0	0	64	0.94
445039--445111	10	7.0	10	69	18	51	20	4	2	72	1.14
445035--445111	22	3.8	20	73	20	63	20	3	2	72	1.12
445219--445245	12	2.2	12	100	0	54	37	0	0	62	0.95
445815--445884	20	3.8	20	76	21	80	31	17	5	45	1.71
445830--445856	14	1.9	14	100	0	54	40	14	7	37	1.74
446312--446392	40	2.0	40	100	0	162	50	7	9	32	1.63
446586--446649	27	2.4	27	83	0	83	46	3	1	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446822--446885	31	2.0	31	82	8	76	28	15	15	40	1.88
449235--449265	14	2.2	14	100	0	62	41	19	12	25	1.87
456340--456404	31	2.1	31	83	11	80	32	4	6	56	1.44
459861--459954	46	2.0	46	100	0	188	27	15	14	41	1.87
463774--463813	16	2.5	15	88	8	53	60	0	37	2	1.11
468238--468304	22	3.0	22	86	0	80	32	20	22	23	1.98
474970--475036	22	3.0	22	86	0	89	32	20	23	22	1.98
482790--482915	64	2.0	65	83	10	161	42	3	7	46	1.49
482869--482893	11	2.3	11	100	0	50	40	8	8	44	1.63
482844--483127	74	3.8	73	83	9	349	44	4	5	45	1.47

Tables:   1   2   3   4   5   6   7   8   9   10