genome.fa.s8504.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008504.1 Hibiscus syriacus cultivar Beakdansim tig00111356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2056749

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482844--483127	38	7.6	36	85	6	325	44	4	5	45	1.47
483106--483162	21	2.6	21	81	15	71	42	5	5	47	1.48
483106--483146	19	2.0	20	90	9	66	43	4	2	48	1.37
483138--483197	31	1.9	31	83	6	77	46	1	5	46	1.34
483219--483260	14	3.1	13	83	16	50	28	4	0	66	1.12
483210--483260	24	2.0	24	81	11	57	31	3	0	64	1.11
483224--483265	13	3.2	13	87	12	59	23	7	0	69	1.13
483224--483268	14	3.3	14	82	14	58	24	6	0	68	1.13
489420--489501	21	3.8	21	76	9	67	19	24	30	25	1.98
489420--489490	23	3.2	22	82	9	83	19	22	33	23	1.97
499777--500599	165	5.0	165	85	1	972	30	24	20	25	1.99
499571--500491	412	2.2	409	81	3	1105	30	24	19	25	1.98
499571--500602	84	12.5	83	76	5	827	30	24	20	25	1.99
501070--501490	75	5.9	74	76	16	258	42	4	7	44	1.53
501197--501221	11	2.3	11	100	0	50	40	8	8	44	1.63
501107--501491	38	10.8	37	76	16	298	43	4	6	45	1.51
501227--501323	31	3.2	30	95	2	169	41	5	6	47	1.51
501257--501491	67	3.3	71	83	11	288	44	5	5	45	1.49
501396--501508	34	3.5	31	73	20	106	45	4	5	45	1.46
501396--501522	34	3.9	31	70	17	80	46	3	4	44	1.42
501257--501525	67	3.9	68	78	12	226	45	4	5	44	1.47
501561--501590	13	2.2	14	94	5	53	13	10	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503091--503132	14	2.9	14	80	16	50	23	0	0	76	0.79
504446--504506	32	1.9	32	89	0	95	24	14	18	42	1.88
505138--505192	28	2.0	27	82	10	67	47	0	0	52	1.00
505386--505443	20	2.7	23	73	13	68	56	3	3	36	1.33
507984--508017	6	5.7	6	89	0	50	52	14	0	32	1.42
508176--508631	132	3.4	132	82	5	532	28	15	24	31	1.95
510692--511109	209	2.0	209	95	0	748	28	19	16	35	1.93
520604--520643	18	2.2	18	86	0	53	55	0	0	45	0.99
522589--522613	8	3.1	8	100	0	50	64	0	0	36	0.94
524345--524408	31	2.2	28	79	15	69	29	23	23	23	1.99
524877--524934	31	1.9	30	82	10	73	24	10	8	56	1.60
535710--535772	19	3.3	19	77	6	74	46	6	15	31	1.71
535709--535785	38	2.0	38	82	5	93	46	6	16	29	1.72
535711--535830	19	6.3	19	76	1	71	48	4	15	31	1.64
535847--535890	12	3.6	12	81	3	52	50	2	20	27	1.60
541668--541719	20	2.6	20	96	0	95	21	21	23	34	1.97
541932--542003	20	3.5	20	77	7	65	30	26	15	27	1.96
556219--556292	18	4.1	18	94	0	121	47	5	10	36	1.62
556190--556292	54	1.9	54	84	7	138	45	5	11	36	1.65
556222--556306	36	2.4	36	90	2	127	45	7	9	37	1.64
556223--556306	18	4.7	18	88	4	109	46	7	9	36	1.64
556280--556381	18	5.7	18	79	4	89	44	15	8	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563666--563703	18	2.1	18	85	9	51	65	10	7	15	1.45
563832--563858	10	2.7	10	100	0	54	70	0	0	29	0.88
565679--565716	3	12.7	3	100	0	76	65	0	0	34	0.93
565891--566427	137	3.9	137	88	1	774	26	16	27	29	1.97
566330--566765	112	3.9	112	82	4	520	28	15	25	30	1.96
566330--566766	115	3.9	111	83	3	518	28	15	25	30	1.96
566346--566766	226	1.9	227	87	3	625	28	15	25	30	1.96
566772--566887	37	3.1	37	89	0	178	20	16	22	40	1.91
570975--571052	7	11.1	7	84	10	97	0	11	0	88	0.52
570978--571052	10	7.7	10	85	7	93	0	10	0	89	0.49
570987--571052	20	3.2	20	91	2	105	0	9	0	90	0.44
570975--571075	29	3.3	30	85	10	118	0	15	0	82	0.79
570975--571075	21	5.2	19	78	16	91	0	15	0	82	0.79
570986--571052	1	67.0	1	81	0	80	0	8	0	91	0.43
570978--571075	41	2.3	41	84	3	124	1	15	1	82	0.78
574861--574962	42	2.5	41	75	7	107	26	24	19	29	1.98
574860--574974	42	2.8	40	71	10	106	26	24	18	30	1.98
575095--575164	20	3.5	20	67	16	54	24	21	21	32	1.98
575094--575177	42	2.0	42	88	0	123	28	20	21	29	1.98
574773--575219	233	1.9	233	91	0	725	32	17	17	32	1.93
575239--576151	136	6.8	136	83	3	1116	32	25	15	27	1.95
575230--576151	404	2.3	403	84	4	1212	32	25	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575232--576151	271	3.4	270	87	1	1351	32	25	14	27	1.95
583960--583992	3	11.0	3	93	0	57	66	3	0	30	1.06
587666--587703	18	2.1	18	100	0	76	31	15	5	47	1.68
596909--596958	25	2.0	25	100	0	100	24	8	20	48	1.76
597631--597657	10	2.7	10	100	0	54	62	7	0	29	1.22
599199--599270	24	3.0	24	81	0	90	52	16	11	19	1.73
599199--599307	48	2.3	47	80	6	112	50	14	13	21	1.77
605538--605604	24	2.8	24	76	0	71	52	17	7	22	1.70
608620--608854	54	4.4	54	84	1	283	33	20	18	27	1.96
613020--613053	17	2.1	16	88	5	50	76	0	8	14	1.01
613528--613577	24	2.1	24	85	7	66	60	12	2	26	1.43
616676--616718	22	2.0	22	95	0	77	30	13	34	20	1.92
617035--617347	54	5.8	54	86	0	421	33	20	18	27	1.96
618586--618627	2	21.0	2	95	0	75	47	2	0	50	1.14
622267--622322	20	2.8	21	74	17	64	30	17	14	37	1.90
623655--623702	17	2.8	17	100	0	96	16	47	22	12	1.80
628375--628401	14	1.9	14	100	0	54	25	0	22	51	1.48
642828--642942	15	7.7	15	87	0	167	30	6	20	42	1.78
648484--648567	15	5.6	15	85	0	114	29	4	21	44	1.73
648683--648744	23	2.7	23	79	0	70	20	20	24	33	1.97
648670--648769	46	2.1	47	83	8	125	20	24	23	33	1.97
648746--648798	24	2.2	24	93	0	88	20	22	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659579--659617	17	2.2	18	90	4	62	48	10	25	15	1.76
673692--673789	45	2.2	45	85	3	128	36	11	24	27	1.89
683313--683342	15	2.0	15	93	0	51	63	3	20	13	1.43
685296--685357	25	2.4	25	81	7	72	37	12	8	41	1.73
685400--685459	31	2.0	30	87	9	86	36	1	25	36	1.66
685683--685741	23	2.6	23	88	0	91	16	27	28	27	1.97
691507--691553	19	2.5	19	100	0	94	29	17	29	23	1.97
692252--692297	23	2.0	23	91	0	74	21	21	21	34	1.97
694881--694906	2	13.0	2	100	0	52	50	0	0	50	1.00
695207--695261	29	1.9	28	82	10	67	41	5	16	36	1.71
705328--705381	27	2.0	27	82	7	65	31	7	9	51	1.61
706086--706310	59	3.8	59	74	5	188	36	20	9	34	1.85
710531--710843	73	4.3	72	81	9	386	40	11	19	28	1.85
710701--710874	38	4.7	37	74	7	149	39	10	19	30	1.86
710735--710879	36	4.0	36	72	8	123	41	10	17	30	1.83
713298--713390	23	4.1	23	74	1	80	19	23	25	31	1.98
713290--713382	46	2.0	46	85	0	123	20	25	22	31	1.98
713614--713659	2	23.0	2	100	0	92	50	0	0	50	1.00
739971--740010	21	1.9	21	89	0	62	25	40	25	10	1.86
748349--748426	8	10.8	8	72	22	57	35	0	0	64	0.94
750592--750647	23	2.4	23	100	0	112	19	8	33	37	1.83
760632--760860	55	4.2	55	81	3	250	31	18	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760931--760973	20	2.2	20	95	0	77	32	11	23	32	1.90
762470--762513	23	1.9	23	90	0	70	31	29	9	29	1.88
767817--767862	13	3.6	13	77	13	51	2	19	2	76	1.00
767816--767865	25	2.0	24	81	14	57	2	22	2	74	1.03
774215--774258	23	1.9	23	90	0	70	34	22	9	34	1.86
774929--774988	22	2.9	20	83	9	75	25	28	15	31	1.95
776588--776636	2	24.5	2	100	0	98	48	0	0	51	1.00
782944--782988	23	2.0	23	90	0	72	24	26	26	22	2.00
784690--784850	64	2.5	63	85	8	200	26	21	18	33	1.96
786061--786108	22	2.0	24	84	11	64	52	2	0	45	1.12

Tables:   1   2   3   4   5   6   7   8   9   10