genome.fa.s8504.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008504.1 Hibiscus syriacus cultivar Beakdansim tig00111356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2056749

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404442--1404510	2	34.5	2	100	0	138	49	0	0	50	1.00
1404517--1404581	25	2.6	25	87	0	94	27	20	23	29	1.98
1410973--1411011	19	2.0	20	90	9	64	30	20	7	41	1.80
1412770--1412821	21	2.4	22	78	15	54	13	7	1	76	1.07
1413402--1413438	14	2.7	14	84	16	51	21	13	0	64	1.27
1416393--1416430	15	2.7	15	88	8	53	18	2	2	76	1.02
1416714--1416746	16	2.1	16	94	0	57	33	21	12	33	1.90
1419269--1419301	13	2.6	13	95	4	59	15	6	0	78	0.93
1423261--1423297	15	2.5	15	90	0	56	40	10	18	29	1.85
1423428--1423538	23	4.7	23	74	3	80	24	22	23	29	1.99
1427993--1428074	20	4.3	18	79	15	76	32	13	29	24	1.93
1428588--1428635	15	3.3	15	77	13	55	43	8	16	31	1.78
1428754--1428865	46	2.4	45	75	5	116	19	22	24	33	1.97
1428754--1428878	23	5.4	24	77	4	105	20	21	23	34	1.97
1436327--1436368	2	21.0	2	100	0	84	50	0	0	50	1.00
1437993--1439130	82	14.1	82	82	4	1181	23	18	20	37	1.94
1437993--1439126	163	7.0	164	81	4	1191	23	17	20	37	1.94
1437990--1439130	245	4.7	244	80	5	1228	24	17	20	37	1.94
1439162--1439611	167	2.7	166	84	5	590	27	17	19	35	1.94
1439407--1439554	78	1.9	78	84	4	201	27	16	18	38	1.91
1439426--1439573	77	1.9	79	80	8	178	27	16	19	36	1.93
1439625--1440002	62	6.1	62	73	12	258	33	15	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439844--1440020	63	2.8	62	81	1	201	36	12	22	28	1.91
1439973--1440058	38	2.3	38	79	4	93	37	11	19	31	1.88
1449725--1449838	60	1.9	60	83	3	149	37	18	14	29	1.90
1449941--1450048	3	36.0	3	98	0	153	33	0	6	60	1.23
1453663--1453820	21	7.8	20	72	7	86	38	25	17	18	1.92
1453787--1454057	20	13.5	20	82	2	274	39	23	16	19	1.92
1454740--1454786	24	2.0	24	87	8	69	25	14	21	38	1.92
1457268--1457375	33	3.2	33	87	7	173	46	19	21	12	1.83
1457282--1457432	19	8.7	19	72	21	143	45	18	21	15	1.86
1457310--1457432	52	2.3	52	95	1	219	44	17	22	15	1.86
1457441--1457538	19	5.4	19	84	13	143	14	22	17	45	1.84
1457422--1457538	53	2.2	53	96	1	218	13	24	17	43	1.86
1457645--1457681	14	2.6	14	91	0	65	45	21	0	32	1.52
1459662--1459718	14	3.7	14	77	20	60	45	22	21	10	1.82
1459643--1459735	33	2.8	33	95	0	168	47	21	20	10	1.80
1459606--1459740	19	7.6	19	76	16	128	45	23	19	11	1.82
1459736--1459864	19	7.3	19	75	17	125	8	17	28	45	1.77
1459736--1459827	33	2.8	33	93	3	150	7	18	28	45	1.76
1459912--1460287	93	4.1	93	98	0	718	46	19	12	22	1.83
1462008--1462058	19	2.7	19	93	0	84	47	21	19	11	1.81
1462070--1462126	14	3.7	14	75	20	60	8	24	22	43	1.81
1462054--1462134	33	2.5	33	95	0	144	8	22	22	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462111--1462186	21	3.7	21	83	3	109	11	25	17	46	1.82
1462110--1462187	41	1.9	41	97	0	147	12	25	16	44	1.83
1462266--1462336	33	2.2	33	92	0	115	47	18	22	11	1.80
1462518--1462572	22	2.5	22	78	0	65	20	16	38	25	1.92
1462720--1462873	20	7.7	20	81	7	168	18	18	26	37	1.93
1462719--1462873	40	3.8	40	82	4	186	18	18	26	37	1.93
1462860--1462942	21	4.0	21	73	6	78	25	16	24	33	1.96
1462840--1462938	42	2.4	43	77	11	100	21	18	23	37	1.94
1463636--1463722	44	2.0	44	84	8	115	49	5	3	41	1.43
1463641--1463733	44	2.1	44	82	7	109	50	5	2	41	1.37
1470222--1470269	23	2.1	23	88	0	69	35	12	18	33	1.89
1470309--1470983	334	2.0	336	95	1	1219	38	10	7	43	1.68
1471026--1471077	23	2.3	22	90	6	77	44	19	1	34	1.62
1471036--1471098	23	2.7	23	90	0	90	38	19	6	36	1.77
1471502--1471588	39	2.2	39	93	0	147	18	13	19	48	1.81
1471847--1471883	18	2.1	18	89	0	56	51	10	5	32	1.60
1472820--1472885	33	2.0	33	90	0	105	22	48	0	28	1.51
1472919--1472983	21	3.1	21	81	0	76	15	29	13	41	1.86
1475207--1475249	20	2.3	18	85	14	61	20	16	11	51	1.75
1475212--1475263	20	2.6	19	82	8	68	17	15	11	55	1.68
1475378--1475423	20	2.3	20	89	10	76	17	17	10	54	1.70
1475493--1475933	225	2.0	226	94	1	769	40	7	7	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476394--1476464	25	2.8	25	86	2	88	45	4	16	33	1.67
1479037--1479086	21	2.4	21	89	0	73	56	4	18	22	1.58
1480568--1480620	14	4.1	14	76	18	60	9	13	24	52	1.69
1480575--1480633	24	2.5	24	91	5	93	10	10	20	59	1.58
1480575--1480644	24	2.9	23	85	10	79	11	8	18	61	1.54
1480989--1481024	16	2.2	16	95	0	63	11	11	19	58	1.62
1482978--1483031	21	2.6	21	87	0	81	40	29	18	11	1.85
1482943--1483031	42	2.1	42	85	4	117	41	28	16	13	1.86
1483581--1484312	81	9.1	81	88	1	1051	32	20	11	35	1.89
1484720--1484901	94	1.9	95	89	3	287	23	24	14	37	1.92
1490905--1491471	81	7.1	81	87	3	736	33	21	9	35	1.86
1493571--1493637	2	33.5	2	100	0	134	49	0	0	50	1.00
1494642--1494675	12	2.8	12	90	0	50	35	2	0	61	1.11
1497249--1497638	54	7.2	54	88	5	513	33	21	17	27	1.96
1497249--1497638	162	2.4	162	88	2	570	33	21	17	27	1.96
1497855--1497905	22	2.3	22	100	0	102	37	13	3	45	1.63
1497985--1498025	20	2.0	21	90	9	66	31	24	12	31	1.92
1497995--1498038	22	2.0	22	86	0	61	31	25	11	31	1.91
1499252--1499288	19	1.9	19	88	0	56	40	8	16	35	1.78
1503823--1503990	73	2.3	72	84	9	216	46	9	15	28	1.77
1503823--1503998	36	4.9	36	79	6	178	46	9	14	28	1.76
1505287--1505482	99	2.0	99	83	2	250	31	15	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1505691--1505749	28	2.1	29	87	9	86	27	6	3	62	1.36
1506800--1506923	23	5.3	23	77	0	104	30	22	9	37	1.86
1506800--1506908	46	2.4	46	84	3	130	29	22	9	39	1.85
1513934--1513977	18	2.5	16	80	20	52	15	0	6	77	0.97
1513935--1513978	19	2.4	18	81	11	54	15	0	6	77	0.97
1515224--1515266	21	2.0	21	86	0	59	41	13	13	30	1.84
1515369--1515469	37	2.7	37	87	0	130	41	12	14	30	1.84
1515889--1515934	14	3.4	14	77	22	53	28	0	0	71	0.86
1515889--1515934	22	2.0	23	88	12	69	28	0	0	71	0.86
1515980--1516029	13	3.5	13	78	21	55	24	8	2	66	1.29
1516099--1516163	33	1.9	34	84	9	89	26	3	4	66	1.26
1516182--1516248	20	3.4	19	78	15	73	22	1	1	74	0.98
1516131--1516241	22	4.9	22	69	21	68	27	3	0	68	1.12
1516322--1516373	18	2.7	19	82	5	61	19	7	0	73	1.07
1520876--1520956	9	8.9	9	74	14	60	83	7	7	1	0.85
1520875--1520958	1	84.0	1	69	0	51	84	7	7	1	0.83
1520993--1521336	172	2.0	171	95	0	625	37	20	17	25	1.94
1521730--1521773	22	2.0	22	90	0	70	38	20	9	31	1.84
1521736--1521780	22	2.0	22	86	0	63	37	24	11	26	1.89
1522730--1524323	106	15.0	106	91	0	2476	34	24	17	22	1.96
1525077--1525147	37	1.9	37	100	0	142	42	14	14	29	1.84
1525078--1525178	37	2.7	37	89	0	139	42	12	12	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1525578--1525690	2	58.5	2	75	10	74	36	1	0	61	1.13
1525610--1525651	17	2.5	17	88	11	61	21	2	0	76	0.90
1525897--1525950	13	4.1	13	79	15	58	20	1	0	77	0.86
1525898--1525943	9	5.3	9	89	5	69	19	2	0	78	0.86
1525883--1525943	4	14.8	4	80	13	61	22	1	0	75	0.89
1525811--1525950	22	6.4	22	70	17	67	25	3	1	69	1.13
1525809--1525948	12	13.4	10	68	25	53	25	3	1	69	1.13
1526033--1526078	19	2.5	19	83	13	60	17	8	0	73	1.07
1529016--1529648	316	2.0	310	94	1	1104	35	16	20	27	1.94
1536163--1536212	13	3.6	13	78	21	57	72	6	0	22	1.07

Tables:   1   2   3   4   5   6   7   8   9   10