genome.fa.s8511.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008511.1 Hibiscus syriacus cultivar Beakdansim tig00111366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2221980

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1077 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237237--237419	66	2.8	63	74	8	161	38	15	19	26	1.91
237589--237663	31	2.4	30	82	8	80	40	13	14	32	1.85
237696--237775	40	2.0	40	85	4	108	36	11	21	31	1.88
237757--237881	64	2.0	64	87	1	180	42	11	15	31	1.82
237779--238002	120	1.9	119	81	8	276	42	12	14	30	1.83
238048--238272	67	3.5	64	84	5	256	45	12	11	30	1.77
238113--238239	37	3.6	37	68	16	108	45	11	11	31	1.76
238112--238272	67	2.4	65	90	4	268	45	12	9	31	1.75
238150--238323	95	1.8	93	85	4	242	42	14	10	32	1.79
238217--238285	28	2.5	28	90	4	104	43	14	7	34	1.73
238372--238643	29	9.4	29	77	11	213	47	14	10	27	1.77
238342--238662	149	2.2	149	98	0	626	46	14	12	26	1.80
238861--238981	36	3.3	36	76	10	122	36	9	19	34	1.85
238886--239003	36	3.4	36	80	8	111	35	12	21	30	1.91
238955--239185	103	2.3	103	84	8	294	36	11	21	30	1.89
239159--239240	36	2.3	36	78	4	94	31	12	19	36	1.89
239159--239253	36	2.6	36	78	3	93	35	11	17	34	1.86
239103--239420	167	1.9	165	81	7	385	37	11	17	33	1.87
239343--239460	36	3.3	35	81	9	139	38	11	16	33	1.85
241208--241263	14	3.6	16	74	16	55	1	21	3	73	1.08
243074--243135	32	2.0	32	96	3	117	61	9	14	14	1.57
246865--246924	9	6.8	8	80	19	50	66	1	0	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246873--246927	3	17.3	3	85	14	67	67	0	0	32	0.91
246865--246929	19	3.5	17	82	17	76	67	1	0	30	1.00
246875--246928	10	5.2	10	83	16	74	68	0	0	31	0.90
246873--246927	16	3.4	16	83	16	78	67	0	0	32	0.91
250083--250118	16	2.2	16	100	0	72	50	13	25	11	1.75
254060--254325	132	2.0	132	94	0	469	35	17	13	33	1.88
254544--254615	32	2.2	32	85	0	90	37	13	23	25	1.92
264686--264729	3	14.7	3	95	0	79	31	2	0	65	1.05
269329--269466	69	2.0	70	88	4	208	34	14	18	31	1.91
270605--270670	33	2.0	33	100	0	132	18	6	12	63	1.48
272915--272991	30	2.6	30	100	0	154	40	0	6	53	1.27
272915--272989	15	5.0	15	75	12	82	40	0	6	53	1.27
281878--281906	13	2.2	13	100	0	58	24	6	6	62	1.45
282667--282719	26	2.0	26	86	13	74	39	3	0	56	1.17
285423--285449	6	4.5	6	100	0	54	33	51	14	0	1.43
286077--286276	21	9.8	19	71	11	112	35	23	18	23	1.95
286081--286257	40	4.3	42	89	4	272	36	23	17	22	1.94
286081--286257	82	2.2	82	93	0	300	36	23	17	22	1.94
286106--286282	21	8.6	21	72	9	141	35	25	18	20	1.95
286291--286383	21	4.5	21	75	5	100	21	20	25	32	1.98
294723--294759	3	12.3	3	100	0	74	64	0	0	35	0.94
307402--307465	21	2.9	22	77	15	60	48	1	1	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310745--310801	29	1.9	30	89	3	89	54	15	10	19	1.70
315932--316034	44	2.3	45	93	3	172	40	7	13	37	1.74
323465--323508	23	1.9	23	95	0	79	11	36	0	52	1.38
327419--327455	18	2.1	18	94	0	65	43	13	10	32	1.79
333045--333099	28	1.9	27	85	10	74	27	3	14	54	1.57
333704--333735	3	10.7	3	100	0	64	65	0	0	34	0.93
349772--349811	2	20.0	2	100	0	80	50	0	0	50	1.00
351519--351583	9	6.8	9	78	13	58	16	26	27	29	1.97
351519--351576	19	2.9	21	80	10	68	17	25	25	31	1.97
351540--351589	9	5.3	10	80	20	63	14	30	30	26	1.94
351540--351589	19	2.7	19	85	14	77	14	30	30	26	1.94
351585--351640	17	3.3	17	100	0	112	17	46	23	12	1.82
366555--366603	25	2.0	25	91	0	80	53	0	0	46	1.00
366601--366666	12	5.6	12	78	10	73	28	46	12	12	1.77
369422--369494	33	2.3	32	83	4	85	53	4	4	38	1.39
370912--370951	20	2.0	20	90	9	64	55	2	0	42	1.13
375073--375107	6	5.8	6	100	0	70	48	0	17	34	1.47
377400--377453	2	27.0	2	100	0	108	50	0	0	50	1.00
377913--377961	25	2.0	25	88	4	73	26	8	8	57	1.56
378348--378414	29	2.3	29	82	2	73	55	10	7	26	1.60
379035--379068	17	1.9	18	88	5	52	38	0	2	58	1.13
379015--379095	29	2.8	28	80	10	83	39	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380603--380641	19	2.0	21	85	10	55	33	7	2	56	1.41
388425--388474	17	3.0	17	85	2	66	32	2	6	60	1.32
409809--409875	27	2.5	27	80	4	82	64	1	7	26	1.29
411406--411438	15	2.2	15	89	10	50	78	0	0	21	0.75
411939--413034	106	10.4	106	94	0	1779	22	18	25	33	1.97
413252--413280	1	29.0	1	100	0	58	0	0	0	100	0.00
413810--413917	55	1.9	56	88	1	164	14	22	11	51	1.73
423303--423347	20	2.2	20	88	7	65	71	2	6	20	1.20
424332--424398	27	2.5	27	80	4	82	64	1	7	26	1.29
425933--425965	15	2.2	15	89	10	50	78	0	0	21	0.75
426615--426665	26	2.0	26	88	3	77	52	0	9	37	1.34
435158--435182	2	12.5	2	100	0	50	48	0	0	52	1.00
438564--438598	18	2.1	16	89	10	52	51	2	0	45	1.16
443836--443977	59	2.4	59	81	11	166	37	3	23	35	1.72
445579--445612	17	1.9	17	88	5	50	41	8	0	50	1.34
445708--445781	24	3.0	23	72	18	60	55	1	0	43	1.08
446087--446131	21	2.1	21	87	0	63	55	0	2	42	1.12
455426--455478	21	2.5	21	81	6	72	20	26	18	33	1.96
455468--455535	21	3.3	21	89	2	93	39	14	22	23	1.91
455526--455663	41	3.4	41	75	2	134	35	23	15	24	1.94
455571--455637	20	3.3	20	82	0	89	28	28	13	29	1.94
455830--455873	22	2.0	22	90	0	70	20	43	18	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456152--456194	20	2.2	20	86	0	59	11	18	18	51	1.76
456331--456385	25	2.2	24	78	15	58	20	9	18	52	1.71
457513--457560	18	2.7	18	93	0	87	27	45	12	14	1.81
458093--458138	20	2.3	20	85	7	58	39	26	19	15	1.91
458104--458159	20	2.8	20	81	2	69	41	21	21	16	1.90
458093--458195	19	5.6	19	75	14	72	42	23	20	13	1.87
458233--458287	20	2.8	20	91	2	85	16	27	23	32	1.96
458655--458743	42	2.1	42	85	0	115	23	41	13	21	1.88
460089--460127	14	2.8	14	84	0	51	35	0	17	46	1.49
460254--460307	14	3.5	14	73	22	54	48	18	20	12	1.81
460264--460300	19	1.9	19	88	0	56	51	13	21	13	1.75
460331--460426	20	4.8	20	75	7	97	17	20	20	40	1.91
460319--460406	40	2.4	36	83	12	108	15	20	21	42	1.89
460331--460426	40	2.4	41	81	8	117	17	20	20	40	1.91
460640--460731	20	4.6	20	73	2	76	20	18	21	39	1.93
461748--461784	12	3.1	12	100	0	74	72	0	27	0	0.84
464288--464365	21	3.8	21	93	5	124	19	19	16	44	1.86
464288--464525	41	5.8	41	70	15	159	26	19	18	36	1.94
464288--464402	20	5.6	21	84	8	123	20	20	17	41	1.90
464399--464454	20	2.7	21	80	5	69	42	16	21	19	1.89
464398--464464	21	3.2	21	78	4	73	38	16	22	22	1.92
464474--464525	20	2.5	20	81	3	59	21	23	15	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464515--464567	21	2.5	22	78	6	65	33	16	26	22	1.96
464854--464880	2	13.5	2	100	0	54	0	51	0	48	1.00
467853--467894	16	2.4	18	76	15	52	16	9	9	64	1.49
470604--470896	149	2.0	149	94	0	514	29	17	21	32	1.96
472478--472545	3	21.7	3	76	8	64	29	33	4	32	1.77
501034--501060	4	6.8	4	100	0	54	22	25	0	51	1.48
503007--503050	2	23.0	2	90	9	74	50	0	0	50	1.00
503222--503266	2	23.0	2	95	4	83	51	0	0	48	1.00
503523--503557	17	2.1	17	100	0	70	28	31	5	34	1.81
506824--506855	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9