genome.fa.s8511.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008511.1 Hibiscus syriacus cultivar Beakdansim tig00111366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2221980

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1077 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1687004--1687045	10	4.0	11	87	12	54	42	0	26	30	1.55
1687182--1687291	50	2.2	48	79	10	123	22	32	30	13	1.93
1687871--1687942	34	2.1	34	92	5	119	58	5	0	36	1.22
1688303--1688365	14	4.5	15	73	16	64	52	0	0	47	1.00
1688309--1688366	25	2.3	26	77	13	68	50	0	0	50	1.00
1690306--1690404	26	3.7	26	79	11	101	39	3	3	54	1.31
1691266--1691339	22	3.2	22	64	14	58	47	2	4	45	1.35
1691265--1691356	48	1.9	48	100	0	184	47	3	4	44	1.39
1693713--1693754	21	2.0	21	81	9	50	47	9	0	42	1.36
1700070--1700109	21	1.9	21	89	0	62	27	25	20	27	1.99
1709730--1709778	24	2.0	24	92	0	80	40	0	18	40	1.50
1710432--1710500	34	2.0	34	100	0	138	52	2	11	33	1.53
1714083--1714127	2	23.0	2	95	4	83	51	0	0	48	1.00
1714855--1714939	26	3.3	26	93	0	134	3	37	12	45	1.60
1717438--1717498	23	2.6	24	87	7	90	26	27	27	18	1.98
1717514--1717731	103	2.1	103	100	0	436	36	24	13	25	1.92
1719247--1719291	21	2.1	21	87	0	63	15	24	28	31	1.96
1721660--1721698	17	2.3	17	100	0	78	12	23	46	17	1.83
1721640--1721670	7	4.4	7	91	0	53	25	25	29	19	1.99
1721694--1721830	29	4.8	28	75	13	84	29	29	26	15	1.96
1721696--1721809	19	5.9	19	86	4	140	28	31	25	14	1.94
1721694--1721830	9	14.3	9	75	11	112	29	29	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1729112--1729164	5	9.8	5	76	15	52	7	22	50	18	1.72
1729105--1729165	17	3.3	17	79	20	77	11	22	47	18	1.80
1729112--1729164	22	2.4	22	100	0	106	7	22	50	18	1.72
1729163--1729279	19	6.1	19	81	6	110	29	27	25	17	1.97
1729212--1729279	10	6.9	10	82	11	70	33	23	25	17	1.96
1729161--1729278	29	4.1	29	77	10	109	29	27	27	16	1.97
1729161--1729278	9	12.3	9	78	10	92	29	27	27	16	1.97
1734965--1734998	15	2.3	15	94	0	59	35	0	0	64	0.94
1744607--1744647	20	2.0	20	100	0	82	36	14	9	39	1.79
1759797--1759841	23	2.0	23	81	0	54	28	26	24	20	1.99
1761667--1761711	21	2.1	21	87	0	63	15	24	28	31	1.96
1763230--1763385	31	5.0	31	96	1	269	37	23	19	19	1.94
1771707--1772229	261	2.0	261	100	0	1046	37	21	11	28	1.89
1773277--1773873	196	3.1	194	96	1	1113	39	14	14	31	1.85
1773954--1774011	29	2.0	29	96	3	109	53	17	6	22	1.67
1776116--1776147	6	5.3	6	100	0	64	34	0	18	46	1.49
1777404--1777461	28	2.1	28	93	0	98	37	8	5	48	1.56
1787553--1787649	46	2.1	48	96	3	180	44	24	14	16	1.85
1788837--1788887	23	2.2	23	86	13	70	68	3	1	25	1.17
1789118--1789166	20	2.5	20	96	0	89	32	12	44	10	1.75
1789903--1790016	42	2.6	42	84	8	131	25	16	23	34	1.95
1789778--1790349	167	3.4	169	92	5	963	24	17	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1791385--1791545	80	2.0	81	98	1	315	19	22	22	35	1.96
1798700--1798730	14	2.2	14	94	0	53	77	0	9	12	0.99
1799468--1799522	24	2.2	25	81	18	71	60	7	3	29	1.41
1799476--1799528	24	2.2	24	87	9	74	67	3	3	24	1.23
1799477--1799566	24	3.8	24	69	15	60	70	5	2	22	1.20
1799765--1799813	20	2.5	20	96	0	89	32	12	44	10	1.75
1804909--1804977	23	3.0	23	89	0	111	17	24	26	31	1.97
1808210--1808251	18	2.3	19	87	4	59	45	0	9	45	1.36
1817945--1818028	29	2.9	28	87	5	123	23	32	20	23	1.98
1817962--1818030	14	4.9	14	75	10	68	24	31	20	23	1.98
1821307--1821341	18	1.9	18	100	0	70	17	40	25	17	1.90
1830188--1830241	20	2.7	20	75	11	65	27	29	14	27	1.95
1830281--1830340	20	3.0	19	88	9	84	40	25	18	16	1.91
1830468--1830537	22	3.2	22	95	0	122	22	42	12	21	1.87
1830820--1830861	20	2.1	20	86	0	57	14	19	21	45	1.85
1833592--1833747	31	5.0	31	96	1	269	37	23	19	19	1.94
1835325--1835356	3	10.7	3	100	0	64	31	0	0	68	0.90
1838141--1838296	31	5.0	31	94	1	260	37	22	19	20	1.94
1840130--1840247	47	2.4	48	81	13	125	33	0	16	49	1.52
1840311--1840349	20	2.0	20	89	0	60	43	23	12	20	1.86
1840636--1840718	39	2.1	39	95	0	148	16	15	21	45	1.85
1842113--1842166	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843176--1843228	20	2.7	20	77	11	72	24	15	32	28	1.95
1844022--1844103	31	2.6	31	94	0	137	40	25	18	15	1.90
1845437--1845472	12	3.0	12	91	0	54	58	0	33	8	1.28
1851827--1853015	105	11.4	105	93	2	1993	22	17	25	33	1.96
1853771--1853867	50	1.9	51	87	2	142	15	21	13	49	1.79
1863255--1863288	10	3.4	10	87	0	50	73	0	5	20	1.04
1868499--1868551	22	2.4	23	90	6	83	41	20	5	32	1.76
1871394--1871494	50	2.0	49	86	5	141	39	11	14	33	1.83
1873654--1873691	16	2.2	18	86	9	53	26	0	2	71	1.00
1874506--1874547	15	2.8	16	78	10	52	40	21	11	26	1.88
1877626--1877668	22	2.0	22	90	4	70	39	18	9	32	1.83
1877628--1877676	22	2.2	22	85	7	64	42	16	8	32	1.77
1881367--1881416	22	2.3	22	100	0	100	42	20	6	32	1.76
1883895--1884063	57	3.0	57	92	0	275	32	30	21	15	1.95
1888664--1888893	57	4.0	57	91	0	361	32	30	20	16	1.95
1892533--1892563	16	1.9	16	93	0	53	48	19	12	19	1.81
1895571--1895621	22	2.3	23	90	6	79	39	19	7	33	1.81
1897385--1897429	20	2.3	19	81	11	54	57	4	17	20	1.56
1906416--1906447	13	2.6	13	90	9	50	37	3	0	59	1.13
1906778--1906814	19	1.9	19	89	10	58	56	0	2	40	1.13
1907152--1907198	21	2.2	21	100	0	94	25	19	19	36	1.95
1917244--1917283	19	2.2	18	86	4	53	17	7	32	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1921554--1921587	6	5.7	6	100	0	68	35	50	0	14	1.44
1925163--1925216	24	2.2	24	83	6	65	22	14	37	25	1.93
1926522--1926563	22	1.9	22	85	0	57	50	0	0	50	1.00
1926547--1926590	21	2.2	20	84	12	54	61	2	2	34	1.21
1928072--1928114	14	2.9	14	89	6	59	16	16	16	51	1.77
1928103--1928127	10	2.5	10	100	0	50	20	12	12	56	1.67
1928391--1928481	23	3.9	23	77	8	94	12	8	17	61	1.55
1928373--1928441	32	2.2	32	81	5	77	10	4	18	66	1.38
1928398--1928470	37	2.0	36	84	7	94	12	6	17	63	1.50
1928451--1928490	20	2.0	20	90	0	62	10	15	20	55	1.68
1932333--1932357	13	1.9	13	100	0	50	64	8	16	12	1.49
1932981--1933026	22	2.1	22	83	0	56	36	2	0	60	1.09
1933725--1933804	38	2.1	38	97	0	151	42	17	7	32	1.77
1935286--1935343	22	2.8	20	80	10	71	29	15	25	29	1.96
1935219--1935398	95	1.9	96	86	5	258	33	17	21	27	1.96
1935228--1935434	95	2.2	96	81	6	224	32	15	24	27	1.96
1936252--1936399	64	2.3	65	85	5	192	33	20	16	28	1.95
1936883--1936918	17	2.0	19	89	10	58	44	5	11	38	1.63
1937052--1937159	31	3.5	31	74	3	85	25	17	21	35	1.95
1938849--1938890	20	2.3	19	84	12	52	28	19	21	30	1.97
1941097--1941134	12	3.2	12	85	10	51	44	5	10	39	1.61
1941616--1941677	23	2.7	23	100	0	124	40	14	16	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1947832--1947865	8	4.2	8	88	0	50	14	20	0	64	1.28
1951011--1951059	18	2.7	18	87	9	73	28	32	18	20	1.96
1953842--1953882	20	2.0	20	100	0	82	56	14	19	9	1.66
1956395--1956436	19	2.2	19	95	0	75	33	26	19	21	1.97
1960436--1960477	20	2.3	19	88	12	61	26	19	23	30	1.98
1962181--1962242	30	2.1	29	87	3	88	48	3	12	35	1.58
1965030--1965068	17	2.3	17	100	0	78	17	46	23	12	1.83
1972308--1972356	19	2.6	18	78	9	53	14	24	28	32	1.94
1972354--1972399	14	3.1	14	80	17	56	19	52	21	6	1.69
1972368--1972401	17	2.0	17	100	0	68	17	47	23	11	1.81

Tables:   1   2   3   4   5   6   7   8   9