genome.fa.s8511.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008511.1 Hibiscus syriacus cultivar Beakdansim tig00111366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2221980

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1077 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507613--507641	2	14.5	2	100	0	58	51	0	0	48	1.00
507641--507671	2	15.5	2	100	0	62	51	0	48	0	1.00
513557--513631	26	2.7	28	79	10	73	38	2	1	57	1.21
515760--515788	14	2.0	15	93	6	51	62	0	6	31	1.22
517170--517219	24	2.1	24	85	7	66	60	16	2	22	1.46
520479--520522	20	2.2	20	84	4	63	68	0	18	13	1.22
524996--525052	20	2.8	20	82	12	64	71	3	8	15	1.24
534696--534745	24	2.1	24	85	7	66	60	16	2	22	1.46
544592--544632	21	2.0	21	85	0	55	46	4	21	26	1.72
557139--557181	20	2.0	22	86	8	63	46	0	0	53	1.00
557139--557182	21	2.0	22	83	12	56	47	0	0	52	1.00
561926--561973	18	2.6	19	83	6	55	45	22	29	2	1.64
561941--561986	18	2.5	18	89	3	65	45	23	30	0	1.53
564346--564374	6	4.8	6	100	0	58	65	17	0	17	1.27
566259--566313	21	2.6	21	85	0	74	25	23	27	23	2.00
566748--566804	21	2.8	21	94	2	98	35	35	17	12	1.87
568804--568871	22	3.1	22	80	2	84	22	14	41	22	1.90
569030--569075	20	2.3	20	96	0	83	15	13	26	45	1.82
569630--569863	20	11.6	20	78	7	213	37	25	19	18	1.94
569630--569861	81	2.9	80	82	5	263	37	25	18	18	1.94
570391--570456	19	3.5	19	91	0	114	15	21	18	45	1.85
570391--570474	38	2.4	33	82	13	89	15	21	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570453--570487	14	2.5	14	95	0	61	11	25	20	42	1.85
570472--570534	20	3.2	20	82	8	83	12	20	17	49	1.79
574105--574203	19	5.7	18	71	24	63	46	22	19	12	1.82
574105--574198	33	2.8	32	90	3	134	45	22	19	12	1.83
574137--574213	19	4.3	19	80	15	92	45	24	15	14	1.83
574209--574295	19	4.7	19	72	13	83	13	20	20	44	1.85
574211--574328	34	3.3	35	81	8	123	14	22	22	41	1.89
576845--576898	24	2.2	24	93	0	90	40	20	18	20	1.91
577751--578010	20	12.9	19	74	11	146	21	19	23	36	1.95
577757--577968	40	5.3	40	89	4	286	19	19	23	37	1.94
577739--578028	60	4.8	59	72	13	196	20	18	23	36	1.95
578084--578131	20	2.4	20	86	6	62	18	14	31	35	1.91
578623--578771	76	1.9	77	93	4	257	34	19	16	30	1.93
583878--583910	16	2.1	16	88	11	50	18	9	0	72	1.10
584081--584116	18	2.0	18	89	10	56	38	0	0	61	0.96
584081--584115	17	2.0	18	88	5	54	40	0	0	60	0.97
585218--585263	16	2.9	16	78	15	60	52	0	0	47	1.00
586571--586630	27	2.2	27	85	8	77	31	21	23	23	1.98
586747--586771	6	4.2	6	100	0	50	36	48	16	0	1.46
587279--587314	6	6.0	6	100	0	72	0	16	50	33	1.46
587399--587468	21	3.3	21	82	7	97	22	24	24	28	1.99
587457--587524	20	3.6	20	80	15	99	25	20	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587453--587525	36	2.0	36	97	0	137	27	20	16	35	1.94
587512--587562	21	2.4	21	93	0	84	17	21	29	31	1.96
597734--597775	8	5.1	8	82	11	50	11	33	28	26	1.92
597734--597766	15	2.2	15	94	0	57	12	33	27	27	1.92
599075--599110	18	2.0	18	88	0	54	52	0	16	30	1.44
600211--600326	24	4.8	24	89	4	171	27	13	18	39	1.89
606550--606723	60	2.9	59	79	8	183	31	20	6	41	1.77
606863--606978	60	1.9	60	82	0	142	45	4	17	32	1.68
607854--607900	19	2.5	19	92	0	76	14	23	31	29	1.95
616533--616597	17	3.8	17	82	9	78	30	9	32	27	1.88
618768--618851	37	2.3	37	85	6	118	42	20	2	34	1.65
622914--622947	16	2.1	16	94	0	59	32	26	8	32	1.87
623342--623425	37	2.3	37	85	6	118	42	20	2	34	1.65
624053--624087	5	6.6	5	87	12	52	57	0	2	40	1.14
624053--624087	11	3.3	10	88	11	52	57	0	2	40	1.14
627421--627487	30	2.2	30	86	0	89	19	17	28	34	1.95
632321--632384	30	2.1	30	85	0	83	18	18	28	34	1.95
638986--639040	23	2.4	24	79	14	62	34	21	5	38	1.77
641050--641079	2	15.0	2	92	0	51	53	0	0	46	1.00
651351--651384	18	1.9	18	88	5	52	50	0	20	29	1.49
657157--657498	172	2.0	169	98	1	657	24	26	19	29	1.98
659827--659905	34	2.3	36	80	8	92	32	3	8	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659985--660059	25	3.0	25	72	16	66	33	1	5	60	1.28
660991--661177	100	1.9	100	84	10	258	22	10	5	60	1.49
661184--661221	13	3.2	12	85	10	51	13	5	0	81	0.85
661186--661244	29	2.0	31	86	6	86	15	8	1	74	1.13
662615--662688	22	3.3	22	72	12	62	45	1	1	51	1.18
663662--663706	23	2.0	23	90	0	72	24	26	26	22	2.00
665200--665244	21	2.1	21	87	0	63	31	28	24	15	1.96
665270--665314	22	2.0	22	86	4	63	31	33	26	8	1.87
665574--665620	24	2.0	24	87	4	69	38	6	14	40	1.72
666551--666666	30	3.9	30	95	1	198	20	22	25	31	1.98
667250--667365	30	3.9	30	94	1	198	20	22	25	31	1.98
666232--667632	699	2.0	698	99	0	2775	33	11	23	31	1.91
667638--667689	2	26.0	2	88	0	77	44	0	5	50	1.26
670792--670836	21	2.1	21	87	0	63	31	28	24	15	1.96
671167--671214	24	2.0	24	84	8	62	37	6	14	41	1.71
672158--672271	30	3.9	30	95	3	198	21	22	24	31	1.98
672542--672579	2	19.0	2	94	0	67	47	0	2	50	1.15
673123--673182	2	30.0	2	100	0	120	50	0	0	50	1.00
673421--673455	18	1.9	18	88	11	54	22	17	5	54	1.64
674040--674083	21	2.1	21	91	0	70	18	25	25	31	1.97
674887--674966	28	2.8	29	76	3	99	31	17	37	13	1.89
676238--676315	31	2.5	31	89	4	113	34	12	28	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676762--676828	31	2.2	31	88	0	98	35	14	26	22	1.93
679272--679345	24	3.0	24	80	7	69	16	10	14	58	1.64
679299--679332	10	3.4	10	87	0	50	17	11	11	58	1.62
679512--679556	23	2.0	23	86	0	63	13	2	17	66	1.34
679651--679683	16	2.1	16	100	0	66	6	12	24	57	1.57
680566--680735	45	3.8	45	90	2	252	11	11	40	37	1.78
680566--680734	44	3.8	44	91	3	248	11	11	39	37	1.78
680566--680735	89	1.9	90	87	2	252	11	11	40	37	1.78
683701--683790	5	18.8	5	73	18	59	35	2	4	57	1.31
683724--683772	18	2.7	17	84	12	62	38	2	2	57	1.22
683701--683783	43	1.9	43	85	9	116	36	2	4	56	1.34
684491--684539	24	2.0	25	84	11	66	0	14	12	73	1.10
687381--687449	31	2.2	31	84	5	86	37	14	23	24	1.92
689155--689190	7	5.1	7	93	0	63	52	0	0	47	1.00
689136--689195	21	2.9	21	78	7	61	46	0	0	53	1.00
689671--689974	117	2.6	117	93	3	501	31	28	19	21	1.97
689939--690013	37	2.0	37	97	0	141	30	28	13	28	1.94
689822--690126	153	2.0	152	87	4	434	30	27	18	23	1.97
697546--697604	21	2.8	21	89	5	84	50	8	0	40	1.33
698944--699170	118	2.0	112	84	8	296	34	13	12	39	1.82
699748--699787	16	2.5	16	95	0	71	22	22	17	37	1.94
700520--700663	60	2.4	60	78	11	150	33	20	13	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704461--704542	28	2.9	29	81	5	105	29	15	39	15	1.89
720675--720705	3	10.3	3	100	0	62	67	32	0	0	0.91
720705--720794	3	30.7	3	94	4	130	67	4	0	27	1.09
722966--723000	17	2.1	17	100	0	70	42	5	17	34	1.73
723770--723805	19	1.9	19	88	5	56	36	2	11	50	1.53
723932--724033	51	2.0	51	100	0	204	33	17	21	27	1.96
724445--724478	3	11.3	3	100	0	68	67	0	32	0	0.91
726188--726236	3	16.3	3	86	0	71	26	0	6	67	1.14
726190--726239	12	4.2	12	89	0	82	24	0	8	68	1.16
729179--729332	75	2.0	76	89	1	238	34	10	15	39	1.82

Tables:   1   2   3   4   5   6   7   8   9