genome.fa.s8569.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008569.1 Hibiscus syriacus cultivar Beakdansim tig00111493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1513883

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272612--272670	27	2.1	29	87	6	86	47	8	0	44	1.33
273883--273932	6	8.3	6	95	0	91	16	52	0	32	1.44
285810--285834	13	1.9	13	100	0	50	44	16	0	40	1.47
285919--285970	19	2.7	19	87	3	77	61	21	0	17	1.34
287397--287434	12	3.0	13	84	7	51	44	10	10	34	1.73
287459--287500	19	2.2	19	86	4	57	66	11	0	21	1.23
301059--301130	21	3.5	21	86	7	103	26	19	8	45	1.78
303202--303279	41	1.9	41	94	0	138	30	15	8	44	1.77
309046--309118	38	1.9	38	89	8	114	13	12	34	39	1.82
308863--309767	248	3.7	248	86	6	1302	24	11	26	36	1.90
309294--309381	38	2.3	38	90	5	135	12	10	38	38	1.77
309750--309832	36	2.4	34	86	7	116	14	10	37	37	1.81
309758--309829	36	2.0	37	94	2	128	13	11	37	37	1.81
308824--310075	491	2.6	482	84	9	1439	23	11	27	37	1.89
309531--309937	215	1.9	219	89	4	635	25	10	27	36	1.89
309993--310081	38	2.4	38	88	7	137	12	8	40	38	1.74
312067--312127	28	2.2	28	91	2	97	44	34	8	13	1.73
313569--313609	21	2.0	21	90	0	64	39	0	2	58	1.11
314161--314223	21	2.8	24	74	18	62	39	3	0	57	1.15
314157--314231	24	3.2	23	70	24	59	37	5	0	57	1.22
321671--321771	31	3.2	32	78	9	109	33	17	16	31	1.93
326999--327062	20	3.0	20	71	10	56	31	14	4	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327098--327137	21	1.9	21	85	10	55	32	5	5	57	1.42
332346--332409	23	2.8	22	74	6	65	34	25	25	15	1.95
332800--332877	2	39.0	2	100	0	156	50	0	0	50	1.00
332937--332973	2	18.5	2	100	0	74	48	0	0	51	1.00
337223--337482	41	6.4	42	71	6	140	33	20	17	28	1.95
337204--337482	61	4.6	60	68	12	181	33	20	17	28	1.96
337245--337296	21	2.5	21	81	3	61	40	17	21	21	1.91
337306--337378	21	3.5	21	78	10	78	24	20	16	38	1.93
337368--337479	20	5.6	20	81	4	127	38	20	19	21	1.94
338033--338093	14	4.0	14	73	19	50	44	22	22	9	1.82
338006--338074	19	3.8	19	66	26	60	44	21	21	11	1.84
338012--338104	33	2.8	32	87	8	123	44	24	20	10	1.83
338100--338245	19	8.1	19	74	17	132	12	23	20	43	1.85
338100--338237	52	2.6	52	88	2	204	12	23	21	42	1.86
340345--340414	21	3.3	21	64	7	52	22	34	18	24	1.96
342305--342341	12	3.1	12	100	0	74	0	27	0	72	0.84
342516--342575	24	2.5	24	78	10	77	38	20	16	25	1.93
343316--343423	20	5.4	20	93	0	162	26	19	28	25	1.99
343311--343457	20	7.3	20	86	4	161	24	19	26	29	1.98
343536--343621	40	2.2	40	89	0	127	26	27	19	25	1.99
343516--343612	20	4.8	20	96	0	158	23	28	19	27	1.98
343835--343910	20	3.8	20	92	0	116	39	21	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343910--343955	19	2.4	19	88	0	65	17	23	19	39	1.92
345548--345639	42	2.2	42	86	1	132	20	14	42	22	1.88
345575--345635	21	2.9	21	73	9	70	21	11	42	24	1.86
345977--346037	20	3.0	20	85	0	68	34	22	16	26	1.95
346003--346078	20	3.8	20	87	1	100	35	21	25	18	1.95
346078--346136	14	3.9	14	72	20	55	49	22	16	11	1.78
346062--346141	33	2.4	33	95	0	142	47	21	18	12	1.81
346148--346250	19	5.6	19	77	12	99	16	22	18	42	1.89
346215--346252	20	1.9	19	94	5	67	21	26	21	31	1.98
348150--348192	20	2.2	20	86	0	59	51	18	18	11	1.76
348471--348514	22	2.0	22	90	0	70	22	13	43	20	1.87
348681--348818	41	3.4	41	83	2	188	22	17	24	35	1.95
348701--348814	20	5.7	20	81	6	131	22	18	26	32	1.97
348708--348835	41	3.2	40	85	3	159	23	18	25	32	1.97
348845--348897	21	2.5	22	75	6	65	33	16	26	22	1.96
361406--361498	39	2.4	39	81	3	98	24	24	19	31	1.98
367130--367182	21	2.5	21	87	6	72	22	24	16	35	1.95
367172--367244	20	3.7	20	96	0	128	39	21	19	19	1.92
367441--367506	22	3.0	22	86	0	96	24	37	15	22	1.92
367842--367932	20	4.6	20	84	1	94	14	16	23	46	1.83
367900--367939	20	2.0	20	90	0	62	12	12	22	52	1.72
369813--369858	20	2.3	20	88	0	74	39	21	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369813--369864	20	2.6	20	84	0	59	40	21	17	21	1.91
369836--369929	33	2.8	34	78	3	109	45	22	18	13	1.84
369836--369938	34	3.1	34	76	8	88	46	21	17	14	1.83
369903--369951	20	2.5	20	89	0	71	38	22	20	18	1.93
370016--370082	20	3.3	20	89	0	98	23	17	22	35	1.95
372056--372091	14	2.6	14	90	0	54	30	0	22	47	1.52
372193--372244	19	2.7	19	84	3	68	38	23	23	15	1.92
372197--372283	20	4.7	19	74	17	76	43	20	22	12	1.86
372293--372388	33	2.8	33	84	3	111	13	21	18	45	1.84
372360--372448	20	4.4	20	91	2	144	16	22	25	34	1.95
375767--375853	20	4.3	20	85	0	111	20	18	29	31	1.96
375840--375912	20	3.7	20	96	0	128	20	20	21	36	1.95
375902--375997	40	2.4	40	78	15	99	30	18	26	25	1.98
380795--380843	2	25.0	2	91	4	82	46	0	0	53	1.00
382041--382095	2	27.5	2	100	0	110	50	0	0	49	1.00
382305--382393	45	2.0	45	97	0	169	33	12	2	51	1.52
390603--390706	44	2.4	44	90	0	154	30	20	18	30	1.96
390629--390702	23	3.3	22	70	14	62	28	21	18	31	1.97
392627--392678	27	1.9	27	84	0	68	26	1	25	46	1.63
393325--393480	65	2.4	64	82	5	181	27	21	18	32	1.97
397238--397283	21	2.1	22	84	4	58	34	4	15	45	1.66
398347--398397	25	2.0	25	100	0	102	27	7	29	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408653--408998	2	178.5	2	62	22	53	48	2	4	44	1.36
408654--408717	18	3.6	17	78	14	67	51	3	0	45	1.17
408650--408687	17	2.2	17	86	9	51	57	0	0	42	0.98
408696--408878	13	14.3	13	66	18	55	45	4	4	44	1.45
408656--408717	17	3.6	17	80	6	63	51	3	0	45	1.17
408834--408878	15	3.1	15	84	6	58	48	6	4	40	1.49
408868--408998	69	1.9	69	87	3	190	50	1	3	44	1.29
409361--409419	14	4.2	14	78	8	66	20	0	30	49	1.49
409649--409706	17	3.1	19	85	7	66	25	29	0	44	1.54
410264--410292	2	14.5	2	100	0	58	48	0	0	51	1.00
410405--410445	20	2.1	20	95	4	75	46	0	24	29	1.53
410403--410446	19	2.3	18	88	11	70	43	0	27	29	1.55
410366--410455	46	2.0	46	80	8	103	46	0	23	30	1.52
410920--410966	14	3.7	14	71	26	50	51	4	0	44	1.21
410918--410967	23	2.1	24	96	3	93	48	4	0	48	1.20
411201--411299	16	6.2	16	84	0	117	40	11	27	21	1.87
411328--411475	64	2.3	63	77	11	140	20	19	27	32	1.97
423404--423550	64	2.3	65	85	7	192	33	21	17	28	1.95
424202--424309	31	3.5	31	79	3	103	24	18	22	35	1.96
424224--424330	31	3.5	30	79	6	90	24	18	24	32	1.97
428924--428961	20	1.9	20	84	10	51	10	42	13	34	1.78
431246--431300	24	2.3	24	100	0	110	23	29	30	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438129--438158	15	2.0	15	93	0	51	43	0	0	56	0.99
438092--438156	33	2.0	33	84	6	87	53	0	0	46	1.00
441279--441319	17	2.3	18	87	4	57	36	26	12	24	1.91
441279--441325	18	2.7	17	78	15	51	36	27	12	23	1.91
441684--441729	23	2.0	24	83	12	60	63	4	2	30	1.26
442293--442397	49	2.1	49	85	5	138	37	13	12	37	1.82
452146--452196	23	2.3	23	86	6	79	17	41	21	19	1.91
452178--452217	21	1.9	21	89	0	62	25	40	25	10	1.86
455846--455895	24	2.1	24	85	7	66	28	2	12	58	1.45
460697--460726	13	2.2	14	94	5	53	40	13	26	20	1.89

Tables:   1   2   3   4   5   6   7   8