genome.fa.s8569.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008569.1 Hibiscus syriacus cultivar Beakdansim tig00111493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1513883

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604878--604902	11	2.3	11	100	0	50	28	0	40	32	1.57
609596--609699	37	2.8	37	83	2	120	39	11	14	34	1.82
610150--610202	2	26.5	2	100	0	106	49	0	0	50	1.00
610481--610538	25	2.3	25	82	11	66	25	0	1	72	0.94
610501--610561	22	2.9	21	81	18	65	22	1	1	73	1.01
610503--610558	17	3.4	15	79	20	51	23	1	1	73	1.03
614931--614997	15	4.7	14	78	15	75	77	5	16	0	0.95
614944--615009	23	2.8	23	76	17	64	80	6	12	1	0.96
616620--617776	106	10.9	106	91	0	1821	33	24	18	22	1.97
618527--618630	37	2.8	37	86	0	145	41	13	13	31	1.83
619102--619148	24	1.9	25	82	4	60	25	6	0	68	1.13
624012--624081	34	2.1	32	84	5	86	22	25	17	34	1.96
624430--624486	19	2.9	19	92	2	87	15	28	38	17	1.91
624455--624497	19	2.3	19	84	4	52	20	27	25	25	1.99
625892--625939	19	2.5	20	82	3	62	29	12	6	52	1.63
626797--626866	34	2.1	34	89	5	108	22	28	15	32	1.95
627215--627317	20	5.1	20	79	14	113	17	27	35	19	1.94
627229--627318	41	2.2	40	88	7	128	16	28	34	20	1.94
631230--631346	54	2.2	54	84	3	146	44	13	3	38	1.61
632348--632422	35	2.1	35	92	0	123	33	29	28	9	1.88
632501--632575	24	3.2	23	84	5	105	36	21	17	25	1.95
632505--632590	23	3.7	23	84	3	109	38	19	17	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632484--632597	47	2.4	47	80	2	131	40	20	14	24	1.90
635066--635097	7	4.4	7	92	7	55	25	28	34	12	1.92
635047--635131	8	10.5	8	75	21	72	21	25	37	15	1.92
635057--635113	15	3.8	15	88	9	73	21	28	36	14	1.92
635074--635149	13	5.3	13	76	17	62	19	22	42	15	1.89
635098--635132	18	1.9	18	100	0	70	14	22	45	17	1.84
635074--635167	31	3.1	31	86	4	122	19	21	43	15	1.88
635126--635171	18	2.6	18	96	0	83	15	17	50	17	1.79
637197--637271	35	2.1	35	92	0	123	33	29	28	9	1.88
637352--637441	23	3.8	24	83	4	121	37	20	16	25	1.93
637335--637448	47	2.4	47	82	2	140	40	20	14	25	1.89
639915--639946	7	4.4	7	92	7	55	25	28	34	12	1.92
639896--639980	8	10.5	8	75	21	72	21	25	37	15	1.92
639906--639962	15	3.8	15	88	9	73	21	28	36	14	1.92
639923--639998	13	5.3	13	76	17	62	19	22	42	15	1.89
639947--639981	18	1.9	18	100	0	70	14	22	45	17	1.84
639923--640016	31	3.1	31	86	4	122	19	21	43	15	1.88
639975--640020	18	2.6	18	96	0	83	15	17	50	17	1.79
643721--643881	51	3.2	50	76	6	155	27	14	10	47	1.77
643728--643848	48	2.4	50	82	6	156	27	16	9	46	1.79
645846--645888	22	2.0	22	86	9	61	62	11	9	16	1.53
653363--653406	2	22.5	2	95	4	81	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653901--653926	10	2.6	10	100	0	52	42	7	0	50	1.31
658085--658385	150	2.0	149	97	0	566	29	20	20	28	1.98
658353--658449	34	2.7	36	80	12	110	23	24	22	28	1.99
662628--662661	18	1.9	17	94	5	59	35	23	23	17	1.95
666003--666117	7	15.3	7	74	16	54	58	1	0	39	1.14
666013--666194	26	6.7	26	70	22	108	54	3	1	40	1.26
666012--666199	12	14.8	12	70	18	107	54	3	1	40	1.28
666006--666194	14	14.0	14	71	21	129	55	3	1	40	1.25
666065--666199	31	4.3	31	77	8	112	52	4	1	41	1.30
666931--666974	22	2.0	22	100	0	88	27	13	27	31	1.94
669953--669996	22	2.0	22	90	0	70	27	13	25	34	1.93
679980--680019	16	2.5	16	100	0	80	37	20	12	30	1.89
680647--680754	31	3.5	31	81	6	119	12	27	31	28	1.92
685378--685678	150	2.0	149	97	0	566	29	20	20	28	1.98
685646--685742	34	2.7	36	80	12	110	23	24	22	28	1.99
689934--689967	18	1.9	17	94	5	59	35	23	23	17	1.95
692595--692706	7	15.3	7	73	15	50	58	1	0	39	1.15
692598--692706	14	7.6	14	74	17	75	57	1	0	39	1.15
692597--692766	33	4.9	35	73	16	122	54	3	1	40	1.25
692623--692765	14	10.7	14	76	12	99	52	4	1	41	1.29
692605--692780	78	2.2	80	82	9	202	53	3	1	40	1.27
692642--692785	45	3.2	43	80	12	157	52	4	1	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693517--693560	22	2.0	22	100	0	88	27	13	27	31	1.94
696537--696580	22	2.0	22	90	0	70	27	13	25	34	1.93
706563--706602	16	2.5	16	100	0	80	37	20	12	30	1.89
707230--707337	31	3.5	31	81	6	119	12	27	31	28	1.92
720287--720398	37	3.1	36	72	18	101	57	2	0	39	1.19
720283--720484	5	40.2	5	69	23	106	55	3	0	39	1.25
720280--720484	12	17.5	12	67	20	73	55	3	0	39	1.25
720280--720477	41	5.1	39	73	20	141	55	3	1	39	1.24
721208--721251	22	2.0	22	95	0	79	27	11	27	34	1.91
721865--721912	22	2.2	21	88	3	69	31	12	22	33	1.91
720757--722075	657	2.0	658	98	0	2559	33	15	16	35	1.90
723118--723148	15	2.1	15	93	0	53	51	9	25	12	1.70
729040--729152	51	2.2	51	98	0	217	24	22	7	45	1.79
729588--729724	64	2.2	63	80	6	143	24	23	18	34	1.96
733681--733793	51	2.2	51	98	0	217	22	22	9	46	1.81
735094--735159	23	2.9	23	81	0	87	19	21	25	33	1.97
743662--743734	30	2.4	30	76	0	92	17	36	15	30	1.91
749411--749442	14	2.3	14	100	0	64	53	6	6	34	1.51
760688--760735	18	2.7	18	93	3	80	33	8	31	27	1.86
761264--761320	28	2.0	28	93	0	96	47	28	7	17	1.73
762907--762946	2	20.0	2	100	0	80	50	0	0	50	1.00
763408--763493	35	2.5	35	84	0	100	40	20	1	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763462--763504	21	2.0	21	100	0	86	46	13	0	39	1.44
763627--763660	16	2.0	18	88	11	54	26	2	5	64	1.30
764128--764375	130	1.9	130	94	0	433	36	12	14	35	1.85
765953--765995	16	2.7	16	83	16	54	27	0	65	6	1.18
771960--772033	23	3.2	22	76	5	67	58	10	16	14	1.64
774293--774360	3	22.0	3	87	3	91	39	0	0	60	0.97
776004--776057	25	2.2	25	89	0	81	48	0	0	51	1.00
779889--779920	15	2.1	15	94	0	55	25	18	9	46	1.79
787242--787303	12	5.9	10	82	14	72	82	0	17	0	0.67
787245--787310	13	4.8	12	72	24	51	81	0	18	0	0.68
788688--789068	92	4.1	92	98	0	726	28	14	22	34	1.94
789917--789961	24	1.9	23	82	13	56	48	6	26	17	1.72
789868--790667	228	3.5	229	88	4	1068	39	14	18	28	1.89
789868--790667	113	7.0	113	83	5	932	39	14	18	28	1.89
790464--790749	124	2.4	122	85	8	372	41	16	17	24	1.90
790891--790957	3	22.0	3	84	6	82	40	0	0	59	0.97
792605--792657	24	2.2	25	86	3	72	47	0	0	52	1.00
796428--796464	17	2.1	17	90	5	56	51	0	0	48	1.00
797423--797499	31	2.5	31	97	0	145	45	9	11	33	1.72
799211--799378	83	2.0	83	97	0	318	41	13	7	38	1.72
800090--800175	38	2.3	37	80	7	111	47	0	0	52	1.00
800188--800220	12	2.5	13	85	14	50	12	15	48	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800413--800502	46	1.9	47	86	6	130	68	2	7	21	1.25
800674--800710	18	2.1	18	94	0	65	40	24	21	13	1.89
801919--802053	22	6.1	22	96	0	243	37	25	12	24	1.91
802363--802482	31	3.9	30	81	4	132	32	21	17	28	1.96
802363--802480	62	1.9	61	82	5	148	32	21	17	28	1.96
802895--802961	2	33.5	2	100	0	134	49	0	0	50	1.00
805808--805832	6	4.2	6	100	0	50	64	0	0	36	0.94
808475--808532	28	2.0	28	83	9	73	31	5	0	63	1.16
808555--808620	33	2.0	33	88	11	100	39	0	0	60	0.97
808486--808603	27	4.2	28	76	14	102	37	3	0	58	1.21

Tables:   1   2   3   4   5   6   7   8