genome.fa.s8569.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008569.1 Hibiscus syriacus cultivar Beakdansim tig00111493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1513883

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465932--465969	19	2.0	19	100	0	76	21	15	26	36	1.93
468482--468577	47	2.0	47	97	0	183	9	8	21	60	1.54
470945--470987	19	2.3	19	91	0	68	25	46	18	9	1.79
473982--474101	47	2.6	47	91	1	188	30	15	22	31	1.95
480866--481080	36	6.0	36	72	17	146	35	20	20	22	1.96
481322--481423	42	2.5	41	81	1	123	24	23	22	29	1.99
481198--481844	215	3.1	205	89	5	999	31	16	20	31	1.94
481537--481638	42	2.5	41	81	1	123	24	23	22	29	1.99
481747--481926	42	4.3	42	84	2	220	23	21	21	33	1.97
482040--482148	42	2.6	40	78	8	119	26	22	21	30	1.98
481831--482364	215	2.5	216	91	1	840	31	17	19	31	1.95
482262--482400	42	3.3	42	86	3	165	23	21	22	33	1.98
483044--483086	19	2.3	19	91	0	68	23	44	20	11	1.84
490758--490786	12	2.5	12	94	5	51	62	6	0	31	1.22
490647--490838	75	2.6	75	78	3	190	53	15	3	28	1.57
490818--490850	17	1.9	17	93	0	57	57	9	3	30	1.45
493074--493109	18	2.0	18	94	0	63	36	27	13	22	1.92
497765--497847	32	2.6	31	77	7	85	46	27	12	13	1.78
500678--500732	23	2.4	23	78	3	58	76	3	3	16	1.07
501626--501663	6	6.3	6	96	0	58	55	0	10	34	1.34
502414--502448	18	1.9	18	94	0	61	28	37	17	17	1.92
504822--504864	20	2.2	20	91	8	70	18	37	27	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508192--508273	34	2.4	35	87	6	114	21	34	21	21	1.97
511702--511761	20	3.0	20	87	4	86	20	33	30	16	1.94
511754--511809	15	3.5	15	71	21	51	19	35	25	19	1.95
511727--511810	33	2.5	35	94	3	145	20	33	27	19	1.96
511924--511965	21	2.0	21	95	0	75	23	21	28	26	1.99
513190--513224	18	1.9	19	88	11	56	28	17	5	48	1.69
513899--513951	18	2.9	18	88	0	79	30	30	18	20	1.97
515231--515568	152	2.2	151	83	4	364	39	8	18	33	1.82
515857--515935	36	2.2	35	88	2	113	46	17	2	32	1.62
521831--521896	21	3.1	21	93	0	105	46	7	12	33	1.69
522430--522584	29	5.3	29	100	0	310	17	34	30	17	1.93
523192--523235	21	2.1	21	91	0	70	29	0	15	54	1.42
523212--523265	28	1.9	28	96	0	99	29	0	12	57	1.36
526104--526143	21	2.0	20	85	5	53	17	12	22	47	1.81
526780--526882	21	4.6	21	69	22	66	39	0	8	50	1.40
526755--526871	49	2.4	50	91	5	188	41	0	11	47	1.39
526999--527040	17	2.5	17	88	0	66	40	0	0	59	0.97
527012--527069	21	2.7	22	77	15	59	37	3	5	53	1.40
527058--527284	12	18.3	13	70	17	103	45	2	8	44	1.46
526988--527225	97	2.4	99	82	10	271	42	2	7	47	1.44
527078--527282	26	8.4	25	73	15	135	45	1	7	44	1.43
527193--527319	11	11.0	11	72	15	78	48	3	3	44	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527108--527268	85	1.9	84	83	6	209	44	1	8	45	1.42
527208--527319	21	5.4	21	75	12	97	47	2	4	45	1.37
527422--527489	21	3.5	21	86	11	92	41	0	4	54	1.20
527508--527798	12	23.7	13	67	17	83	44	1	8	45	1.44
527508--527671	25	6.6	25	71	18	94	43	1	9	45	1.46
527612--527742	25	5.3	25	71	12	85	43	1	9	45	1.45
527612--527798	11	14.3	12	72	21	73	44	1	8	45	1.42
527662--527694	8	4.2	8	84	7	50	36	0	12	51	1.39
527578--527754	84	2.1	83	90	6	277	42	1	10	46	1.45
527707--527835	23	5.6	23	79	11	104	48	3	3	44	1.36
527620--527832	60	3.6	59	77	12	163	45	2	7	45	1.43
527781--527833	21	2.5	21	93	0	97	45	5	1	47	1.37
527922--527966	24	1.9	24	86	4	65	40	0	6	53	1.27
527933--527974	17	2.5	17	80	0	57	40	0	2	57	1.12
527977--528026	11	4.0	12	76	19	57	42	8	10	40	1.68
530250--530288	11	3.5	11	80	13	53	38	12	0	48	1.42
530235--530321	30	3.2	30	80	15	91	43	12	0	43	1.42
530243--530291	22	2.2	22	100	0	98	38	14	0	46	1.44
530264--530314	15	3.3	16	75	10	61	43	11	0	45	1.40
530265--530322	30	1.9	30	92	0	98	46	12	0	41	1.41
530274--530335	30	2.2	29	85	8	83	51	8	0	40	1.31
530507--530546	21	1.9	21	100	0	80	57	15	0	27	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530752--530816	28	2.3	29	82	10	91	46	13	1	38	1.53
530881--530929	21	2.3	20	80	16	55	57	16	0	26	1.40
530903--530987	39	2.2	39	95	4	154	41	17	2	38	1.63
530903--531011	39	2.8	38	87	8	121	44	17	1	36	1.60
531004--531041	9	4.2	9	83	10	51	65	2	0	31	1.06
531216--531251	11	3.2	11	84	7	54	36	19	22	22	1.95
544162--544241	32	2.5	32	85	4	108	47	28	5	18	1.70
544370--544401	15	2.1	15	100	0	64	37	43	12	6	1.68
548386--548421	14	2.6	14	90	0	54	58	2	13	25	1.49
553541--553583	21	2.0	21	81	0	50	30	30	25	13	1.94
553565--553714	68	2.2	68	86	3	205	28	28	26	17	1.98
554017--554088	29	2.5	29	90	0	108	37	9	12	40	1.76
554110--554172	30	2.1	30	88	5	92	34	6	22	36	1.80
554382--554449	22	3.0	22	97	2	127	19	26	27	26	1.99
560512--560662	68	2.2	68	85	4	198	28	27	26	17	1.98
560965--561036	29	2.5	29	90	0	108	37	9	12	40	1.76
561058--561120	30	2.1	30	91	5	101	34	6	20	38	1.78
561330--561397	22	3.0	22	97	2	127	19	26	27	26	1.99
563000--563051	19	2.7	20	79	11	63	25	7	0	67	1.17
565448--565500	27	2.0	27	85	7	74	50	0	0	49	1.00
565467--565675	104	2.0	104	79	7	226	44	9	8	38	1.66
565678--565717	19	2.0	20	85	9	55	60	2	7	30	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565748--565782	2	17.5	2	93	0	61	51	0	0	48	1.00
565792--565826	12	2.8	13	87	12	56	60	0	2	37	1.12
567170--567225	3	20.0	3	82	14	66	66	1	0	32	1.03
567170--567226	19	3.0	20	87	5	73	66	1	0	31	1.02
567170--567235	22	3.0	22	86	2	78	68	3	0	28	1.05
567577--567937	113	3.2	113	95	0	641	29	20	15	34	1.94
567577--568202	226	2.9	216	81	8	802	27	21	15	35	1.93
567835--568039	98	2.1	98	91	2	344	27	21	16	34	1.94
567931--568204	115	2.4	114	97	1	521	25	22	14	38	1.91
568638--568689	22	2.4	22	83	0	59	36	11	13	38	1.81
569047--569238	54	4.0	48	76	18	134	27	21	14	36	1.92
569095--569174	40	2.0	40	100	0	160	30	22	15	32	1.94
571308--571525	114	1.9	114	93	0	373	31	21	14	32	1.93
575788--575886	48	2.1	46	80	9	110	57	8	13	21	1.61
575821--575859	20	2.0	20	84	0	51	66	5	10	17	1.39
575944--575985	7	6.0	7	78	10	50	54	14	16	14	1.71
578207--578261	19	2.9	19	73	23	53	67	1	5	25	1.22
578243--578314	23	3.1	24	75	15	62	54	0	1	44	1.08
578321--578353	12	2.8	12	90	9	50	60	0	6	33	1.21
579616--579677	3	22.0	3	80	12	69	64	1	1	32	1.13
579616--579687	25	2.8	25	85	2	81	66	2	1	29	1.14
584194--584234	21	1.9	22	90	5	66	75	2	0	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588452--588501	7	7.3	7	97	2	93	44	0	42	14	1.44
589101--589147	23	2.0	24	87	4	69	27	0	0	72	0.85
593132--593237	2	56.0	2	79	14	109	42	0	0	56	1.05
595151--595217	4	16.2	4	77	9	55	25	4	0	70	1.06
595198--595237	14	2.7	14	84	7	53	32	2	0	65	1.06
595154--595230	40	1.9	40	82	15	97	27	3	0	68	1.06
595286--595414	39	3.5	37	75	16	135	27	4	1	66	1.20
595288--595414	18	7.0	17	69	15	76	26	4	1	66	1.20
598282--598318	18	2.1	18	85	14	51	32	13	10	43	1.79
601697--601733	18	2.1	18	85	14	51	32	13	10	43	1.79

Tables:   1   2   3   4   5   6   7   8