genome.fa.s8569.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008569.1 Hibiscus syriacus cultivar Beakdansim tig00111493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1513883

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1371369--1371414	22	2.0	22	87	4	65	52	8	2	36	1.45
1371276--1371589	134	2.4	134	89	2	490	52	7	0	38	1.35
1371418--1371460	22	2.0	22	90	0	68	51	9	0	39	1.34
1371421--1371646	76	2.9	76	88	5	337	53	8	0	37	1.32
1371520--1371570	15	3.3	15	72	20	50	52	5	0	41	1.25
1371552--1371616	22	3.0	22	90	0	85	52	6	0	41	1.26
1371418--1371647	80	3.0	77	87	5	340	52	8	0	38	1.32
1371369--1371639	54	5.1	54	76	12	242	52	8	0	38	1.35
1372295--1372352	2	29.0	2	100	0	116	50	0	0	50	1.00
1373303--1373447	64	2.3	64	83	7	170	31	23	18	26	1.98
1386102--1386145	21	2.1	21	100	0	88	25	38	9	27	1.86
1386105--1386153	21	2.3	21	92	0	80	22	34	10	32	1.88
1393295--1393323	5	6.0	5	92	8	51	79	0	0	20	0.74
1393297--1393323	14	1.9	14	100	0	54	81	0	0	18	0.69
1397642--1397700	27	2.1	28	81	3	66	59	5	0	35	1.20
1398239--1398277	18	2.1	19	90	4	62	64	0	5	30	1.15
1398531--1398610	41	2.0	40	87	2	115	33	11	12	42	1.78
1403110--1403176	27	2.6	25	72	13	66	40	16	17	25	1.90
1404054--1404098	21	2.1	21	84	8	56	31	26	24	17	1.97
1404893--1404919	2	13.5	2	100	0	54	51	0	0	48	1.00
1405586--1405739	30	5.1	30	92	1	247	21	20	25	32	1.98
1408812--1408856	21	2.1	21	84	8	56	31	26	24	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409247--1409286	16	2.4	17	83	4	55	22	5	25	47	1.71
1409656--1409728	2	37.5	2	94	5	132	49	0	0	50	1.00
1410413--1410561	30	5.0	30	95	0	255	21	20	24	33	1.97
1411992--1412037	18	2.8	16	83	6	56	30	28	6	34	1.82
1412524--1412590	26	2.5	26	80	7	73	53	1	4	40	1.30
1414508--1414560	21	2.6	21	87	3	72	26	20	22	30	1.98
1418099--1418225	35	3.6	35	84	2	148	37	11	9	41	1.74
1418099--1418221	17	7.0	18	77	10	69	36	12	8	42	1.74
1418070--1418225	70	2.2	70	80	8	167	35	11	8	44	1.71
1420001--1420081	40	2.0	40	97	0	153	39	9	20	29	1.85
1423639--1424030	209	1.9	209	89	3	610	36	20	6	35	1.79
1424236--1424815	200	2.9	198	79	6	654	28	18	12	40	1.87
1424777--1424854	20	3.8	20	76	6	68	30	14	11	43	1.80
1424796--1424850	21	2.7	20	83	16	69	27	14	10	47	1.78
1428093--1428554	228	2.0	229	89	2	707	36	19	8	35	1.82
1428811--1429324	199	2.6	197	80	4	567	29	19	12	38	1.89
1429286--1429359	20	3.7	20	81	0	76	31	18	8	41	1.80
1431744--1431802	29	2.0	29	96	0	109	49	15	11	23	1.77
1435319--1435377	29	2.0	29	96	0	109	50	13	11	23	1.74
1436430--1436462	16	2.1	16	100	0	66	12	18	24	45	1.83
1437502--1437538	14	2.6	14	95	0	65	40	18	0	40	1.51
1441903--1441976	25	2.8	25	78	9	67	36	2	20	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1448148--1448186	20	2.0	20	100	0	78	23	15	25	35	1.94
1449491--1449528	20	1.9	20	88	0	58	15	39	26	18	1.91
1449875--1449944	34	2.1	32	86	5	95	30	15	32	21	1.94
1451166--1451222	28	2.0	28	93	0	96	24	22	26	26	2.00
1452362--1452424	25	2.5	25	81	2	72	46	1	4	47	1.33
1452524--1452561	2	19.0	2	94	0	67	47	0	2	50	1.15
1455392--1455457	29	2.3	29	81	5	80	66	9	6	18	1.40
1455377--1455450	25	3.0	25	85	0	94	64	9	5	20	1.42
1455549--1455604	25	2.2	26	83	3	69	69	7	5	17	1.31
1462629--1462670	20	2.3	18	88	12	59	16	23	21	38	1.93
1470745--1470794	17	2.9	17	77	19	50	68	2	4	26	1.18
1470764--1470912	4	37.2	4	72	17	53	65	0	2	32	1.09
1471586--1471678	37	2.5	37	85	0	114	31	12	13	41	1.83
1472439--1473617	106	11.2	106	91	1	1776	22	17	24	34	1.96
1475249--1475313	23	2.8	23	79	6	69	1	13	6	78	1.01
1479655--1479712	19	2.9	21	78	17	70	70	1	3	24	1.12
1479656--1479731	19	3.7	20	77	18	68	69	1	1	27	1.04
1479670--1479852	24	7.9	23	71	15	110	63	1	3	31	1.19
1479866--1479902	2	18.5	2	100	0	74	51	0	0	48	1.00
1480531--1480620	37	2.4	37	86	0	117	30	13	14	42	1.84
1481952--1482031	24	3.5	22	70	16	63	50	16	7	26	1.71
1484876--1484900	13	1.9	13	100	0	50	8	8	20	64	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1486105--1486178	20	3.7	20	80	3	94	40	18	22	17	1.91
1486122--1486192	21	3.4	21	80	3	99	42	18	23	15	1.88
1486105--1486194	41	2.2	41	100	0	180	40	17	24	17	1.91
1486124--1486258	41	3.3	41	81	6	123	38	20	21	20	1.94
1486228--1486280	20	2.7	20	91	5	81	26	28	18	26	1.98
1486469--1486511	22	2.0	22	90	0	68	23	39	16	20	1.92
1488130--1488174	18	2.5	18	88	0	72	26	44	15	13	1.83
1488641--1488707	20	3.4	20	81	2	73	38	23	22	14	1.92
1488696--1488753	14	3.9	14	79	16	71	48	25	17	8	1.75
1488680--1488770	32	2.8	33	94	3	166	47	23	18	10	1.80
1488641--1488775	19	7.6	19	71	19	85	42	23	20	12	1.86
1488787--1488844	14	3.9	14	77	16	62	8	15	25	50	1.73
1488782--1488860	32	2.4	33	93	2	133	10	17	24	48	1.78
1488845--1488899	20	2.8	19	89	5	83	16	25	23	34	1.95
1491462--1491515	24	2.2	24	90	0	81	24	16	20	38	1.92
1493984--1494109	33	3.8	33	86	2	191	42	18	23	15	1.88
1493987--1494116	65	2.0	65	95	0	233	42	17	23	16	1.89
1494109--1494151	20	2.2	20	87	4	61	16	18	23	41	1.89
1494137--1494170	14	2.4	14	85	0	50	8	23	20	47	1.78
1494292--1494342	14	3.6	14	94	0	84	43	25	0	31	1.55
1495690--1495756	21	3.2	21	68	4	55	19	20	35	23	1.95
1495690--1495812	42	2.9	41	80	7	113	22	17	36	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1497792--1497932	19	7.8	19	68	17	77	43	21	21	12	1.85
1497817--1497902	33	2.6	33	92	1	136	38	25	24	11	1.89
1497887--1497937	19	2.7	19	93	0	84	47	21	19	11	1.81
1497927--1497968	19	2.2	19	91	0	66	14	19	19	47	1.82
1497933--1497999	19	3.5	19	89	2	107	11	16	22	49	1.78
1498492--1498543	20	2.6	20	93	0	86	25	19	28	26	1.98
1498511--1498588	41	1.9	41	86	0	111	20	16	21	41	1.91
1498492--1498585	20	4.7	20	77	2	80	22	18	24	35	1.96
1498574--1498670	21	4.7	21	85	2	142	15	25	18	40	1.90
1498574--1498687	41	2.8	41	86	2	131	16	25	18	39	1.91
1499139--1499210	31	2.3	31	78	0	81	29	13	9	47	1.75
1499659--1499854	86	2.3	87	94	0	340	42	11	8	37	1.72
1502595--1502635	21	2.0	21	90	9	66	46	17	9	26	1.79
1511946--1512010	31	2.1	31	94	0	112	50	4	7	36	1.52
1513628--1513696	23	3.0	23	89	0	102	26	26	27	20	1.99

Tables:   1   2   3   4   5   6   7   8

The End!