genome.fa.s8647.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008647.1 Hibiscus syriacus cultivar Beakdansim tig00111634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1422586

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291129--291159	15	2.1	15	93	0	53	0	29	0	70	0.87
301628--301669	22	2.0	22	90	4	68	33	0	26	40	1.56
301850--301895	21	2.2	21	92	0	74	41	0	2	56	1.11
311818--311858	5	8.0	5	84	15	57	78	0	0	21	0.76
311803--311858	15	3.7	15	81	11	60	75	1	3	19	1.05
312707--312740	17	2.1	16	88	5	50	58	0	0	41	0.98
315363--315439	36	2.1	36	100	0	154	32	10	18	38	1.84
325175--325227	2	27.0	2	96	3	99	49	0	0	50	1.00
326891--326946	16	3.6	16	81	13	62	44	28	19	7	1.77
327957--328031	26	3.2	24	64	28	61	45	24	13	17	1.84
327936--328031	47	2.1	46	90	2	147	43	22	14	18	1.87
331910--331949	13	3.3	13	80	20	59	12	22	47	17	1.81
331920--331988	18	3.8	18	90	0	102	13	18	53	14	1.72
336697--336731	18	1.9	18	100	0	70	17	17	48	17	1.81
337917--337998	34	2.4	35	87	2	121	41	31	2	24	1.68
338951--339027	35	2.2	35	86	4	111	36	0	20	42	1.53
340259--340291	2	16.5	2	100	0	66	48	0	51	0	1.00
344013--344066	24	2.2	24	83	6	74	55	3	9	31	1.49
344324--344369	15	3.1	15	81	12	58	56	2	0	41	1.11
344923--344986	19	3.2	20	76	13	60	26	1	0	71	0.94
344909--345062	26	5.8	25	74	17	107	25	3	1	68	1.14
344909--344951	8	5.2	8	81	13	52	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344908--344954	18	2.8	17	83	6	60	27	0	0	72	0.85
344992--345102	4	27.2	4	83	10	109	22	3	4	69	1.22
346087--346144	30	1.9	30	92	0	98	27	29	15	27	1.96
346092--346143	18	3.2	18	70	30	53	28	26	15	28	1.96
346117--346258	56	2.5	58	89	4	234	29	28	14	26	1.95
353590--353634	21	2.2	21	84	4	56	35	8	2	53	1.45
356006--356047	22	1.9	22	100	0	84	42	16	4	35	1.69
361421--361461	21	1.9	22	85	5	57	24	19	14	41	1.89
364264--364301	20	1.9	20	88	0	58	23	13	31	31	1.93
364331--364371	21	1.9	22	85	5	57	21	19	19	39	1.93
365548--365574	12	2.2	12	100	0	54	55	11	0	33	1.35
367848--367971	31	4.1	30	78	11	101	44	6	4	45	1.48
367874--367915	13	3.1	13	83	12	57	40	4	7	47	1.52
367871--367915	15	3.1	15	87	9	67	40	6	6	46	1.56
367876--367949	15	5.1	14	75	19	53	44	4	4	47	1.41
367902--367981	18	4.8	17	73	18	69	45	3	2	48	1.33
368025--368123	2	51.0	2	92	6	168	49	0	1	49	1.07
368027--368189	34	4.8	34	79	15	126	46	3	2	47	1.31
368161--368275	13	8.5	13	73	16	99	41	5	5	47	1.48
368259--368313	21	2.7	19	79	20	58	47	3	0	49	1.19
368455--368507	21	2.6	21	82	8	56	45	5	1	47	1.37
368497--368532	11	3.3	11	88	0	54	52	13	2	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368570--368616	18	2.5	19	83	16	62	46	4	2	46	1.34
368517--368669	74	2.1	75	79	8	170	44	4	3	47	1.39
368624--368653	14	2.1	14	93	0	51	46	0	6	46	1.29
368590--368704	54	2.1	55	87	6	162	46	6	4	43	1.48
368758--368827	20	3.5	20	82	7	79	47	5	5	41	1.51
368790--368844	24	2.3	23	84	3	65	41	7	5	45	1.55
368961--369006	21	2.2	21	92	0	74	39	6	6	47	1.55
369024--369115	36	2.5	37	84	5	125	43	5	8	42	1.58
369121--369164	18	2.7	15	86	13	52	43	0	6	50	1.29
369109--369179	24	2.9	24	81	14	83	45	1	5	47	1.35
369138--369176	18	2.2	18	86	9	53	43	0	7	48	1.31
369234--369290	14	3.9	14	73	13	51	45	1	1	50	1.22
369240--369302	31	2.0	31	90	0	99	42	1	3	52	1.27
369351--369417	29	2.3	29	87	5	91	43	1	4	50	1.31
369755--369947	99	1.9	102	80	9	225	34	26	4	34	1.77
370178--370235	6	9.7	6	78	0	62	39	44	10	5	1.61
370178--370245	12	5.7	12	76	0	55	41	41	10	7	1.67
370178--370239	18	3.4	18	95	0	106	40	41	11	6	1.66
374914--374955	15	2.7	15	85	10	50	45	28	0	26	1.54
376523--376550	14	2.0	14	100	0	56	21	21	0	57	1.41
385501--385962	230	2.0	232	99	0	910	32	10	27	29	1.90
388680--388732	18	2.9	18	91	0	88	26	35	20	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389087--389140	18	2.9	18	81	13	65	48	25	0	25	1.52
392780--392877	41	2.4	41	91	0	151	31	26	20	21	1.98
392780--392863	23	3.9	23	69	15	79	32	23	20	23	1.98
392843--392877	18	1.9	18	100	0	70	28	34	22	14	1.93
393231--393281	18	2.8	17	82	11	57	50	21	0	27	1.48
394097--394130	17	2.1	16	88	5	50	76	0	8	14	1.01
394606--394655	24	2.1	24	85	7	66	60	12	2	26	1.43
404333--404366	17	2.1	16	88	5	50	76	0	8	14	1.01
404841--404890	24	2.1	24	85	7	66	60	12	2	26	1.43
410661--410750	47	1.9	47	83	0	117	36	27	14	21	1.92
411662--411855	96	2.0	96	100	0	388	36	9	16	38	1.81
412554--412612	23	2.6	23	88	0	91	40	6	18	33	1.77
412660--413182	199	2.6	199	86	3	671	30	14	14	40	1.86
417475--417517	21	2.0	21	81	0	50	30	30	25	13	1.94
417538--417578	20	2.0	20	90	0	64	26	29	31	12	1.92
417497--417647	67	2.2	68	89	2	225	27	27	26	18	1.98
417949--418019	29	2.4	29	90	0	106	39	9	14	36	1.79
418035--418111	30	2.5	30	91	2	118	40	5	23	31	1.76
418322--418363	22	1.9	22	90	0	66	21	26	26	26	1.99
418329--418380	23	2.3	22	93	3	86	17	25	30	26	1.97
418329--418388	23	2.7	23	89	2	77	18	23	28	30	1.98
424420--424462	21	2.0	21	81	0	50	30	30	25	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424483--424522	19	2.0	20	90	4	64	27	30	30	12	1.93
424442--424591	67	2.3	67	87	3	205	27	28	24	19	1.98
424555--424592	20	1.9	20	88	0	58	23	34	31	10	1.89
424893--424964	29	2.5	29	90	0	108	38	9	13	37	1.78
424978--425054	30	2.5	30	91	2	118	40	5	23	31	1.76
425265--425323	22	2.6	23	94	2	102	18	27	30	23	1.98
428333--428981	200	3.2	199	84	2	809	31	14	14	39	1.86
428802--429340	179	3.0	178	91	3	807	31	14	13	39	1.85
429557--429784	117	1.9	118	89	4	354	35	22	5	36	1.77
429675--429853	67	2.7	68	88	3	265	36	22	5	35	1.78
429741--430086	117	3.0	117	89	3	518	36	21	5	35	1.78
429544--429967	184	2.3	184	94	1	735	36	21	6	35	1.79
429924--430020	51	1.9	51	93	0	167	34	23	3	39	1.71
429975--430152	66	2.7	66	91	1	277	39	20	4	34	1.73
430988--431027	18	2.2	18	95	0	71	5	37	0	57	1.21
433786--433834	20	2.5	20	93	0	80	16	14	22	46	1.82
433875--434026	69	2.2	70	92	1	252	32	16	12	38	1.86
433945--434855	182	5.0	181	89	2	1280	27	15	14	42	1.86
437179--437281	34	3.0	35	82	4	129	42	29	0	27	1.62
437762--438048	148	1.9	148	95	0	520	46	10	7	36	1.66
438222--438298	35	2.2	35	85	0	109	32	1	23	42	1.62
439430--439531	32	3.3	32	76	10	79	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441311--441350	21	1.9	21	94	0	71	20	37	20	22	1.94
448295--448383	38	2.4	38	88	7	137	37	38	11	13	1.81
448247--448856	262	2.3	259	89	2	929	36	26	12	24	1.91
449562--449610	22	2.3	21	89	3	71	65	2	0	32	1.04
450962--451086	66	1.9	66	86	0	178	36	26	27	10	1.89
464068--464159	35	2.6	35	82	3	114	25	11	21	41	1.87
469851--469897	15	3.0	15	77	22	60	65	8	0	25	1.20
478338--478363	2	13.0	2	100	0	52	0	50	0	50	1.00
480269--480314	19	2.3	21	88	7	69	19	8	6	65	1.43
482529--482571	21	2.0	21	82	8	52	20	18	9	51	1.74

Tables:   1   2   3   4   5   6   7   8