genome.fa.s8647.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008647.1 Hibiscus syriacus cultivar Beakdansim tig00111634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1422586

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583626--583672	20	2.4	19	82	10	67	53	12	17	17	1.73
583635--583677	20	2.3	18	88	11	61	51	13	16	18	1.77
585794--585837	21	2.1	21	86	0	61	40	9	31	18	1.81
587725--587773	19	2.6	19	93	0	80	30	2	10	57	1.43
587892--588659	197	3.9	198	96	1	1416	36	15	17	30	1.91
590125--590216	6	15.3	6	81	0	76	38	7	33	20	1.81
590128--590204	36	2.1	36	92	0	127	36	9	33	20	1.85
590140--590220	9	9.0	9	77	0	81	37	6	33	23	1.80
590128--590216	12	7.4	12	87	0	97	37	7	33	21	1.82
591414--591447	16	2.1	16	88	0	50	47	8	20	23	1.78
591740--591785	22	2.1	22	87	0	65	39	8	10	41	1.71
591811--591875	23	2.8	23	88	0	94	33	4	21	40	1.74
592171--592215	22	2.0	22	83	8	56	42	11	8	37	1.72
592233--592305	23	3.2	23	88	0	101	34	4	21	39	1.73
592665--592737	23	3.2	23	88	0	101	34	4	21	39	1.73
593034--593078	22	2.0	22	83	8	56	42	11	8	37	1.72
593096--593168	23	3.2	23	88	0	101	34	4	21	39	1.73
591600--593944	432	5.4	431	97	0	4419	40	7	11	39	1.70
591600--593944	863	2.7	863	98	0	4484	40	7	11	39	1.70
593528--593600	23	3.2	23	88	0	101	34	4	21	39	1.73
596751--596810	25	2.4	25	88	0	84	33	8	15	43	1.76
597158--597229	23	3.2	23	84	4	92	34	4	20	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597158--597216	22	2.6	22	89	2	82	37	5	18	38	1.73
597158--597240	45	1.9	42	85	7	112	34	4	20	39	1.74
597496--597545	25	2.0	25	96	0	91	26	8	22	44	1.80
597931--597967	18	2.1	18	89	0	56	32	5	10	51	1.60
597923--597969	24	2.0	24	86	0	67	34	4	14	46	1.64
598238--598324	39	2.2	39	93	0	147	49	20	12	17	1.79
598753--598817	23	2.8	23	85	0	85	35	4	20	40	1.73
598745--598822	23	3.5	22	79	10	70	35	3	20	39	1.71
599175--599247	23	3.2	23	88	0	101	34	4	21	39	1.73
598543--600456	430	4.5	431	96	1	3504	41	7	11	38	1.71
599607--599669	23	2.7	23	90	0	90	39	4	17	38	1.71
599607--599679	23	3.2	23	86	3	85	36	4	19	39	1.71
600033--600105	23	3.2	23	92	0	119	34	5	21	38	1.77
598543--600456	858	2.2	861	96	1	3531	41	7	11	38	1.71
610436--610469	14	2.3	15	90	5	52	47	0	0	52	1.00
610443--610531	3	30.3	3	70	4	56	43	2	1	52	1.20
610436--610488	20	2.7	20	90	0	79	43	1	0	54	1.11
612083--612121	21	1.9	20	84	5	51	23	2	12	61	1.43
621793--621887	42	2.2	43	88	3	138	26	18	22	32	1.97
622448--622481	14	2.3	15	90	5	52	47	0	0	52	1.00
622448--622500	20	2.7	20	87	0	70	43	3	0	52	1.19
624101--624139	21	1.9	20	84	5	51	23	2	12	61	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628562--628700	21	6.8	20	72	8	82	37	25	16	20	1.93
628667--628896	20	11.5	20	80	5	223	36	24	18	20	1.94
629246--629335	14	5.7	14	69	23	63	44	21	24	10	1.82
629238--629352	33	3.5	33	97	0	221	46	19	23	10	1.80
629260--629357	19	5.7	19	69	22	90	44	20	23	11	1.83
629369--629425	14	3.7	14	75	20	60	10	24	22	42	1.85
629366--629430	33	2.0	33	100	0	130	10	24	21	43	1.84
629409--629486	41	1.9	41	97	0	147	12	25	16	44	1.83
629410--629485	21	3.7	21	83	3	109	11	25	17	46	1.82
629565--629635	33	2.2	33	92	0	115	47	18	22	11	1.80
629817--629870	21	2.5	22	78	3	65	20	16	38	24	1.92
630017--630210	20	9.6	20	81	5	212	19	19	25	35	1.95
630017--630210	60	3.2	60	81	3	237	19	19	25	35	1.95
630197--630279	21	4.0	21	73	6	78	25	16	24	33	1.96
630177--630275	42	2.4	43	77	11	100	21	18	23	37	1.94
634445--634531	45	1.9	45	90	0	138	39	14	17	28	1.89
635891--635942	16	3.2	17	72	22	58	42	0	21	36	1.53
642885--642910	2	13.0	2	100	0	52	50	0	0	50	1.00
644027--644155	45	2.9	45	97	0	249	35	10	20	32	1.88
646982--647054	22	3.3	22	90	0	119	17	24	41	16	1.90
658679--658718	21	1.9	21	94	0	71	32	30	15	22	1.94
658744--658780	19	1.9	19	94	0	65	21	37	16	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658679--658888	64	3.2	63	81	6	197	30	25	16	27	1.96
664685--664764	24	3.5	22	75	14	83	23	25	23	27	2.00
667354--667392	19	2.1	19	95	0	69	20	38	15	25	1.92
667289--667453	64	2.5	65	81	8	185	32	23	16	27	1.96
667339--667500	64	2.5	63	79	9	177	30	25	16	28	1.96
680463--680690	7	31.0	7	70	23	82	75	0	14	10	1.04
680459--680624	17	10.1	16	73	21	116	75	0	13	11	1.05
680509--680607	36	2.8	34	81	14	96	76	0	12	11	1.01
680460--680609	65	2.3	65	79	16	150	76	0	12	11	1.03
680459--680611	7	21.9	7	74	19	108	75	0	13	11	1.04
680466--680649	53	3.6	52	76	16	154	76	0	13	10	1.03
680466--680701	42	5.9	38	75	18	150	75	0	14	10	1.04
680460--680672	96	2.2	95	81	14	244	75	0	14	10	1.04
680540--680672	17	7.3	17	69	18	56	75	0	14	9	1.03
680520--680701	41	4.6	39	73	17	139	74	0	14	10	1.06
680485--680701	19	10.8	19	64	23	63	74	0	15	10	1.06
680705--680789	45	1.9	45	87	2	127	36	17	29	16	1.92
681731--681765	17	2.1	17	89	10	54	42	2	25	28	1.69
682074--682361	55	5.2	55	87	5	377	27	17	24	30	1.97
682074--682399	55	5.9	55	86	5	374	28	17	24	30	1.97
684945--685159	105	2.0	105	100	0	430	30	13	12	43	1.81
688566--688685	35	3.3	36	89	5	181	43	20	5	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688617--688677	21	3.2	21	65	29	64	42	21	4	31	1.74
688568--688712	35	4.1	36	83	11	142	41	19	6	33	1.76
692743--692776	16	2.1	16	94	0	59	32	26	8	32	1.87
693184--693303	35	3.3	36	87	5	172	44	19	5	31	1.72
693235--693295	21	3.2	21	63	29	55	44	19	4	31	1.72
694769--694903	51	2.6	51	83	0	153	17	31	29	21	1.96
698459--698545	35	2.5	34	80	12	97	55	10	8	26	1.61
698758--698792	15	2.3	15	90	0	52	14	31	20	34	1.92
699139--699176	18	2.1	18	95	0	67	23	23	23	28	1.99
700686--701018	111	3.0	111	92	0	558	45	10	6	36	1.66
701296--701410	49	2.3	50	79	5	135	23	26	31	19	1.98
707709--707959	75	3.5	72	75	11	176	48	3	5	42	1.43
707749--707959	36	5.8	36	75	13	171	49	3	4	41	1.41
707906--708015	56	1.9	57	87	3	159	50	5	5	39	1.49
707926--707980	21	2.5	22	80	11	69	47	5	5	41	1.49
707951--708050	36	2.9	34	82	10	112	47	4	8	41	1.52
708093--708123	15	2.1	15	93	0	53	22	3	0	74	0.96
713011--713058	24	2.0	24	83	0	60	37	25	16	20	1.93
721534--721655	36	3.6	34	73	18	96	45	3	9	41	1.52
721532--721650	31	3.6	30	73	18	94	46	3	9	41	1.52
721579--721715	72	1.9	72	89	3	213	50	4	6	38	1.48
721578--721715	36	3.8	36	85	2	188	50	4	6	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721698--721731	14	2.5	14	90	4	52	58	11	2	26	1.47
721658--721764	50	2.2	50	84	5	137	51	6	4	37	1.49
721622--721780	86	1.9	85	85	5	223	49	6	5	38	1.52
721828--721861	17	1.9	18	88	5	52	20	5	0	73	1.04
727302--727338	17	2.3	16	90	9	58	35	24	24	16	1.95
727309--727347	17	2.3	17	95	0	69	35	17	28	17	1.94
727990--728058	23	3.1	21	74	10	59	23	10	24	42	1.85
728065--728119	23	2.4	23	93	0	92	12	23	27	36	1.91
730774--730896	43	2.9	42	72	13	110	57	2	1	38	1.22
732273--732414	39	3.7	38	81	7	153	22	19	9	47	1.78

Tables:   1   2   3   4   5   6   7   8