genome.fa.s8647.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008647.1 Hibiscus syriacus cultivar Beakdansim tig00111634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1422586

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1263968--1264043	20	3.8	20	94	0	134	11	23	19	44	1.84
1264032--1264077	21	2.2	21	96	0	83	23	17	30	28	1.97
1264053--1264149	41	2.4	41	87	0	140	18	21	25	34	1.96
1264146--1264180	17	2.1	17	100	0	70	17	17	22	42	1.88
1264138--1264207	22	3.4	22	81	18	105	17	18	27	37	1.93
1264213--1264238	13	2.0	13	100	0	52	30	7	23	38	1.83
1264319--1264379	6	10.5	6	94	5	108	32	50	16	0	1.45
1264862--1264898	6	6.5	6	90	9	60	0	16	51	32	1.45
1264962--1265036	22	3.5	22	73	10	84	38	25	17	18	1.92
1265025--1265121	41	2.4	41	89	0	149	34	26	19	19	1.96
1265056--1265142	21	4.2	21	77	2	104	32	26	17	24	1.97
1265306--1265384	2	39.5	2	100	0	158	49	0	0	50	1.00
1265456--1265484	15	1.9	15	100	0	58	48	20	6	24	1.74
1265627--1265991	179	2.0	183	90	4	589	41	3	9	45	1.54
1275339--1275364	6	4.3	6	100	0	52	34	0	19	46	1.50
1277262--1277682	81	5.2	81	89	4	647	31	21	10	35	1.88
1282907--1282935	15	1.9	15	100	0	58	34	20	24	20	1.97
1294229--1294271	19	2.3	19	84	8	52	32	2	16	48	1.58
1294333--1294378	19	2.4	19	100	0	92	36	0	19	43	1.51
1296254--1296673	81	5.2	81	86	2	513	34	19	8	37	1.82
1296254--1296673	161	2.6	162	84	3	551	34	19	8	37	1.82
1305028--1305353	6	55.0	6	97	2	624	33	0	16	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305567--1305608	2	21.0	2	100	0	84	50	0	0	50	1.00
1305815--1305856	14	3.0	14	96	0	75	14	14	19	52	1.75
1307409--1307492	42	2.0	42	95	0	150	35	2	9	52	1.47
1307557--1307586	14	2.1	14	93	0	51	53	3	16	26	1.59
1307619--1307698	40	1.9	41	85	7	108	36	11	11	41	1.77
1309768--1309907	29	4.9	28	83	3	163	45	17	2	33	1.64
1309768--1309907	57	2.4	57	89	3	210	45	17	2	33	1.64
1316652--1316843	29	6.8	29	80	8	200	41	17	3	37	1.66
1316682--1316843	82	1.9	86	85	7	226	40	17	3	37	1.68
1316844--1316890	17	2.7	18	80	6	69	12	19	48	19	1.80
1317852--1317915	18	3.6	18	76	0	74	37	20	1	40	1.62
1318056--1318117	29	2.1	30	84	3	81	32	17	12	37	1.88
1318244--1318294	21	2.4	22	83	6	70	21	17	27	33	1.96
1318433--1318500	33	2.1	33	94	0	118	27	14	11	45	1.80
1319457--1319505	22	2.3	20	79	6	53	22	26	22	28	1.99
1321987--1322056	12	5.8	12	78	6	70	17	14	18	50	1.79
1321987--1322058	24	3.0	24	80	8	92	18	13	18	50	1.79
1324079--1324113	10	3.5	10	85	14	54	22	31	20	25	1.98
1324067--1324136	20	3.4	20	90	7	97	22	30	21	25	1.99
1326622--1326691	12	5.8	12	72	12	54	17	14	17	51	1.77
1326622--1326693	24	3.0	24	85	0	99	18	13	16	51	1.77
1326853--1326889	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1328242--1328285	9	4.9	9	91	0	61	45	18	2	34	1.62
1330831--1330862	3	10.7	3	100	0	64	0	31	0	68	0.90
1333669--1333702	17	2.1	16	88	5	50	76	0	8	14	1.01
1343429--1343462	17	2.1	16	88	5	50	76	0	8	14	1.01
1362504--1362578	1	75.0	1	75	0	60	86	0	13	0	0.57
1362501--1362578	11	6.8	11	80	16	88	85	0	14	0	0.59
1362501--1362576	5	15.4	5	81	13	79	85	0	14	0	0.60
1362501--1362577	15	5.1	15	83	10	88	85	0	14	0	0.59
1363560--1363773	52	4.1	52	94	3	378	23	15	23	37	1.93
1363722--1363933	83	2.6	83	92	2	354	25	11	22	41	1.87
1364526--1365320	114	6.9	118	92	3	1230	36	13	19	29	1.91
1364526--1365320	232	3.4	230	90	5	1199	36	13	19	29	1.91
1367556--1367593	16	2.4	16	82	8	51	57	7	5	28	1.49
1367914--1367981	1	68.0	1	82	0	73	0	10	0	89	0.48
1367914--1367984	8	7.9	9	84	12	85	0	11	0	88	0.51
1367914--1367981	13	5.1	13	83	16	86	0	10	0	89	0.48
1380750--1380860	3	37.7	3	92	3	190	65	0	0	34	0.93
1381408--1381466	21	2.8	21	81	0	73	32	33	16	16	1.92
1388358--1388417	29	2.1	28	93	3	102	48	11	13	26	1.76
1398035--1398082	10	4.8	10	82	10	53	14	22	25	37	1.92
1398045--1398092	19	2.5	20	79	6	53	18	25	25	31	1.98
1398097--1398141	19	2.4	19	92	3	74	22	53	22	2	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398097--1398141	14	3.2	15	84	12	60	22	53	22	2	1.57
1398100--1398137	9	4.2	9	83	9	51	21	55	21	2	1.56
1398097--1398141	5	9.6	5	85	9	60	22	53	22	2	1.57
1402499--1402558	29	2.1	28	93	3	102	50	10	11	28	1.71
1404804--1404830	14	1.9	14	100	0	54	66	0	0	33	0.92
1408748--1408798	21	2.4	21	80	3	57	47	15	9	27	1.77
1419326--1419439	51	2.2	51	96	0	210	29	23	13	33	1.93

Tables:   1   2   3   4   5   6   7   8

The End!