genome.fa.s8647.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008647.1 Hibiscus syriacus cultivar Beakdansim tig00111634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1422586

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483875--483926	12	4.2	12	78	7	50	73	9	17	0	1.09
483877--483920	12	3.6	12	81	6	52	70	9	20	0	1.14
483863--483919	25	2.2	26	84	3	71	66	10	22	0	1.22
484936--484998	33	1.9	32	84	9	83	28	14	26	30	1.95
485603--485848	107	2.3	105	83	9	290	30	18	11	39	1.86
485815--485924	36	3.1	36	81	1	132	31	16	11	40	1.85
485962--486020	31	1.9	31	86	3	84	28	13	15	42	1.85
486289--486370	28	2.9	28	83	7	96	25	12	12	50	1.74
486379--486869	134	3.7	134	88	2	668	26	30	17	25	1.97
487421--487493	35	2.1	35	100	0	146	34	23	17	24	1.96
488782--488806	2	12.5	2	100	0	50	48	0	0	52	1.00
490824--490906	3	27.7	3	100	0	166	66	0	0	33	0.92
490911--491026	3	38.7	3	98	0	223	33	0	0	65	0.99
494588--494640	2	26.5	2	100	0	106	49	0	0	50	1.00
503324--503553	120	1.9	120	82	5	286	35	19	11	33	1.88
504669--504706	14	2.6	15	95	4	69	26	13	36	23	1.91
505138--505191	20	2.6	21	77	11	58	24	24	18	33	1.97
505181--505308	41	3.1	41	94	1	213	36	20	21	21	1.95
505181--505308	20	6.3	20	76	5	132	36	20	21	21	1.95
505181--505310	61	2.1	61	81	5	147	36	20	21	21	1.96
506131--506177	24	2.0	24	95	0	85	27	21	17	34	1.95
508603--508695	20	4.7	20	85	2	116	36	23	19	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508603--508696	40	2.3	40	90	3	145	36	23	20	20	1.95
508728--508821	33	2.8	33	85	6	118	14	21	20	43	1.87
508923--508959	14	2.6	14	86	0	56	48	21	0	29	1.50
510334--510425	42	2.2	42	80	3	105	22	17	39	20	1.93
510906--511015	34	3.3	34	79	2	141	45	20	19	14	1.85
511045--511170	20	6.6	20	82	10	156	19	19	20	39	1.92
511026--511147	34	3.4	34	80	12	145	18	20	20	40	1.91
511026--511170	74	2.0	74	90	0	227	18	20	20	41	1.91
513432--513489	18	2.8	22	72	20	70	18	13	37	29	1.90
513432--513493	22	3.0	22	75	18	78	19	14	38	27	1.90
513690--513783	20	4.7	20	81	2	125	22	20	20	37	1.95
513670--513783	61	1.9	60	88	1	174	23	20	21	35	1.96
513773--513825	21	2.5	21	78	0	61	33	16	26	22	1.96
515093--515130	2	19.0	2	100	0	76	50	0	0	50	1.00
516242--516318	29	2.6	28	91	4	118	41	19	11	27	1.86
516525--516661	60	2.3	59	77	9	134	35	13	13	37	1.84
517533--517921	35	10.5	35	76	13	265	43	3	7	46	1.47
517533--517942	37	11.0	36	77	12	300	43	2	6	46	1.45
517575--517814	77	3.1	76	82	10	244	43	2	7	45	1.48
517685--517967	36	7.9	35	78	11	208	44	2	4	48	1.37
517918--517989	11	6.3	12	73	16	73	38	1	0	59	1.06
517927--517995	22	3.2	22	95	2	122	40	1	0	57	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523295--523355	22	2.8	22	82	0	86	22	32	26	18	1.97
524933--524973	18	2.3	18	91	0	64	46	21	31	0	1.52
526878--526908	12	2.6	12	100	0	62	22	54	22	0	1.44
527117--527150	18	1.9	18	88	5	52	17	2	2	76	1.04
527358--527416	3	19.7	3	83	13	77	35	0	0	64	0.94
527361--527420	29	2.1	29	93	0	102	33	0	0	66	0.92
527489--527513	2	12.5	2	100	0	50	48	0	0	52	1.00
527552--527590	14	2.7	14	84	4	51	5	12	0	82	0.83
527519--527620	36	2.8	35	81	11	100	10	10	1	76	1.10
527555--527627	31	2.4	31	88	4	103	9	6	1	82	0.91
527527--527639	31	3.6	32	71	14	92	11	11	0	76	1.08
529575--529613	14	2.7	15	80	15	55	30	25	20	23	1.98
529705--529738	10	3.5	10	84	8	52	11	5	5	76	1.14
529695--529745	19	2.7	19	87	0	75	19	3	5	70	1.24
534656--534690	14	2.6	14	86	4	54	65	0	0	34	0.93
534757--534800	22	2.0	22	100	0	88	63	0	13	22	1.29
534758--534808	22	2.3	22	93	0	84	64	0	11	23	1.26
535602--535644	12	3.6	12	81	9	52	46	0	6	46	1.30
535602--535643	16	2.9	14	83	13	50	45	0	7	47	1.30
536382--537527	165	6.9	165	87	3	1402	25	20	23	30	1.98
536633--537527	495	1.8	495	93	1	1546	25	20	22	30	1.98
542168--542208	14	2.9	14	88	0	55	29	14	19	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542330--542437	49	2.2	47	78	13	112	47	2	0	50	1.15
542391--542462	27	2.7	26	82	4	90	41	0	2	55	1.14
542373--542530	83	1.9	80	80	12	178	44	0	3	51	1.17
542522--542562	12	3.4	12	81	18	50	46	0	0	53	1.00
542500--542562	23	2.6	24	82	7	74	47	0	0	52	1.00
542547--542611	28	2.3	27	79	10	67	46	3	1	49	1.27
542622--542695	23	3.1	23	75	18	71	47	1	1	50	1.18
542661--542718	27	2.1	29	81	12	68	53	0	1	44	1.10
542892--543007	42	2.8	42	87	0	160	47	16	15	20	1.83
544423--544481	20	3.0	19	85	5	73	40	16	15	27	1.89
544473--544563	20	4.5	20	82	12	96	40	25	12	21	1.88
544491--544644	41	3.8	40	83	3	166	35	24	14	26	1.93
544513--544624	20	5.5	20	77	12	77	33	24	15	27	1.95
544533--544646	20	5.6	19	75	14	79	33	23	14	28	1.94
544782--544820	16	2.6	15	84	11	53	28	5	0	66	1.12
545559--545612	24	2.2	24	90	0	81	22	18	18	40	1.91
546133--546274	9	15.3	9	69	22	57	71	2	6	20	1.19
546148--546192	3	15.7	3	78	17	51	71	0	0	28	0.87
546150--546203	23	2.2	23	87	12	72	70	0	0	29	0.88
546148--546203	9	6.8	8	84	10	60	71	0	0	28	0.86
547809--547858	12	4.2	12	80	10	59	66	2	0	32	1.03
547810--547858	23	2.1	23	85	7	64	65	2	0	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548919--549225	100	3.0	102	84	8	404	21	17	23	37	1.94
549024--549249	110	2.1	110	90	1	355	23	16	23	36	1.94
553000--553028	3	9.7	3	100	0	58	68	0	0	31	0.89
553039--553106	35	1.9	35	85	5	93	73	2	8	14	1.19
552976--553132	14	10.6	14	68	17	61	71	1	8	18	1.17
556743--556778	18	2.0	18	88	0	54	55	22	2	19	1.56
557020--557117	49	2.0	49	92	4	162	36	17	21	24	1.94
557081--557123	20	2.2	20	86	0	59	44	20	20	13	1.86
558650--558743	21	4.5	21	81	4	109	20	19	38	22	1.94
558650--558772	42	2.9	41	85	4	165	22	18	36	21	1.95
560904--560989	20	4.4	20	88	4	131	48	19	18	12	1.80
560897--560989	39	2.4	39	87	8	143	48	19	18	13	1.81
561307--561364	22	2.6	22	86	0	80	15	15	43	25	1.86
561468--561505	20	2.0	20	89	5	60	47	13	13	26	1.79
561512--561560	20	2.5	20	89	0	71	20	12	22	44	1.84
561531--561622	40	2.3	38	80	14	105	22	14	23	39	1.91
561554--561620	20	3.3	20	85	0	98	23	16	23	35	1.95
561554--561660	40	2.7	40	78	5	101	24	14	27	34	1.93
563820--563905	32	2.7	32	77	1	100	20	6	29	43	1.78
564641--564685	16	2.8	16	79	0	63	11	4	26	57	1.52
564678--564735	16	3.6	16	75	9	64	6	15	25	51	1.68
569797--569829	11	3.2	11	83	16	52	9	18	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572512--572928	121	3.4	119	77	8	401	36	13	10	38	1.80
573040--573103	25	2.6	25	97	0	119	31	6	17	45	1.73
573512--573570	30	1.9	30	89	3	91	33	15	11	38	1.84
574455--574541	44	2.0	44	88	0	129	29	9	21	39	1.85
578126--578180	29	1.9	28	100	0	101	27	18	21	32	1.96
578574--578602	3	9.7	3	100	0	58	0	34	0	65	0.93
579953--580046	31	3.0	31	95	3	163	18	19	24	38	1.93
580912--580955	18	2.4	18	96	0	79	31	0	22	45	1.53
580976--581035	29	2.2	28	82	8	70	41	15	13	30	1.85
582859--583343	230	2.1	229	95	0	871	45	7	7	39	1.60

Tables:   1   2   3   4   5   6   7   8