genome.fa.s8719.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008719.1 Hibiscus syriacus cultivar Beakdansim tig00111774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4817204

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  6  of  18  ( 2140 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1506323--1506366	21	2.1	21	86	0	61	18	6	31	43	1.76
1507322--1507435	22	5.2	22	89	4	176	41	0	10	48	1.38
1511440--1511569	66	2.0	66	86	3	181	37	21	20	20	1.94
1513497--1513561	23	2.8	23	83	0	76	24	21	27	26	1.99
1524417--1524516	31	3.2	31	78	7	112	31	17	20	32	1.95
1529261--1529350	32	2.8	32	77	8	94	31	14	21	33	1.93
1543163--1543207	22	2.0	22	87	8	65	15	6	4	73	1.21
1553256--1553613	194	1.8	193	81	1	448	37	11	11	39	1.79
1558214--1558257	21	2.1	21	87	8	63	15	6	4	72	1.22
1563837--1563875	20	2.0	20	89	0	60	30	10	23	35	1.88
1568815--1568849	14	2.5	14	100	0	70	37	20	20	22	1.95
1571338--1571735	196	2.0	202	97	2	754	31	15	13	39	1.86
1581399--1581454	2	28.0	2	100	0	112	50	0	0	50	1.00
1583059--1583111	2	26.5	2	100	0	106	50	0	0	49	1.00
1583807--1584729	238	3.9	239	83	3	1068	32	16	15	35	1.90
1584312--1584391	42	1.9	42	84	5	108	30	20	15	35	1.93
1583807--1584723	478	1.9	478	83	2	1180	32	16	15	35	1.90
1584569--1584887	155	2.1	156	86	1	435	31	16	15	35	1.91
1584334--1585073	393	1.9	392	84	2	1002	32	15	16	35	1.90
1585336--1585857	132	4.0	132	83	0	623	30	21	17	30	1.96
1586060--1586125	16	4.2	16	78	16	59	31	1	1	65	1.11
1586060--1586117	3	18.3	3	77	13	55	32	1	1	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1586216--1586284	21	3.2	22	69	17	63	37	31	0	30	1.58
1586230--1586295	21	3.1	21	72	20	73	30	33	0	36	1.58
1604547--1604616	19	3.6	19	70	18	56	11	12	4	71	1.28
1604614--1604638	11	2.3	11	100	0	50	16	36	8	40	1.77
1617003--1617056	28	1.9	28	96	0	99	35	20	20	24	1.96
1622535--1622831	165	1.8	165	81	0	378	32	23	20	23	1.98
1626144--1626197	24	2.3	23	78	18	58	51	9	7	31	1.61
1626679--1626748	24	2.9	24	91	0	104	32	25	24	17	1.96
1626789--1626840	23	2.3	23	89	0	77	32	15	26	25	1.95
1630625--1630669	22	2.0	22	100	0	90	28	22	17	31	1.97
1631154--1631179	12	2.2	12	100	0	52	7	46	0	46	1.31
1633044--1633089	24	1.9	24	90	0	74	30	23	26	19	1.98
1633072--1633181	23	4.8	23	78	2	105	34	23	23	18	1.96
1633072--1633169	46	2.1	47	81	12	123	33	23	23	19	1.97
1633085--1633181	46	2.1	46	84	7	126	36	21	22	19	1.95
1633258--1633311	16	3.5	16	85	9	60	42	20	9	27	1.82
1639811--1640111	135	2.2	135	83	1	370	28	19	17	33	1.95
1640668--1641102	55	7.9	55	86	4	549	32	20	11	35	1.88
1640678--1641103	113	3.8	112	87	3	594	31	20	10	36	1.88
1640678--1641103	168	2.6	166	89	4	624	31	20	10	36	1.88
1643573--1643722	32	4.6	31	70	8	84	36	5	9	48	1.58
1646395--1646420	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1647182--1647219	2	19.0	2	100	0	76	50	0	0	50	1.00
1647345--1647395	13	3.6	13	76	19	57	27	0	5	66	1.14
1647337--1647401	30	2.2	30	100	0	130	29	0	7	63	1.22
1654767--1654804	19	2.0	19	94	0	67	31	2	28	36	1.71
1657200--1657437	118	2.0	118	100	0	476	28	23	15	32	1.95
1661652--1661865	107	2.0	107	100	0	428	30	22	14	32	1.93
1666274--1666362	11	7.9	11	78	7	90	5	4	43	46	1.47
1666275--1666363	33	2.6	33	83	3	106	6	4	42	46	1.50
1668223--1668265	22	2.0	22	86	9	61	23	4	4	67	1.28
1668510--1668603	45	2.1	45	84	4	118	20	13	17	48	1.80
1669603--1669658	20	2.8	20	97	0	103	37	8	26	26	1.86
1669606--1669671	20	3.6	18	90	8	73	37	9	27	25	1.86
1670632--1670690	2	30.0	2	86	3	84	50	1	1	45	1.21
1680837--1680993	66	2.4	67	90	2	244	32	12	14	41	1.82
1681147--1681582	130	3.4	129	79	2	426	27	30	17	25	1.97
1681144--1681697	130	4.2	131	78	4	393	26	30	16	26	1.97
1681860--1681913	3	17.3	3	77	7	54	33	1	1	62	1.16
1684538--1684642	54	1.9	55	86	1	149	36	18	14	31	1.90
1685162--1685209	12	4.0	12	91	0	78	2	33	6	58	1.35
1688413--1688636	110	2.0	111	98	0	432	39	12	13	35	1.82
1689298--1689371	38	2.0	37	97	2	139	22	16	18	41	1.89
1689324--1689533	79	2.7	79	91	4	334	24	19	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689482--1689564	36	2.2	38	93	4	143	24	20	19	36	1.95
1689617--1689765	41	3.6	41	76	8	140	31	21	22	24	1.98
1689669--1689802	41	3.3	42	76	11	147	30	22	23	23	1.99
1689628--1689807	83	2.2	79	88	6	256	31	21	22	25	1.98
1689921--1690105	42	4.5	41	76	8	176	29	22	21	26	1.99
1689921--1690105	83	2.2	83	94	0	325	29	22	21	26	1.99
1690251--1690479	36	6.4	36	78	9	229	23	19	21	35	1.96
1690251--1690477	71	3.2	70	81	7	242	23	19	21	35	1.96
1690251--1690477	107	2.1	107	84	7	291	23	19	21	35	1.96
1691221--1691525	125	2.4	125	86	0	430	23	27	16	33	1.95
1691932--1692664	361	2.0	366	97	2	1388	30	16	15	36	1.91
1709868--1709971	51	2.0	51	92	0	172	33	23	19	24	1.97
1718665--1718716	20	2.6	20	93	0	86	26	11	13	48	1.77
1722937--1722980	18	2.5	18	88	3	63	25	4	0	70	1.06
1723088--1723116	10	2.9	10	100	0	58	10	0	6	82	0.83
1724197--1724265	30	2.3	31	78	12	72	39	7	21	31	1.81
1725806--1725951	40	3.7	39	90	6	213	24	17	26	32	1.97
1730231--1730315	32	2.6	31	81	3	89	28	15	24	31	1.95
1731048--1731442	201	2.0	199	82	3	479	33	19	20	26	1.97
1732245--1732294	18	2.7	19	87	9	77	26	4	0	70	1.05
1732349--1732396	15	3.1	15	96	3	87	12	6	6	75	1.19
1732330--1732432	5	20.4	5	68	13	50	14	7	4	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1738403--1738481	27	2.9	27	92	0	131	31	22	22	22	1.98
1751128--1751157	15	2.0	15	93	0	51	70	0	13	16	1.18
1753466--1753518	24	2.2	24	83	9	65	22	18	20	37	1.94
1755015--1755063	25	2.0	25	95	0	89	42	22	4	30	1.72
1755140--1755188	23	2.1	23	100	0	98	12	8	36	42	1.72
1756013--1756097	42	2.0	42	100	0	170	25	14	20	40	1.90
1763453--1763520	20	3.5	20	64	20	54	25	16	17	41	1.89
1763404--1763858	194	2.4	193	87	3	655	31	17	15	36	1.90
1763411--1763858	39	11.6	39	85	1	580	31	17	15	36	1.91
1764077--1764197	63	1.9	63	81	6	147	39	12	17	30	1.86
1764138--1764400	115	2.2	116	84	5	334	42	13	19	24	1.88
1765567--1765664	29	3.3	29	76	12	83	22	7	2	68	1.25
1765885--1765941	28	2.0	28	96	0	105	17	8	10	63	1.51
1766164--1766189	2	13.0	2	100	0	52	50	0	0	50	1.00
1766611--1766639	8	3.6	8	100	0	58	44	27	13	13	1.82
1767419--1767468	18	2.8	18	100	0	100	40	6	6	48	1.52
1767548--1767577	15	1.9	15	93	6	51	26	0	6	66	1.16
1768541--1768626	21	4.2	20	73	18	86	39	2	1	56	1.19
1769834--1769902	30	2.4	27	73	15	66	46	1	4	47	1.31
1770080--1770116	19	2.0	19	89	5	58	51	0	0	48	1.00
1771935--1772035	32	3.2	31	77	4	94	29	18	27	23	1.98
1772010--1772095	32	2.7	32	100	0	172	24	27	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775615--1775686	24	3.0	24	81	2	83	26	1	27	44	1.63
1779010--1779085	31	2.5	31	89	4	109	22	3	11	61	1.46
1779091--1779124	13	2.8	12	86	8	50	20	0	5	73	1.04
1779347--1779391	9	5.0	9	84	15	58	55	15	6	22	1.63
1779987--1780023	6	6.2	6	87	0	56	59	2	2	35	1.26
1780812--1781114	159	1.9	160	82	3	378	32	18	17	31	1.94
1781425--1781653	24	9.5	24	88	2	273	45	27	0	26	1.59
1781841--1781903	25	2.5	25	89	0	99	57	25	0	17	1.40
1781900--1781954	24	2.3	24	80	0	65	49	27	0	23	1.51
1782668--1782934	129	2.0	132	97	2	504	39	8	7	43	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18