genome.fa.s8719.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008719.1 Hibiscus syriacus cultivar Beakdansim tig00111774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4817204

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  9  of  18  ( 2140 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2229637--2229679	22	2.0	21	86	8	61	39	11	11	37	1.78
2235950--2236058	24	4.5	24	71	8	87	21	13	15	49	1.79
2240167--2240232	19	3.5	19	100	0	132	33	19	4	42	1.72
2242119--2242146	14	2.0	14	100	0	56	28	7	21	42	1.79
2244929--2245076	67	2.2	67	87	1	206	31	20	16	31	1.95
2247150--2247206	22	2.6	23	83	10	66	54	3	1	40	1.28
2247152--2247253	22	4.5	22	71	11	64	50	2	0	45	1.23
2247123--2247236	54	2.2	51	80	13	126	53	3	1	41	1.28
2252650--2252684	15	2.3	15	90	0	52	40	8	2	48	1.49
2257452--2257486	17	2.1	17	100	0	70	22	17	17	42	1.88
2258021--2258052	2	16.0	2	100	0	64	50	0	0	50	1.00
2258507--2258613	42	2.5	42	84	3	135	28	14	15	42	1.86
2259212--2259297	36	2.4	36	100	0	172	36	16	12	34	1.87
2259462--2259495	15	2.3	15	100	0	68	17	17	26	38	1.92
2260739--2260772	16	2.1	16	89	10	52	47	0	2	50	1.16
2266311--2266351	21	1.9	22	85	5	57	43	9	41	4	1.59
2266764--2266983	85	2.6	86	85	2	300	28	21	16	34	1.95
2266755--2267028	45	6.3	44	76	7	265	27	20	16	34	1.95
2266774--2267065	130	2.3	124	78	9	286	27	22	16	33	1.95
2267257--2267281	2	12.5	2	100	0	50	52	0	0	48	1.00
2277617--2277666	21	2.4	21	100	0	100	26	22	24	28	1.99
2282370--2282421	22	2.3	22	78	21	63	28	15	9	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2283248--2283280	7	4.7	7	100	0	66	27	15	12	45	1.81
2284248--2284558	155	2.0	155	96	3	581	35	16	21	27	1.94
2284538--2284577	15	2.7	15	96	0	71	27	10	15	47	1.77
2289282--2289327	3	15.3	3	86	8	51	63	0	0	36	0.95
2289688--2289862	91	1.9	92	91	3	291	24	21	14	40	1.90
2289447--2290103	332	2.0	331	90	3	1027	24	20	16	38	1.93
2290441--2290482	15	2.8	15	88	0	66	28	26	23	21	1.99
2290528--2290585	15	4.0	15	75	8	57	37	13	18	29	1.90
2290567--2290642	36	2.1	36	85	0	98	44	11	21	22	1.84
2290649--2290731	37	2.2	38	91	2	132	38	13	19	28	1.89
2293489--2293560	9	7.9	9	83	13	58	4	16	0	79	0.89
2293517--2293562	11	4.4	11	91	8	78	0	13	0	86	0.56
2293515--2293562	21	2.3	21	92	3	80	0	14	0	85	0.60
2293504--2293562	9	6.1	9	90	7	73	0	15	0	84	0.62
2295912--2295941	13	2.3	13	100	0	60	30	30	0	40	1.57
2297290--2297325	13	2.8	13	95	4	65	55	5	0	38	1.23
2299788--2299834	3	15.3	3	91	8	53	63	0	0	36	0.94
2300120--2300145	4	6.5	4	100	0	52	23	0	0	76	0.78
2312276--2312478	94	2.2	94	96	0	370	39	16	18	25	1.91
2312445--2312514	35	2.0	35	88	2	104	38	15	21	24	1.92
2312453--2312550	35	2.8	34	78	9	99	36	17	22	23	1.94
2314747--2314806	28	2.1	28	100	0	120	43	15	18	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2317147--2317238	3	29.3	3	75	16	80	63	0	2	34	1.07
2318432--2318462	16	1.9	16	100	0	62	25	6	19	48	1.72
2319197--2319234	14	2.7	14	95	0	67	31	21	13	34	1.91
2320112--2320207	31	3.1	31	95	0	174	35	22	15	26	1.94
2327419--2327501	21	3.9	21	78	7	71	24	33	25	16	1.96
2329478--2329511	17	2.0	17	88	0	50	14	0	32	52	1.42
2330125--2330164	22	1.9	20	85	10	53	20	42	25	12	1.86
2331875--2332022	74	2.0	74	94	0	260	28	19	16	35	1.93
2332754--2333227	182	2.6	182	90	0	725	43	13	16	26	1.85
2333148--2333194	20	2.4	19	82	10	67	53	10	17	19	1.72
2333157--2333199	20	2.3	19	88	11	63	51	11	16	20	1.75
2335451--2335491	21	2.0	21	95	0	73	41	12	24	21	1.87
2338254--2339818	182	8.6	182	94	1	2682	41	13	17	27	1.87
2338254--2339818	543	2.9	543	95	0	2790	41	13	17	27	1.87
2338254--2339818	725	2.2	724	93	1	2701	41	13	17	27	1.87
2339954--2340115	86	1.9	87	94	1	290	33	14	11	41	1.81
2340037--2340081	23	2.0	23	86	0	63	37	15	8	37	1.79
2340138--2340182	16	2.8	16	96	0	81	24	26	11	37	1.89
2345716--2345751	16	2.2	17	95	5	65	36	19	8	36	1.82
2352102--2352163	3	20.0	3	85	12	81	67	1	0	30	1.00
2352366--2352686	132	2.4	133	83	4	412	25	18	29	25	1.98
2352636--2352826	40	4.7	40	71	10	127	27	18	30	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2352603--2352789	84	2.2	83	82	0	239	26	18	30	24	1.98
2353184--2353272	38	2.3	38	84	0	115	34	14	10	40	1.80
2353570--2353694	32	3.9	32	71	10	110	43	12	16	27	1.85
2353639--2353713	31	2.4	30	82	8	80	40	14	16	29	1.88
2354107--2354248	66	2.1	66	81	15	166	40	7	17	33	1.78
2356371--2356411	18	2.3	18	95	0	73	0	29	24	46	1.53
2357480--2357518	14	2.7	15	80	11	55	46	5	15	33	1.68
2357980--2358071	23	4.0	23	73	12	80	20	25	29	25	1.99
2357982--2358071	22	3.9	22	72	13	65	20	25	28	25	1.99
2358393--2358433	21	1.9	22	85	5	57	43	12	12	31	1.79
2361872--2361915	20	2.2	20	84	8	54	38	2	2	56	1.24
2363834--2363880	24	2.0	25	87	8	71	10	21	48	19	1.78
2364419--2364782	4	91.0	4	98	0	701	25	0	24	49	1.50
2364980--2365042	33	1.9	31	81	9	72	31	25	12	30	1.93
2366096--2366140	17	2.6	18	86	10	67	0	11	11	77	0.99
2366096--2366153	18	3.5	17	80	11	59	1	10	10	77	1.06
2366096--2366159	11	5.4	11	72	26	51	1	9	9	79	1.00
2366096--2366165	15	4.4	15	75	12	68	1	10	10	78	1.03
2371945--2372150	3	66.3	3	71	18	104	62	3	3	30	1.29
2371933--2372193	132	2.0	135	89	2	411	60	4	5	29	1.38
2376989--2377186	98	2.0	99	99	1	389	36	20	13	29	1.91
2383164--2383210	21	2.2	21	84	0	58	36	14	12	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2383276--2383332	15	3.8	15	90	0	87	21	28	0	50	1.48
2387736--2387869	67	2.0	67	100	0	268	40	26	8	23	1.84
2391225--2391344	60	2.0	60	100	0	240	48	13	13	25	1.78
2391934--2391980	12	3.9	12	75	10	51	51	19	14	14	1.77
2391939--2391985	24	2.0	23	88	12	69	55	17	12	14	1.70
2399747--2401271	761	2.0	761	97	0	2870	31	24	18	25	1.97
2402677--2402727	18	2.8	18	81	0	75	29	21	29	19	1.98
2408579--2408631	21	2.6	21	81	3	63	39	16	16	26	1.91
2435233--2435279	22	2.1	22	88	7	69	68	0	21	10	1.20
2443297--2443372	21	3.7	21	87	10	120	21	40	18	19	1.91
2443297--2443414	20	5.7	20	80	12	121	22	35	19	22	1.96
2444878--2444907	9	3.3	9	95	0	51	66	0	26	6	1.16
2446548--2446606	21	3.0	19	85	9	82	33	10	5	50	1.58
2446830--2446906	21	3.7	21	87	0	118	23	38	16	20	1.92
2446830--2446948	21	5.6	21	75	11	93	23	36	17	22	1.95
2446830--2446948	42	2.8	42	87	3	141	23	36	17	22	1.95
2455276--2455315	21	1.9	21	90	10	64	32	25	12	30	1.92
2455986--2456048	11	5.2	11	74	20	54	15	12	19	52	1.74
2455990--2456022	17	1.9	17	100	0	66	18	15	12	54	1.71
2455988--2456047	22	3.0	22	81	16	76	16	13	18	51	1.76
2463938--2464027	28	3.2	28	95	0	153	23	20	14	42	1.88
2467322--2467473	74	2.0	75	89	6	236	28	11	13	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2473104--2473129	3	8.7	3	100	0	52	34	0	0	65	0.93
2474057--2474081	6	4.2	6	100	0	50	36	48	16	0	1.46
2474079--2474127	5	9.8	5	93	0	62	20	34	40	4	1.71
2479801--2479831	6	5.2	6	100	0	62	35	48	16	0	1.46
2480242--2480421	3	57.7	3	72	14	116	35	2	5	57	1.35
2484740--2484802	2	31.5	2	100	0	126	49	0	0	50	1.00
2485301--2485615	55	5.7	55	87	1	454	35	16	16	31	1.91
2485915--2485984	20	3.5	20	77	11	72	20	27	14	38	1.91
2488620--2488955	79	4.3	80	85	4	425	27	22	13	36	1.92
2489446--2489501	22	2.7	20	81	10	67	28	25	16	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18