genome.fa.s8796.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008796.1 Hibiscus syriacus cultivar Beakdansim tig00111941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1607457

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266637--266702	12	5.6	12	71	8	55	15	12	19	53	1.73
278634--278677	6	7.3	6	100	0	88	15	0	34	50	1.45
278634--278690	12	4.8	12	93	4	57	12	3	33	50	1.57
284443--284477	17	2.1	17	100	0	70	37	11	22	28	1.89
286469--286535	33	2.0	33	97	0	125	34	5	44	14	1.70
295950--295984	17	2.1	17	94	0	61	22	5	14	57	1.59
305303--305337	17	2.1	16	89	5	52	31	20	8	40	1.82
310879--310905	2	13.5	2	100	0	54	48	0	0	51	1.00
311124--311186	33	2.0	31	81	12	74	36	14	9	39	1.78
312055--312098	22	2.0	22	86	4	61	40	25	6	27	1.80
312544--312701	60	2.6	60	81	5	158	38	18	1	40	1.62
316132--316191	28	2.1	28	87	6	86	58	11	5	25	1.53
319017--319107	44	2.1	44	100	0	182	21	20	27	29	1.98
323744--323786	18	2.6	18	82	10	56	30	0	2	67	1.03
328677--328719	21	2.0	21	90	0	68	32	27	23	16	1.96
328747--328784	20	1.9	20	94	0	67	23	31	31	13	1.93
329262--329578	103	3.1	103	98	0	607	26	12	24	36	1.91
329599--329650	23	2.3	23	89	0	77	21	30	25	23	1.99
329598--329661	23	2.8	23	76	4	76	21	26	25	26	2.00
336592--336664	37	2.0	37	86	5	103	26	20	27	26	1.99
360816--360934	21	5.6	21	72	12	73	41	14	10	34	1.79
360836--360873	19	2.1	19	85	5	51	47	5	10	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363297--363353	30	1.9	30	85	0	78	28	17	8	45	1.78
366299--366336	20	1.9	20	88	0	58	21	26	10	42	1.85
367216--367318	29	3.5	29	67	10	82	33	16	16	33	1.91
367170--367325	60	2.6	60	88	2	233	37	17	12	32	1.88
367170--367352	60	3.1	60	82	7	223	37	16	13	32	1.88
369870--369945	31	2.5	31	82	8	93	35	7	14	42	1.75
374729--374808	11	7.7	10	74	13	54	46	6	0	47	1.27
374730--374808	32	2.5	32	78	11	92	46	6	0	46	1.28
381568--381605	14	2.7	14	88	8	51	39	2	0	57	1.12
390099--390148	2	25.5	2	95	4	93	50	0	0	50	1.00
392695--392732	18	2.1	18	90	9	60	50	18	2	28	1.61
395833--395859	2	13.5	2	100	0	54	51	0	0	48	1.00
400698--400750	21	2.5	21	82	11	63	22	0	7	69	1.13
414380--414423	14	3.2	13	78	9	52	36	9	0	54	1.32
414379--414443	28	2.3	28	81	7	78	43	7	0	49	1.31
415015--415059	2	22.5	2	100	0	90	51	0	0	48	1.00
418019--418051	13	2.5	13	95	5	57	36	15	27	21	1.93
421548--421596	25	2.0	23	81	14	55	48	4	0	46	1.20
421548--421597	26	2.0	26	84	4	66	50	4	0	46	1.20
426615--426825	110	1.9	112	82	7	268	26	15	18	39	1.91
428023--428073	4	12.8	4	91	0	66	47	27	3	21	1.68
429573--429621	24	2.0	24	84	7	64	32	2	2	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429821--429934	60	1.9	60	83	3	149	31	15	14	37	1.89
436883--437033	60	2.5	60	82	3	169	35	13	15	34	1.88
437381--437494	60	1.9	60	88	0	174	38	13	14	33	1.85
438492--438621	59	2.2	59	80	10	140	33	20	13	33	1.92
438514--438627	60	1.9	60	85	5	160	30	19	14	35	1.92
442665--442709	21	2.1	21	84	8	56	35	11	4	48	1.59
448552--448595	2	22.0	2	95	0	79	52	0	0	47	1.00
450609--450644	15	2.4	15	95	0	63	36	5	25	33	1.79
450910--451010	42	2.4	42	88	0	139	18	16	37	26	1.93
450906--450979	24	3.3	24	67	27	72	21	20	36	21	1.95
452535--452562	6	4.7	6	100	0	56	35	17	14	32	1.90
455993--456121	64	2.0	64	100	0	258	31	17	24	27	1.97
465154--465179	3	8.7	3	100	0	52	69	0	0	30	0.89
468417--468517	42	2.4	42	88	0	139	18	16	37	26	1.93
468402--468486	24	3.8	24	68	23	76	21	20	36	22	1.95
473168--473296	64	2.0	64	100	0	258	31	17	24	27	1.97
481343--481368	3	8.7	3	100	0	52	34	0	0	65	0.93
481461--481495	3	11.7	3	100	0	70	68	0	0	31	0.90
482392--482425	2	17.0	2	100	0	68	50	0	0	50	1.00
489091--489275	97	1.9	100	81	10	229	37	21	12	28	1.89
502374--502420	8	6.1	8	87	5	53	12	4	6	76	1.12
511704--511748	17	2.6	17	75	0	54	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514931--514984	2	27.0	2	100	0	108	50	0	0	50	1.00
515050--515090	2	20.5	2	94	0	73	48	2	0	48	1.14
515483--515550	23	3.0	23	84	0	91	17	23	26	32	1.97
517713--517749	13	2.8	13	91	0	56	24	0	0	75	0.80
517996--518043	8	6.0	8	80	0	51	72	2	0	25	0.95
517996--518043	16	3.0	16	90	0	69	72	2	0	25	0.95
518576--518604	2	14.5	2	100	0	58	48	0	0	51	1.00
520146--520229	38	2.3	36	80	15	100	47	8	13	30	1.72
526977--527008	15	2.1	15	100	0	64	43	18	6	31	1.75
527609--527653	18	2.5	18	81	0	54	24	22	13	40	1.90
527782--528327	188	2.9	185	84	4	641	32	14	14	38	1.86
544530--544706	60	3.0	59	82	6	209	31	23	5	40	1.76
546693--547344	341	1.9	343	82	5	827	39	13	10	36	1.80
548719--548850	29	4.6	29	84	3	158	24	6	23	45	1.77
548807--548873	29	2.3	29	89	0	98	26	5	22	44	1.75
551393--551422	14	2.1	14	93	0	51	10	13	20	56	1.65
551531--551586	29	1.9	29	88	0	85	33	10	23	32	1.89
552299--552644	165	2.1	170	85	4	463	23	17	14	45	1.84
560994--561106	59	1.9	60	83	5	149	36	15	15	33	1.88
561904--562087	60	3.1	59	77	3	181	33	20	6	40	1.78
564754--564816	31	2.0	31	90	0	99	30	6	4	58	1.43
570890--570921	13	2.5	13	100	0	64	46	6	0	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580739--580784	21	2.2	21	92	0	74	39	21	34	4	1.73
584075--584273	93	2.1	93	85	5	256	19	21	13	45	1.84
584199--584263	34	1.9	34	83	0	85	20	20	13	46	1.84
601109--601493	186	2.1	183	89	6	600	46	8	2	42	1.48
601429--601472	21	2.1	21	91	4	72	43	0	0	56	0.99
604123--604150	14	2.0	14	100	0	56	35	7	14	42	1.73
619419--619453	15	2.4	15	90	4	54	77	2	8	11	1.10
632293--632330	18	2.2	18	85	4	51	76	5	13	5	1.13
632317--632382	25	2.9	23	82	14	68	72	0	21	6	1.05
633566--634359	55	15.0	53	91	3	774	28	16	26	28	1.97
636922--636964	13	3.2	13	76	3	50	55	6	4	32	1.47
644756--644897	71	2.0	71	100	0	284	38	11	9	40	1.74
644986--645060	31	2.4	31	95	0	132	30	8	12	49	1.68
645215--645284	27	2.5	28	80	13	83	61	0	2	35	1.11
648516--648573	14	4.4	14	75	16	52	56	13	15	13	1.67
654073--654121	18	2.7	18	87	9	64	59	8	20	12	1.58
656596--656622	9	3.0	9	100	0	54	11	33	22	33	1.89
661214--661261	19	2.5	20	80	16	57	54	0	2	43	1.12
665071--665095	2	12.5	2	100	0	50	52	0	0	48	1.00
665257--665303	13	3.6	13	82	0	67	34	21	17	27	1.95
674760--674814	17	3.1	17	78	14	56	34	14	9	41	1.77
674760--674816	20	3.0	20	85	7	75	35	15	8	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
683771--683836	31	2.1	31	97	0	123	21	13	13	51	1.75
684811--684906	43	2.2	42	88	3	138	28	16	7	47	1.73
684811--685046	42	5.6	42	76	13	168	27	19	5	46	1.73
684850--685032	84	2.2	84	81	9	205	28	21	6	44	1.76
685249--685293	24	1.9	23	82	13	56	22	13	4	60	1.51
686672--686722	24	2.2	24	82	10	61	23	9	1	64	1.34
687488--687537	25	2.0	25	84	4	64	42	6	4	48	1.46
688096--688121	13	2.0	13	100	0	52	38	0	0	61	0.96
688295--688332	20	1.9	20	94	0	67	44	0	2	52	1.14
688403--688435	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7