genome.fa.s8796.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008796.1 Hibiscus syriacus cultivar Beakdansim tig00111941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1607457

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691749--691788	18	2.2	18	86	0	53	20	2	12	65	1.38
692089--692226	21	6.7	21	71	6	77	37	24	17	20	1.93
692193--692462	20	13.5	20	81	6	269	37	25	17	20	1.94
693143--693189	24	2.0	24	87	8	69	25	14	21	38	1.92
693364--693388	12	2.1	12	100	0	50	72	0	28	0	0.86
695667--695935	19	15.4	19	77	18	300	46	18	21	13	1.83
695667--695957	33	8.5	33	80	15	244	46	18	22	13	1.83
695695--695957	52	5.0	52	99	0	517	46	17	23	13	1.83
695964--696079	53	2.2	53	98	1	225	13	24	18	43	1.86
695982--696079	19	5.4	19	84	13	143	14	22	17	45	1.84
696186--696222	14	2.6	14	91	0	65	45	21	0	32	1.52
698144--698242	19	5.4	19	77	12	91	45	26	18	10	1.80
698181--698259	33	2.4	33	95	0	140	45	22	21	10	1.81
698200--698254	14	3.6	14	76	21	56	47	23	20	9	1.78
699296--699385	14	5.7	14	69	23	63	45	22	23	8	1.80
699288--699402	33	3.5	33	97	0	221	47	20	22	9	1.78
699310--699407	19	5.7	19	69	22	90	45	21	22	10	1.81
699403--699461	19	3.4	18	73	22	54	8	18	25	47	1.77
699419--699475	14	3.7	14	77	20	60	8	22	22	45	1.80
699403--699483	33	2.5	33	93	0	135	8	20	22	48	1.77
699459--699536	41	1.9	41	97	0	147	12	25	16	44	1.83
699460--699535	21	3.7	21	83	3	109	11	25	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699615--699685	33	2.2	33	92	0	115	47	18	22	11	1.80
699867--699921	22	2.5	22	81	0	74	20	16	40	23	1.91
700068--700221	20	7.7	20	80	7	159	18	18	25	37	1.94
700067--700221	40	3.8	40	81	4	177	18	18	25	37	1.93
705243--705270	14	2.0	14	100	0	56	50	14	21	14	1.78
707221--707321	51	2.0	51	96	0	184	34	11	21	31	1.90
709081--709108	14	2.0	14	100	0	56	50	14	21	14	1.78
713078--713114	14	2.6	15	87	8	51	27	0	2	70	1.01
714051--714097	12	3.7	12	88	8	58	27	2	0	70	0.99
714044--714115	26	2.5	28	72	20	69	27	4	1	66	1.18
716141--716204	23	2.8	23	80	4	76	18	18	18	43	1.88
716570--716600	16	1.9	16	93	0	53	41	32	12	12	1.81
717888--717952	31	2.1	32	91	2	105	16	3	23	56	1.54
717998--718050	26	2.0	27	85	3	72	18	1	20	58	1.49
718923--719188	83	3.2	82	80	4	295	30	18	16	35	1.93
719198--719436	82	2.9	82	84	3	302	31	18	16	32	1.94
719006--719406	220	1.8	221	85	3	576	30	19	16	33	1.94
719567--719625	30	2.0	29	87	9	84	37	6	15	40	1.74
719689--719750	19	3.3	19	90	0	88	38	11	12	37	1.80
719856--719897	21	2.0	21	95	0	75	23	21	28	26	1.99
719926--719965	20	1.9	21	85	10	55	37	37	10	15	1.80
721390--721597	65	3.2	63	78	12	208	31	25	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721829--721854	7	3.7	7	100	0	52	57	15	15	11	1.65
727371--727448	23	3.5	22	77	12	79	25	23	24	26	2.00
730240--730346	56	1.9	56	83	9	137	33	20	15	29	1.94
731480--733131	330	5.0	330	96	0	3065	35	18	16	29	1.93
738506--738557	20	2.5	21	81	3	61	40	19	23	17	1.91
738546--738659	20	5.7	20	83	6	113	31	25	18	24	1.97
738543--738659	61	1.9	61	85	0	162	33	24	17	23	1.97
739215--739256	19	2.2	19	91	0	66	52	26	16	4	1.63
739252--739302	19	2.7	19	90	0	84	13	19	19	47	1.83
739297--739329	14	2.4	14	100	0	66	9	33	24	33	1.87
739311--739386	33	2.3	34	93	2	127	13	27	22	36	1.91
739295--739362	14	4.5	14	76	16	64	10	27	23	38	1.87
739351--739411	20	3.1	19	76	17	61	14	24	16	44	1.85
741461--741527	21	3.2	21	66	6	55	23	35	20	19	1.95
741409--741527	42	2.8	42	81	5	107	22	36	18	22	1.95
742871--742906	14	2.6	14	95	0	63	30	0	25	44	1.54
743069--743228	33	4.8	33	90	3	250	15	23	18	43	1.88
743154--743210	14	3.7	14	75	20	60	15	24	15	43	1.86
745517--745541	12	2.1	12	100	0	50	0	28	0	72	0.86
745716--745769	24	2.2	24	90	0	81	38	20	16	24	1.92
746827--746884	20	2.9	20	97	0	107	37	24	22	15	1.93
746907--746980	19	4.5	16	83	16	66	13	20	18	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746903--746970	19	3.8	19	87	12	101	13	22	17	47	1.82
747087--747123	14	2.6	14	86	0	56	48	21	0	29	1.50
748990--749057	20	3.5	19	74	6	64	39	22	22	16	1.92
749046--749103	14	3.9	14	79	16	71	48	25	17	8	1.75
749038--749108	32	2.2	33	94	2	126	47	22	19	9	1.78
749137--749194	14	3.9	14	72	16	53	12	15	22	50	1.77
749120--749210	32	2.8	33	88	3	139	13	16	20	49	1.79
749204--749249	20	2.3	20	88	0	65	15	21	26	36	1.93
749730--749769	18	2.2	18	90	0	62	12	17	45	25	1.83
751090--751132	20	2.2	20	86	0	59	48	20	18	11	1.79
751100--751168	20	3.5	20	93	0	111	34	26	18	20	1.96
751424--751472	22	2.3	21	80	10	55	24	14	40	20	1.89
751431--751474	22	2.0	22	90	0	70	20	15	43	20	1.88
751662--751755	20	4.7	20	80	7	91	23	18	25	32	1.97
751642--751756	20	5.7	19	78	9	86	23	17	24	34	1.96
751745--751837	20	4.5	21	78	4	100	17	24	18	39	1.91
751684--751818	41	3.3	41	82	4	139	19	21	21	37	1.94
751745--751837	41	2.3	41	100	0	186	17	24	18	39	1.91
752578--752622	20	2.2	20	84	4	54	37	13	24	24	1.91
753055--753086	2	16.0	2	100	0	64	50	0	0	50	1.00
755585--755618	9	3.7	9	84	7	50	17	5	0	76	0.98
755652--755690	2	19.5	2	94	0	69	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757070--757104	10	3.4	10	92	4	52	20	2	0	77	0.90
767160--767202	5	9.0	5	87	10	63	86	13	0	0	0.58
767161--767202	14	3.0	14	93	6	68	85	14	0	0	0.59
767159--767202	19	2.4	19	96	3	81	86	13	0	0	0.57
767419--768274	105	8.3	105	90	6	1310	33	25	18	22	1.96
767639--767794	43	3.4	43	69	13	141	34	25	18	21	1.96
767419--768274	199	4.2	200	88	8	1153	33	25	18	22	1.96
767424--768274	304	2.8	304	95	1	1490	33	25	18	22	1.96
767943--768098	43	3.4	43	68	13	132	35	25	17	21	1.95
769862--769895	9	3.7	9	84	7	50	17	5	0	76	0.98
769929--769985	2	28.5	2	96	0	105	49	1	0	49	1.11
795216--795253	20	1.9	20	88	0	58	34	18	21	26	1.96
796204--796267	30	2.2	29	82	2	74	37	25	25	12	1.91
798236--798316	42	2.0	41	86	11	114	35	24	8	30	1.86
800283--800332	18	2.6	20	84	6	68	26	20	28	26	1.99
811027--811076	10	5.1	10	85	11	68	36	2	0	62	1.07
811045--811086	19	2.2	19	83	8	50	38	4	0	57	1.20
811206--811328	25	4.9	25	100	0	246	39	20	16	24	1.92
812656--812710	2	28.5	2	92	7	96	47	0	0	52	1.00
824670--824705	11	3.3	11	100	0	72	83	0	8	8	0.82
825670--825773	44	2.4	44	100	0	208	26	29	22	21	1.99
825705--825776	24	3.2	24	60	28	57	27	33	20	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825714--826001	134	2.2	130	85	6	395	26	28	20	24	1.99
826197--826246	10	5.1	10	85	11	68	36	2	0	62	1.07
826215--826256	19	2.2	19	83	8	50	38	4	0	57	1.20
826376--826523	25	5.9	25	96	0	278	39	18	16	25	1.91
827874--827900	2	13.5	2	100	0	54	48	0	0	51	1.00
832804--832869	20	3.3	20	91	0	105	31	18	22	27	1.97
833037--833077	16	2.6	16	92	3	66	29	19	12	39	1.88
837306--837342	18	2.1	18	100	0	74	37	5	27	29	1.79
843810--843870	28	2.1	29	87	3	88	37	3	9	49	1.52
845634--845668	17	2.1	17	94	0	61	31	0	5	62	1.18

Tables:   1   2   3   4   5   6   7