genome.fa.s8796.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008796.1 Hibiscus syriacus cultivar Beakdansim tig00111941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1607457

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171872--1171900	2	14.5	2	100	0	58	48	0	0	51	1.00
1173355--1173497	61	2.3	62	85	2	189	36	11	14	37	1.82
1173844--1173871	2	14.0	2	100	0	56	50	0	0	50	1.00
1186688--1186735	21	2.3	22	78	10	55	64	4	2	29	1.23
1187415--1187477	30	2.1	30	82	2	74	26	4	3	65	1.28
1200847--1200880	3	11.3	3	93	0	59	32	0	2	64	1.08
1200896--1200926	16	1.9	16	93	0	53	35	0	12	51	1.40
1202227--1202377	60	2.5	59	85	1	194	32	21	6	39	1.80
1202221--1202320	29	3.4	29	68	15	78	34	23	5	38	1.76
1202553--1202669	60	2.0	60	81	6	139	37	5	23	34	1.77
1203106--1203131	2	13.0	2	100	0	52	50	0	0	50	1.00
1205312--1205405	45	2.1	45	100	0	188	41	6	19	32	1.76
1205706--1205817	51	2.2	51	79	6	120	47	11	5	35	1.63
1209181--1209210	4	7.5	4	100	0	60	76	0	0	23	0.78
1216161--1216233	24	3.0	24	89	0	83	13	35	17	32	1.89
1216178--1216233	24	2.3	24	100	0	112	14	35	21	28	1.92
1218581--1218627	23	2.0	23	87	0	67	23	12	12	51	1.74
1229620--1229705	35	2.5	34	86	3	120	30	18	24	26	1.98
1234152--1234197	20	2.3	20	81	7	58	54	0	4	41	1.20
1235958--1236007	12	4.4	12	75	12	52	40	0	2	58	1.10
1235966--1236007	21	1.9	23	85	9	61	38	0	2	59	1.10
1236130--1236202	32	2.2	35	82	7	89	52	0	2	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1236493--1236525	14	2.4	14	90	10	50	45	3	12	39	1.57
1236892--1236949	27	2.2	26	84	12	73	53	1	0	44	1.10
1236900--1236941	14	2.9	15	76	20	52	57	0	0	42	0.99
1237575--1237681	45	2.3	46	87	4	155	27	22	20	29	1.98
1243345--1243404	23	2.7	22	82	14	79	30	21	21	26	1.99
1245441--1245468	2	14.0	2	100	0	56	50	0	0	50	1.00
1246111--1246272	84	1.9	83	85	6	220	30	24	19	25	1.98
1246176--1246227	19	2.7	19	100	0	104	30	30	21	17	1.96
1248510--1248591	20	4.1	20	87	0	119	14	26	39	19	1.90
1249988--1250034	19	2.4	20	82	3	60	27	12	6	53	1.63
1250013--1250058	23	2.0	24	83	12	60	36	8	6	47	1.60
1251312--1251361	20	2.4	21	93	3	84	16	26	42	16	1.88
1251312--1251374	21	3.0	21	90	2	92	15	26	38	19	1.92
1259061--1259110	12	4.1	12	74	23	50	68	10	8	14	1.40
1268190--1268226	19	2.0	19	89	5	58	13	0	35	51	1.41
1270347--1270616	100	2.7	98	93	2	461	24	24	7	44	1.79
1274412--1274493	39	2.1	38	88	6	121	48	7	2	41	1.44
1276890--1276949	25	2.4	25	85	0	75	61	8	6	23	1.48
1279938--1279968	13	2.4	13	94	0	53	61	0	16	22	1.34
1281545--1281577	17	2.0	17	94	5	59	45	0	0	54	0.99
1281405--1281610	82	2.4	82	76	10	209	38	3	2	55	1.32
1281405--1281610	41	4.9	41	73	12	157	38	3	2	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1281634--1281769	40	3.4	40	77	15	154	54	2	3	39	1.30
1285493--1286438	3	313.7	3	81	3	813	0	54	0	44	1.02
1285490--1286737	6	208.8	6	80	8	729	0	51	0	47	1.02
1286087--1286751	3	223.0	3	76	6	440	0	45	0	54	1.03
1285679--1286751	9	120.7	9	79	10	778	0	49	0	49	1.02
1286751--1286895	74	2.0	74	97	0	272	28	21	22	26	1.99
1287688--1287783	3	29.3	3	84	14	111	60	0	39	0	0.97
1287688--1287783	7	14.6	7	91	8	134	60	0	39	0	0.97
1287688--1287783	47	2.1	45	90	7	149	60	0	39	0	0.97
1290010--1290073	23	2.8	24	83	4	69	50	1	3	45	1.27
1290132--1290173	19	2.2	19	83	8	50	57	4	0	38	1.20
1291399--1291466	27	2.5	27	81	9	68	41	1	1	55	1.18
1291412--1291495	13	6.2	13	73	10	69	42	1	1	54	1.15
1291380--1291495	42	2.9	42	76	14	118	43	0	1	54	1.16
1291442--1291499	29	2.0	29	89	0	89	44	1	1	51	1.21
1291630--1291733	42	2.7	37	77	21	122	46	1	0	50	1.18
1291700--1291796	14	7.1	14	66	11	58	44	1	1	53	1.14
1294153--1294200	20	2.4	20	79	6	53	20	0	4	75	0.97
1296591--1296999	203	2.0	203	91	3	671	43	6	8	41	1.60
1298886--1298932	25	2.0	25	87	8	71	14	8	4	72	1.24
1310359--1310388	8	3.8	8	100	0	60	46	0	0	53	1.00
1310554--1310579	11	2.4	11	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1310698--1310722	2	12.5	2	100	0	50	48	0	0	52	1.00
1311282--1311326	25	1.9	23	82	13	56	31	6	0	62	1.21
1313434--1313595	64	2.5	64	83	4	202	29	17	19	33	1.95
1317094--1317156	31	2.0	31	87	6	92	38	26	17	17	1.92
1317808--1317970	64	2.5	64	81	2	193	29	19	19	32	1.96
1328603--1328641	14	2.8	14	81	14	53	84	0	10	5	0.76
1330127--1330643	257	2.0	257	95	0	917	41	12	15	30	1.84
1330582--1330899	123	2.6	123	88	5	455	42	15	18	23	1.88
1330820--1331181	139	2.6	138	80	6	403	40	14	17	28	1.88
1332875--1332900	11	2.4	11	100	0	52	34	0	0	65	0.93
1333022--1333057	2	18.5	2	94	5	65	50	0	0	50	1.00
1335102--1335141	9	4.3	9	85	14	55	55	0	0	45	0.99
1335102--1335141	2	21.5	2	80	14	50	55	0	0	45	0.99
1335102--1335140	7	5.9	7	91	8	64	56	0	0	43	0.99
1335102--1335140	20	2.0	20	94	0	69	56	0	0	43	0.99
1336026--1336276	43	5.4	43	67	15	151	21	18	26	34	1.96
1336178--1336815	106	6.0	106	96	0	1114	22	18	25	33	1.97
1335953--1336815	318	2.8	311	90	6	1323	22	18	25	33	1.97
1336968--1337143	35	5.1	35	72	17	154	34	13	22	30	1.92
1336876--1337138	100	2.6	100	95	0	454	35	13	21	29	1.91
1337157--1337543	84	4.7	84	78	6	355	24	20	25	29	1.99
1342028--1342061	2	17.5	2	87	6	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1349480--1349510	14	2.2	14	100	0	62	25	0	0	74	0.82
1349641--1349680	20	2.0	20	95	0	71	30	7	20	42	1.79
1350147--1350211	33	2.0	34	87	6	98	60	6	6	27	1.45
1352034--1352110	37	2.1	37	85	4	102	49	1	2	46	1.23
1353649--1353743	35	2.7	35	87	6	122	43	27	2	27	1.66
1354225--1354509	148	2.0	140	88	5	426	48	9	6	35	1.62
1354680--1354759	35	2.3	35	91	4	126	33	1	22	42	1.62
1364178--1364211	2	17.0	2	100	0	68	50	0	0	50	1.00
1367498--1367610	20	5.5	21	78	5	72	30	20	16	31	1.95
1367554--1367653	20	4.9	20	79	7	112	43	19	17	21	1.89
1367555--1367653	41	2.4	41	83	5	112	43	18	17	21	1.88
1367560--1367673	61	1.9	59	82	8	140	40	20	16	22	1.91
1368206--1368250	19	2.4	19	92	0	72	46	26	17	8	1.78
1368246--1368371	19	7.1	19	70	18	92	12	22	20	44	1.85
1368251--1368343	33	2.8	33	95	0	159	11	21	23	43	1.86
1370014--1370192	86	2.0	87	88	6	261	22	11	18	46	1.81
1370463--1370529	21	3.2	21	66	6	55	23	37	19	19	1.94
1370436--1370529	42	2.2	42	81	7	102	22	35	20	22	1.96
1371860--1371895	14	2.6	14	95	0	63	30	0	25	44	1.54
1372000--1372058	19	3.4	19	73	22	74	45	18	18	16	1.85
1372000--1372073	33	2.2	33	95	0	130	45	18	18	16	1.85
1372000--1372065	19	3.7	19	73	19	61	46	18	19	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1372015--1372072	14	3.8	14	71	20	53	48	18	18	13	1.81
1372000--1372097	33	3.0	33	87	1	108	45	20	19	14	1.84
1372103--1372201	19	5.7	19	65	22	74	11	24	19	45	1.82
1372107--1372233	33	3.8	33	94	0	209	12	22	18	46	1.83
1372128--1372215	14	5.6	14	69	23	50	12	23	19	44	1.85
1375482--1375533	21	2.5	21	87	3	70	38	17	23	21	1.93
1375518--1375609	20	4.6	20	71	2	67	40	21	17	20	1.92
1375823--1375870	20	2.4	20	100	0	96	35	27	22	14	1.93
1375902--1375955	14	3.5	14	73	22	54	11	20	18	50	1.77
1375884--1375954	33	2.2	33	81	0	79	19	19	19	40	1.91

Tables:   1   2   3   4   5   6   7