genome.fa.s8796.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008796.1 Hibiscus syriacus cultivar Beakdansim tig00111941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1607457

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1377531--1377594	21	3.1	21	76	10	78	21	10	45	21	1.83
1377513--1377594	42	2.0	41	88	9	123	19	13	45	21	1.85
1377931--1377983	20	2.7	20	81	0	61	35	28	11	24	1.90
1377937--1378023	20	4.4	20	79	1	77	39	25	19	16	1.92
1377996--1378054	19	3.4	19	71	22	65	49	20	18	11	1.79
1378012--1378070	14	3.9	14	76	20	64	49	23	16	10	1.77
1377996--1378075	33	2.4	33	95	0	142	48	22	18	10	1.77
1378104--1378162	14	3.9	14	72	20	55	10	15	23	50	1.74
1378087--1378178	33	2.8	33	93	0	157	13	17	20	48	1.80
1378082--1378178	19	5.6	19	68	22	79	13	18	20	47	1.82
1378163--1378216	20	2.8	19	86	5	72	16	24	24	35	1.95
1378151--1378216	19	3.4	19	81	4	78	15	22	24	37	1.92
1378755--1378799	18	2.5	18	92	0	81	13	13	44	28	1.81
1380387--1380430	22	2.0	22	95	0	79	18	15	45	20	1.85
1380597--1380734	41	3.4	41	75	6	145	24	14	23	36	1.93
1380617--1380730	20	5.7	20	75	6	95	25	15	25	33	1.95
1380671--1380751	41	2.0	41	82	4	101	20	19	23	35	1.96
1380741--1380793	21	2.5	20	79	8	70	33	18	26	20	1.96
1381640--1381672	2	16.5	2	100	0	66	48	0	0	51	1.00
1383296--1383337	21	2.0	21	95	0	75	26	28	21	23	1.99
1383444--1383509	19	3.5	19	93	0	105	36	12	10	40	1.77
1383566--1383633	29	2.2	32	84	12	97	39	13	8	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402424--1402448	10	2.5	10	100	0	50	12	0	0	88	0.53
1405152--1405555	202	2.0	202	98	0	772	29	27	13	28	1.94
1411346--1411393	20	2.3	20	85	7	60	33	0	0	66	0.92
1411354--1411395	20	2.0	21	90	9	68	30	0	0	69	0.89
1411354--1411407	20	2.9	17	77	17	54	31	0	0	68	0.90
1411354--1411407	17	2.8	20	86	13	69	31	0	0	68	0.90
1411502--1411539	5	7.4	5	85	14	51	18	0	5	76	0.97
1423389--1423430	2	21.0	2	100	0	84	50	0	0	50	1.00
1425803--1425914	30	3.8	29	92	3	179	18	29	7	44	1.76
1427476--1427613	63	2.2	63	97	0	258	42	13	10	34	1.79
1427561--1427693	41	3.2	41	91	0	230	41	12	16	29	1.85
1433022--1433159	63	2.2	63	94	0	249	40	12	12	34	1.80
1433107--1433283	41	4.3	41	95	0	318	42	12	15	29	1.83
1439319--1439388	35	1.9	37	82	8	90	50	2	0	47	1.16
1444357--1444400	21	2.1	21	88	12	65	72	0	0	27	0.85
1460328--1460382	24	2.3	24	84	6	76	20	25	32	21	1.97
1473790--1473829	20	2.0	20	95	4	73	50	0	0	50	1.00
1474324--1474357	2	17.0	2	100	0	68	50	0	0	50	1.00
1474705--1474741	19	2.0	20	89	10	60	18	5	13	62	1.50
1482353--1482385	16	2.2	15	89	10	50	42	0	3	54	1.15
1494148--1494189	2	21.0	2	100	0	84	50	0	0	50	1.00
1498157--1498211	25	2.2	25	93	0	92	25	38	29	7	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1498666--1498708	22	2.0	22	86	9	61	9	9	13	67	1.42
1505520--1506313	396	2.0	397	95	0	1446	30	19	17	32	1.95
1509315--1509353	19	2.2	18	90	9	62	35	0	0	64	0.94
1509310--1509363	11	5.4	10	75	20	51	38	1	0	59	1.08
1509554--1509580	14	1.9	14	100	0	54	55	0	0	44	0.99
1512833--1512890	28	2.1	28	100	0	116	13	13	17	55	1.70
1512895--1513351	225	2.0	226	99	0	898	28	15	17	38	1.90
1516900--1517038	68	2.0	68	97	0	260	35	16	13	34	1.88
1519759--1519912	76	2.0	76	96	0	281	46	15	14	23	1.83
1521454--1521524	31	2.3	32	81	13	78	42	2	1	53	1.24
1521515--1521573	3	20.0	3	96	3	111	32	0	0	67	0.91
1523397--1523451	27	2.0	27	100	0	110	18	10	25	45	1.82
1525604--1525639	2	18.0	2	100	0	72	50	0	0	50	1.00
1526617--1526660	18	2.4	18	96	0	79	25	15	38	20	1.92
1532139--1532176	18	2.1	18	90	0	58	34	10	13	42	1.78
1532560--1532639	39	2.1	39	100	0	160	12	12	23	51	1.74
1533604--1533670	36	1.9	35	87	6	100	26	17	16	38	1.91
1538591--1538638	20	2.4	20	79	6	53	33	22	12	31	1.91
1541527--1541707	79	2.3	79	97	0	335	47	7	4	40	1.52
1543052--1543079	14	2.0	14	100	0	56	28	7	0	64	1.20
1544364--1544397	17	1.9	18	88	5	52	29	0	5	64	1.17
1544405--1544446	20	2.1	20	86	0	57	30	0	2	66	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544365--1544437	8	9.1	8	72	11	60	28	0	4	67	1.09
1544397--1544433	16	2.4	16	95	4	67	29	0	2	67	1.04
1544508--1544568	13	4.8	13	74	11	63	27	0	1	70	0.97
1544512--1544556	17	2.7	17	82	3	56	26	0	2	71	0.98
1544490--1544567	38	2.0	39	87	2	113	28	0	3	67	1.07
1544372--1544666	117	2.5	115	91	3	475	28	2	8	60	1.39
1544636--1544665	15	2.0	15	93	0	51	20	0	3	76	0.92
1545387--1545428	16	2.8	15	79	10	50	45	0	4	50	1.23
1555448--1555490	20	2.3	19	88	8	61	34	25	9	30	1.87
1557396--1557519	63	2.0	63	87	6	180	17	21	20	40	1.92
1560077--1560119	20	2.3	19	88	8	61	34	25	9	30	1.87
1567077--1567117	21	2.0	21	85	4	57	43	0	39	17	1.49
1578354--1578465	20	5.6	20	86	2	161	40	18	20	20	1.92
1578354--1578480	40	3.2	39	84	7	157	38	19	20	21	1.94
1578661--1578726	22	3.0	22	90	0	105	27	39	12	21	1.88
1579083--1579129	20	2.3	20	88	0	67	19	17	25	38	1.92
1581018--1581194	20	9.5	20	77	16	157	40	19	19	19	1.92
1581239--1581365	20	6.3	20	90	0	173	21	19	21	37	1.94
1581850--1581947	21	4.7	20	74	10	72	24	33	19	22	1.97
1581846--1581947	42	2.4	42	78	3	116	23	33	19	23	1.97
1583481--1583556	33	2.3	34	88	2	118	46	17	22	14	1.84
1583571--1583642	33	2.1	34	92	2	119	13	23	18	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583571--1583655	33	2.5	33	88	1	98	15	22	17	44	1.86
1583645--1583712	20	3.4	20	83	4	84	25	22	19	33	1.97
1586156--1586209	24	2.2	24	93	0	90	40	20	18	20	1.91
1587037--1587144	20	5.4	20	88	2	119	25	19	22	32	1.97
1587111--1587244	20	6.7	20	84	1	178	23	20	17	38	1.93
1587241--1587328	21	4.2	21	94	0	149	40	17	25	17	1.90
1587718--1587767	14	3.6	14	73	13	50	60	2	0	38	1.09
1590387--1590490	45	2.3	45	93	0	190	31	11	16	40	1.84
1595522--1595575	20	2.7	20	97	0	99	31	24	18	25	1.97
1596137--1596216	18	4.5	18	74	17	78	46	25	17	11	1.81
1596212--1596396	19	10.1	19	77	14	174	11	21	21	44	1.84
1596212--1596396	33	5.1	38	80	12	174	11	21	21	44	1.84
1596339--1596396	20	2.9	20	75	10	55	13	24	17	44	1.85
1598393--1598485	42	2.2	42	80	3	107	21	37	16	24	1.93
1599867--1599902	14	2.6	14	95	0	63	30	0	25	44	1.54
1600009--1600076	20	3.8	19	72	21	74	45	19	22	13	1.84
1600081--1600198	19	6.7	19	68	19	85	12	23	21	42	1.87
1600085--1600178	33	2.8	33	96	0	170	11	24	20	43	1.85
1600104--1600160	14	3.7	14	72	20	51	10	26	21	42	1.85
1602654--1602706	24	2.2	24	86	3	72	39	20	16	22	1.92
1603767--1603824	20	2.9	20	82	10	73	37	20	20	20	1.94
1603865--1603910	19	2.4	19	100	0	92	15	21	15	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1604025--1604061	14	2.6	14	86	0	56	48	21	0	29	1.50
1605901--1605966	19	3.4	19	83	4	87	37	24	22	15	1.92
1605940--1606018	32	2.4	33	93	2	133	48	24	17	10	1.78
1605956--1606013	14	3.9	14	77	16	62	50	25	15	8	1.73
1606047--1606104	14	3.9	14	77	16	62	10	15	24	50	1.75
1606030--1606120	32	2.8	33	93	3	157	12	17	21	48	1.80
1606107--1606151	20	2.2	20	88	0	63	17	22	20	40	1.92
1606636--1606675	18	2.2	18	90	0	62	15	12	45	27	1.82

Tables:   1   2   3   4   5   6   7

The End!