genome.fa.s8796.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008796.1 Hibiscus syriacus cultivar Beakdansim tig00111941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1607457

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845992--846025	18	1.9	18	88	5	52	32	32	20	14	1.93
847276--847367	21	4.4	21	73	13	91	18	18	26	36	1.94
847297--847604	41	7.4	41	89	6	440	17	20	24	38	1.93
847297--847604	130	2.5	123	87	5	440	17	20	24	38	1.93
847429--847497	21	3.3	21	67	18	63	18	18	26	36	1.94
847688--847719	6	5.5	6	96	3	57	31	53	15	0	1.43
848191--848227	5	7.4	5	87	0	56	0	37	27	35	1.57
854053--854091	21	1.9	20	84	5	51	41	0	10	48	1.37
864038--865055	202	4.8	209	92	3	1600	37	8	18	34	1.82
866521--866555	16	2.2	16	94	0	61	34	22	28	14	1.93
866572--866648	26	2.8	27	75	21	79	44	20	15	19	1.87
866910--866999	21	4.3	21	91	2	137	31	27	14	26	1.95
867050--867128	40	2.0	40	84	0	104	32	22	7	36	1.83
867073--867140	20	3.4	20	76	8	75	32	23	10	33	1.88
867063--867139	40	1.9	40	89	0	118	32	22	9	36	1.85
867297--867335	16	2.5	15	84	8	51	30	2	0	66	1.05
868076--868129	24	2.2	24	86	0	72	20	18	16	44	1.87
870648--870686	20	2.0	20	84	0	51	53	20	10	15	1.70
872139--872199	23	2.7	23	89	0	86	21	22	26	29	1.99
875187--875283	21	4.6	21	90	0	149	21	19	37	21	1.95
875428--875468	4	10.5	4	84	5	57	70	2	0	26	0.99
875654--875706	21	2.5	21	81	0	70	33	32	13	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875821--875920	42	2.4	42	86	3	130	20	19	33	28	1.96
877417--877454	20	2.0	20	84	5	51	44	13	15	26	1.83
877488--877531	20	2.1	21	83	4	54	31	18	9	40	1.81
877531--877568	20	1.9	20	88	0	58	42	10	26	21	1.85
877880--877912	14	2.5	13	90	9	57	21	0	0	78	0.75
877895--877939	23	1.9	24	86	4	65	13	15	0	71	1.15
880444--880483	21	1.9	22	90	10	66	12	10	40	37	1.77
880511--880553	21	2.0	21	95	0	77	27	27	20	23	1.99
880589--880631	21	2.0	21	100	0	86	13	27	44	13	1.83
880832--880891	29	2.0	31	93	6	106	43	16	6	33	1.74
883677--883740	34	1.9	32	87	6	92	23	29	17	29	1.97
884029--884071	21	2.0	21	95	0	77	27	27	20	23	1.99
884107--884149	21	2.0	21	100	0	86	13	27	44	13	1.83
884183--884259	20	4.1	19	79	14	88	12	27	35	24	1.92
884184--884235	16	3.0	16	83	11	59	11	28	32	26	1.91
884184--884255	36	2.0	36	91	0	117	13	29	31	25	1.94
884349--884408	29	2.0	31	93	6	106	43	16	6	33	1.74
889434--889474	20	2.0	20	86	9	57	21	2	12	63	1.40
893002--893089	31	2.8	30	81	10	97	54	3	1	40	1.24
896880--896913	10	3.4	10	91	0	50	91	0	8	0	0.43
897436--897460	3	8.3	3	100	0	50	0	0	32	68	0.90
899968--900072	51	2.0	53	90	3	169	20	13	14	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900658--900749	42	2.2	43	84	5	116	54	7	15	22	1.66
900671--900770	42	2.4	43	83	9	118	50	9	17	24	1.74
900800--900922	43	2.8	43	81	6	131	60	4	9	25	1.45
901044--901122	39	2.0	39	100	0	158	37	2	12	46	1.55
905500--905531	2	16.5	2	93	6	57	50	0	0	50	1.00
917488--917540	21	2.5	21	81	6	72	20	26	18	33	1.96
917530--917582	21	2.5	21	93	0	88	33	18	26	20	1.96
917572--917645	20	3.7	20	78	10	87	35	27	18	18	1.95
917572--917665	20	4.6	20	74	11	75	36	25	18	20	1.95
917572--917665	41	2.3	41	92	0	152	36	25	18	20	1.95
917824--917867	22	2.0	22	95	0	79	20	45	15	18	1.85
918118--918167	20	2.5	20	83	0	55	16	16	26	42	1.88
918134--918176	20	2.2	20	91	0	68	9	18	20	51	1.74
920057--920126	20	3.5	20	78	3	61	40	22	21	15	1.91
920068--920112	20	2.3	20	88	3	74	37	17	24	20	1.93
920076--920121	19	2.3	20	85	3	58	39	19	23	17	1.92
920124--920186	20	3.2	20	95	0	108	15	26	25	31	1.96
920157--920232	20	3.8	20	92	0	107	23	14	28	32	1.94
920124--920232	40	2.7	40	82	2	112	22	19	26	32	1.97
920601--920657	19	2.8	21	71	10	55	26	38	15	19	1.92
920571--920657	40	2.1	42	91	4	142	24	39	13	22	1.91
920594--920672	21	3.8	20	70	9	61	24	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922062--922100	14	2.8	14	84	0	51	35	0	17	46	1.49
922216--922278	19	3.3	19	79	2	72	41	17	22	19	1.90
922309--922364	20	2.8	20	94	0	94	14	21	23	41	1.89
922589--922663	20	3.8	20	92	0	123	29	20	28	22	1.98
922596--922704	20	5.4	20	83	6	121	24	19	27	28	1.98
922632--922726	41	2.3	41	83	3	120	22	20	23	34	1.96
922694--922745	20	2.5	21	87	3	70	21	23	17	38	1.93
922756--922848	20	4.7	20	89	0	105	29	27	17	25	1.97
922755--922848	40	2.3	40	81	0	116	29	27	17	25	1.97
923002--923035	12	2.9	12	86	4	52	17	41	5	35	1.74
923818--923842	12	2.1	12	100	0	50	72	0	28	0	0.86
926171--926229	19	3.4	19	73	22	74	45	18	22	13	1.84
926171--926264	33	2.8	33	95	0	161	44	18	24	12	1.84
926264--926359	19	5.3	19	79	14	98	12	16	23	46	1.81
926279--926342	33	1.9	33	87	6	94	10	15	23	50	1.76
926274--926388	52	2.2	52	89	3	169	10	20	21	47	1.79
926274--926391	19	6.7	19	73	18	105	11	19	22	47	1.80
926293--926399	52	2.1	52	87	0	151	12	19	20	47	1.81
926498--926534	14	2.6	14	91	0	65	45	24	0	29	1.53
928209--928393	91	2.0	92	91	6	304	47	18	12	22	1.82
930059--930184	52	2.4	52	87	1	189	43	21	23	11	1.85
930059--930184	19	7.1	19	71	17	101	43	21	23	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930180--930272	33	2.8	32	88	4	123	10	20	24	44	1.83
930210--930278	20	3.8	19	68	26	60	11	21	21	44	1.84
930853--930908	20	2.7	21	80	5	69	42	16	21	19	1.89
930846--930918	21	3.5	21	79	3	76	36	17	21	23	1.94
930928--930979	20	2.5	21	87	3	70	21	23	17	38	1.93
930830--930994	41	4.0	40	70	7	125	30	18	20	30	1.96
930969--931021	21	2.5	22	81	6	74	33	18	26	20	1.96
933274--933392	22	5.4	22	82	6	71	40	17	16	25	1.90
933296--933403	44	2.5	44	89	0	162	37	17	16	27	1.92
933299--933403	22	4.8	22	81	9	124	38	17	17	27	1.92
933745--933837	7	13.1	7	76	13	66	39	2	3	54	1.28
933776--933837	2	33.5	2	75	15	62	45	1	0	53	1.10
933776--933837	20	2.9	21	85	9	81	45	1	0	53	1.10
933776--933836	17	3.7	17	76	12	56	45	1	0	52	1.10
933825--933883	26	2.3	26	83	11	70	45	3	6	44	1.47
933818--933883	29	2.4	30	82	12	79	46	3	6	43	1.43
933895--933930	3	11.7	3	94	5	63	36	0	0	63	0.94
934010--934058	22	2.2	22	96	0	89	32	20	18	28	1.96
939807--939839	15	2.2	15	94	0	57	21	6	60	12	1.53
939922--939986	21	3.1	21	93	0	103	41	12	30	15	1.84
940020--940085	33	2.0	33	90	0	105	31	0	45	22	1.53
942162--942879	200	3.7	201	90	4	1131	35	14	17	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943168--943196	15	1.9	15	100	0	58	20	37	6	34	1.80
945835--945944	51	2.1	53	79	12	122	37	17	20	24	1.94
948906--949054	73	2.1	73	81	11	173	32	16	21	29	1.95
949344--949506	87	1.9	87	94	2	292	34	15	11	39	1.83
949420--949469	23	2.2	23	96	0	91	36	24	6	34	1.80
956032--956058	14	1.9	14	100	0	54	48	22	7	22	1.75
956107--956131	2	12.5	2	100	0	50	52	0	0	48	1.00
956683--956801	31	3.8	31	91	2	177	36	21	19	21	1.95
957372--957444	36	2.0	37	97	2	139	20	32	30	16	1.95
961073--961197	31	4.0	31	91	2	180	39	21	18	20	1.93

Tables:   1   2   3   4   5   6   7