genome.fa.s880.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000880.1 Hibiscus syriacus cultivar Beakdansim tig00001713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1459553

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 802 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308693--308840	60	2.4	61	82	5	167	20	25	32	22	1.98
308956--309001	24	1.9	24	100	0	92	41	2	0	56	1.11
308947--309031	31	2.8	32	80	16	83	42	1	1	55	1.15
308983--309055	33	2.3	32	83	9	87	42	0	0	57	0.98
308964--309078	32	3.7	30	77	15	94	41	1	0	56	1.09
309175--309231	24	2.4	25	82	8	66	35	0	1	63	1.05
310867--310927	21	2.9	21	85	0	86	16	34	22	26	1.95
311443--311511	34	2.0	34	94	0	120	56	7	2	33	1.42
311597--311627	14	2.2	14	100	0	62	58	16	0	25	1.38
313398--313441	22	2.0	22	86	8	63	45	0	0	54	0.99
313407--313452	22	2.1	22	84	4	58	47	0	0	52	1.00
313425--313467	18	2.4	18	88	3	61	48	0	0	51	1.00
313958--313993	19	1.9	18	88	5	54	55	0	0	44	0.99
317071--317106	16	2.2	16	95	0	63	38	11	11	38	1.76
323113--323341	101	2.3	102	81	5	259	30	17	21	30	1.96
324483--324524	15	2.8	15	88	0	57	26	26	30	16	1.97
325199--325233	14	2.5	14	100	0	70	34	5	22	37	1.78
325378--325458	23	3.5	23	86	0	108	18	20	28	32	1.97
325378--325472	46	2.1	46	87	0	136	18	17	27	35	1.94
325399--325472	23	3.2	23	79	7	87	18	16	28	36	1.93
325460--325511	24	2.2	24	82	0	59	23	9	21	46	1.80
331482--331998	169	3.1	167	87	3	729	27	17	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333720--333770	2	26.5	2	92	7	79	47	1	0	50	1.12
334545--334960	208	2.0	208	91	0	672	28	19	16	35	1.94
336564--336629	14	4.6	14	98	1	123	22	15	34	27	1.94
341461--341512	20	2.6	20	78	6	61	34	32	17	15	1.91
341461--341576	21	5.6	21	67	7	58	35	25	18	20	1.96
341564--341656	20	4.6	20	71	14	75	36	25	20	17	1.94
341625--341715	41	2.2	41	92	0	146	37	27	17	17	1.92
341625--341718	21	4.6	21	83	9	122	36	27	18	18	1.94
342273--342344	20	3.6	19	83	5	81	52	19	15	12	1.74
342288--342351	21	3.1	21	84	6	87	51	17	20	10	1.75
342333--342397	14	4.3	14	73	17	58	46	21	21	10	1.82
342329--342393	33	2.0	33	96	0	121	46	21	20	12	1.83
342334--342404	33	2.2	33	89	0	106	47	22	18	11	1.80
342418--342474	20	2.9	19	89	7	87	14	24	22	38	1.91
344122--344499	94	4.1	94	92	2	602	22	12	18	46	1.83
344122--344479	186	1.9	186	92	1	601	22	13	18	46	1.83
344579--344698	19	6.9	18	73	21	96	45	23	20	10	1.82
344579--344697	33	3.5	33	87	3	148	46	22	20	10	1.81
344709--344791	19	4.6	19	79	14	113	10	22	21	44	1.83
345268--345334	21	3.2	21	66	6	55	23	35	20	19	1.95
346824--346889	19	3.7	19	75	19	79	45	19	22	12	1.83
346899--347046	33	4.3	33	77	11	161	14	22	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346895--347033	20	7.7	19	71	18	109	14	22	19	43	1.87
346895--347032	73	1.9	72	89	1	213	14	22	19	43	1.87
347040--347112	20	3.6	20	68	17	60	24	17	24	32	1.97
349573--349626	24	2.2	24	93	0	90	40	20	18	20	1.91
350488--350543	20	2.8	20	97	0	103	23	17	19	39	1.92
350541--350609	21	3.3	21	77	2	68	36	15	24	23	1.94
350660--350892	20	11.6	20	80	7	249	18	19	25	36	1.94
350681--350892	41	5.2	41	92	1	347	18	18	25	37	1.94
350901--350953	20	2.7	20	91	5	81	13	18	24	43	1.86
350660--350953	81	3.6	81	82	8	332	18	19	25	37	1.94
350660--350953	40	7.3	40	78	11	262	18	19	25	37	1.94
351002--351056	20	2.8	20	73	15	60	20	18	29	32	1.96
353187--353237	20	2.6	19	84	6	66	31	17	13	37	1.89
355973--356027	21	2.6	21	94	0	92	27	16	32	23	1.96
355973--356081	21	5.2	21	79	6	78	24	13	33	28	1.94
358401--358500	30	3.4	29	78	10	105	59	15	13	13	1.62
358477--358586	58	1.9	57	81	10	134	59	11	11	17	1.61
359942--359967	13	2.0	13	100	0	52	69	0	0	30	0.89
360364--360426	28	2.2	28	88	5	92	42	17	12	26	1.85
360487--360568	30	2.8	29	74	7	78	34	14	24	26	1.94
360748--360914	69	2.4	65	78	16	162	41	9	16	32	1.80
361505--362295	6	132.5	6	78	1	708	5	6	46	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361976--362014	14	2.8	14	88	0	51	7	2	48	41	1.45
361505--362295	8	99.4	8	89	1	708	5	6	46	41	1.52
363335--363393	2	30.0	2	89	3	75	44	0	6	49	1.29
363341--363392	18	2.9	18	88	0	86	42	0	7	50	1.31
367330--367457	29	4.3	29	71	6	96	53	10	14	21	1.70
367332--367493	59	2.7	59	79	8	161	55	10	13	20	1.67
368859--368906	24	2.0	24	92	4	80	68	4	2	25	1.18
368876--368952	16	4.9	16	72	15	63	68	6	0	24	1.13
371121--371152	15	2.1	16	94	5	57	46	0	0	53	1.00
381832--381895	22	3.0	21	79	4	74	26	20	21	31	1.98
382494--382534	21	2.0	21	95	0	73	26	21	24	26	2.00
397520--397603	38	2.2	39	91	2	134	39	11	17	30	1.86
399501--399537	19	1.9	19	88	0	56	32	13	24	29	1.93
401106--401196	23	4.0	23	82	0	110	19	25	25	29	1.99
402963--402996	16	2.1	16	89	10	52	5	29	0	64	1.17
405313--405369	24	2.4	24	96	0	105	15	31	0	52	1.43
416574--416622	2	25.0	2	95	4	91	51	0	0	48	1.00
418430--418492	30	2.1	30	81	0	72	34	14	11	39	1.81
419755--419803	20	2.5	20	96	0	89	28	24	12	34	1.91
420457--420481	2	12.5	2	100	0	50	52	0	0	48	1.00
421615--421658	21	2.1	21	86	0	61	40	2	2	54	1.25
421684--421729	20	2.2	21	88	3	67	71	6	2	19	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423014--423361	180	1.9	179	99	0	687	39	10	4	45	1.59
428878--428908	7	4.4	7	91	0	53	48	29	0	22	1.51
429084--429162	7	11.3	7	75	0	68	21	1	30	46	1.59
429084--429162	21	3.8	21	73	6	79	21	1	30	46	1.59
431161--431239	24	3.3	24	98	1	151	29	17	16	36	1.92
431463--431528	30	2.2	30	86	0	87	9	28	24	37	1.86
432680--432732	21	2.5	21	87	0	79	20	24	18	35	1.95
432722--432855	20	6.7	20	88	1	205	38	20	20	20	1.94
432842--432908	20	3.3	20	95	0	116	31	26	19	22	1.98
433724--433777	24	2.2	24	90	0	81	22	18	18	40	1.91
436157--436211	20	2.8	20	94	0	92	32	25	21	20	1.97
436183--436276	33	2.8	33	90	3	134	43	20	22	13	1.87
436216--436302	20	4.7	20	80	15	107	45	18	21	13	1.84
436313--436408	33	2.9	34	90	3	149	12	23	20	42	1.86
436335--436388	14	3.5	14	73	22	54	11	24	20	44	1.83
436509--436545	14	2.6	14	86	0	56	48	21	0	29	1.50
438461--438549	20	4.4	20	94	0	151	37	24	20	17	1.94
438594--438770	20	8.5	20	75	13	142	18	18	21	42	1.89
438572--438680	40	2.9	39	84	8	138	18	19	22	40	1.92
440652--440740	20	4.5	20	82	1	90	46	23	15	14	1.83
441069--441134	22	3.0	22	90	0	105	22	13	37	25	1.91
441359--441404	21	2.2	21	92	0	74	41	15	26	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441439--441484	20	2.3	20	100	0	92	19	23	34	21	1.96
444390--444442	26	2.1	25	85	3	70	47	11	1	39	1.50
445662--445721	31	1.9	31	89	0	93	33	20	20	26	1.97
445993--446050	24	2.7	21	78	21	66	44	20	6	27	1.77
446410--446465	22	2.7	22	89	8	82	25	25	21	28	1.99
446489--446565	21	3.6	21	71	10	66	29	23	15	31	1.95
447124--447167	12	3.7	12	93	0	79	0	43	0	56	0.99
450400--450439	21	1.9	21	85	10	55	55	0	17	27	1.43
455254--455307	21	2.5	21	81	3	63	20	0	48	31	1.50
457940--458023	26	3.2	26	93	1	132	45	23	1	29	1.61

Tables:   1   2   3   4   5   6   7