genome.fa.s880.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000880.1 Hibiscus syriacus cultivar Beakdansim tig00001713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1459553

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 802 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1319120--1319195	28	2.9	25	71	28	68	43	1	5	50	1.33
1319172--1319214	16	2.6	16	85	3	50	46	0	2	51	1.13
1319779--1319823	20	2.3	20	80	3	56	48	2	2	46	1.26
1326767--1326798	16	2.0	16	93	0	55	31	15	6	46	1.71
1335335--1335444	47	2.4	45	85	7	150	33	23	5	37	1.78
1335441--1335483	20	2.2	20	86	0	59	58	18	4	18	1.56
1342118--1342159	21	2.0	20	82	13	50	54	4	4	35	1.42
1342753--1342843	47	1.9	47	88	0	137	34	21	6	37	1.80
1342849--1342891	20	2.2	20	82	0	50	58	16	4	20	1.56
1347808--1347851	15	2.9	15	96	0	79	18	38	0	43	1.50
1347862--1347912	15	3.4	15	80	0	57	33	35	0	31	1.58
1348932--1349007	38	2.0	38	89	0	116	43	17	13	26	1.85
1350305--1350347	18	2.3	19	80	4	52	25	0	0	74	0.82
1350312--1350349	11	3.4	11	85	14	51	21	0	0	78	0.74
1350307--1350364	27	2.1	27	81	9	64	22	1	0	75	0.89
1350313--1350396	33	2.5	34	75	12	84	22	1	3	72	1.07
1355799--1355878	23	3.7	22	80	8	85	17	25	35	22	1.95
1361593--1361707	24	4.8	24	88	4	160	40	19	15	25	1.91
1361573--1361724	48	3.2	47	80	6	153	43	19	13	24	1.86
1361573--1361724	72	2.1	71	79	8	173	43	19	13	24	1.86
1368325--1368356	15	2.1	15	94	0	55	6	21	3	68	1.26
1369859--1369918	21	2.6	24	79	10	72	35	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1369977--1370024	20	2.4	21	82	6	55	35	27	16	20	1.94
1374218--1374250	16	1.9	18	88	11	52	60	3	0	36	1.12
1375683--1375729	25	1.9	24	86	4	67	59	0	2	38	1.09
1376626--1376697	31	2.3	31	90	0	108	50	15	9	25	1.74
1384980--1385023	21	2.1	21	82	0	52	25	50	11	13	1.75
1387096--1387217	43	2.8	43	77	0	136	31	22	18	27	1.97
1388808--1389392	256	2.2	255	85	8	768	41	19	11	28	1.86
1392090--1392138	22	2.2	22	85	0	71	30	36	20	12	1.89
1392699--1392856	63	2.5	64	83	7	180	23	18	22	35	1.96
1397696--1397729	17	1.9	18	88	5	52	52	8	0	38	1.33
1399134--1399173	17	2.3	18	84	16	57	77	0	15	7	0.98
1399633--1400038	116	3.5	114	77	9	360	36	15	22	25	1.93
1400387--1400421	2	17.5	2	100	0	70	51	0	0	48	1.00
1400444--1400741	38	8.2	37	70	23	199	44	4	9	42	1.55
1400444--1400588	70	2.1	72	93	3	251	45	4	8	41	1.55
1400535--1400634	46	2.2	46	92	1	166	41	6	10	43	1.63
1400659--1400739	40	2.1	40	84	9	105	50	2	8	38	1.46
1403718--1403941	37	6.1	35	75	15	197	42	5	9	41	1.62
1403718--1403982	37	7.1	37	74	15	192	41	6	9	42	1.62
1403718--1403934	110	2.0	110	82	12	268	43	5	9	41	1.62
1403729--1403969	75	3.3	72	76	14	217	41	6	9	41	1.64
1403850--1403982	38	3.5	40	70	17	111	42	6	7	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404026--1404076	12	4.3	12	88	11	79	31	0	0	68	0.90
1404022--1404077	24	2.2	26	93	6	98	30	0	0	69	0.89
1404022--1404091	24	2.8	24	83	12	81	31	0	0	68	0.90
1405314--1405344	4	7.8	4	100	0	62	22	0	0	77	0.77
1406594--1406630	19	2.0	18	89	5	56	5	10	5	78	1.08
1408603--1408800	97	2.1	96	88	4	292	27	11	31	29	1.91
1420624--1420653	9	3.3	9	95	0	51	13	6	10	70	1.34
1429573--1429894	38	8.5	37	73	13	219	42	4	9	44	1.55
1429573--1429894	112	2.8	111	76	10	276	42	4	9	44	1.55
1429841--1429884	17	2.6	17	88	0	61	43	2	4	50	1.35
1429879--1429935	17	3.3	18	77	22	52	24	0	1	73	0.92
1429892--1429934	10	4.5	10	81	18	56	25	0	0	74	0.82
1429889--1429936	13	3.8	13	86	8	64	25	0	0	75	0.81
1439556--1439853	129	2.3	129	92	0	506	31	11	23	32	1.91
1441383--1441422	20	2.0	20	90	0	62	22	22	17	37	1.94
1442978--1443061	38	2.2	37	89	2	132	38	40	9	11	1.75
1445165--1445265	47	2.1	47	92	0	175	39	17	23	18	1.92
1446678--1446764	44	2.0	44	86	2	120	51	2	5	40	1.38
1448729--1448821	21	4.6	20	78	4	96	38	18	24	18	1.92
1448726--1448821	41	2.3	41	98	0	183	39	17	23	18	1.92
1448729--1448821	20	4.6	20	78	4	96	38	18	24	18	1.92
1448810--1448923	20	5.7	20	82	2	111	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1448807--1448923	61	1.9	61	85	0	162	35	23	17	23	1.95
1449476--1449520	19	2.4	19	92	0	72	48	26	15	8	1.74
1449516--1449700	19	10.1	19	75	14	156	12	21	21	43	1.86
1449516--1449605	39	2.3	38	94	1	153	12	20	22	45	1.83
1449588--1449675	33	2.6	33	92	1	140	11	25	25	38	1.89
1451696--1451818	42	2.9	42	80	2	122	22	36	17	22	1.95
1451752--1451818	21	3.2	21	66	6	55	23	35	20	19	1.95
1453174--1453211	14	2.8	13	88	7	58	31	0	21	47	1.51
1453164--1453220	13	4.4	13	77	14	55	28	0	19	52	1.46
1453390--1453507	19	6.7	19	66	19	76	13	23	20	42	1.88
1453394--1453487	33	2.8	33	98	0	179	12	24	19	43	1.85
1455780--1455804	12	2.1	12	100	0	50	0	28	0	72	0.86
1457266--1457303	14	2.7	15	84	12	53	50	18	0	31	1.47
1457662--1457712	20	2.5	20	93	0	84	33	23	23	19	1.97
1457757--1457802	18	2.6	18	100	0	92	15	21	17	45	1.85
1457919--1457955	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1   2   3   4   5   6   7

The End!