genome.fa.s880.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000880.1 Hibiscus syriacus cultivar Beakdansim tig00001713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1459553

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 802 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
819527--819615	3	29.7	3	100	0	178	67	0	0	32	0.91
819958--820097	60	2.3	60	83	2	183	34	16	10	39	1.82
819958--820114	60	2.6	60	82	2	181	32	17	10	39	1.84
820653--820709	22	2.5	22	78	16	64	64	0	3	31	1.10
826985--827049	27	2.4	27	97	0	121	32	20	0	47	1.50
828250--828323	21	3.5	21	92	0	121	22	21	17	37	1.94
828331--828422	21	4.4	21	86	2	132	39	19	20	20	1.93
828331--828422	41	2.2	42	88	1	132	39	19	20	20	1.93
828416--828474	20	3.0	20	87	9	93	49	23	13	13	1.78
828603--828645	22	2.0	22	100	0	86	25	46	13	13	1.81
829016--829124	20	5.8	20	80	12	133	11	17	20	50	1.77
829010--829119	33	3.1	34	81	14	134	10	16	20	51	1.74
831101--831130	4	7.5	4	92	0	51	26	0	0	73	0.84
831266--831379	21	5.4	21	82	2	131	22	37	17	21	1.94
831270--831379	42	2.6	42	92	0	175	22	38	17	21	1.93
832759--832895	64	2.1	64	95	0	247	29	1	17	51	1.54
832951--832991	20	2.0	20	95	0	73	41	24	17	17	1.89
833116--833159	20	2.2	20	95	0	79	15	22	22	38	1.92
833420--833458	12	3.3	12	89	3	53	15	7	15	61	1.55
836508--836545	15	2.4	16	86	4	51	63	2	5	28	1.30
836682--836728	18	2.6	18	82	3	58	31	14	23	29	1.95
836768--836816	20	2.5	20	96	0	89	18	10	26	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836827--836881	19	2.8	19	72	22	60	21	14	30	32	1.93
837454--837529	20	3.8	20	71	13	66	27	27	17	27	1.97
837517--837806	21	14.3	21	75	14	288	42	22	15	20	1.89
837538--837809	41	6.8	41	93	4	416	41	22	15	20	1.90
838229--838319	19	4.4	20	74	17	87	30	26	5	37	1.79
841296--841490	36	5.3	35	80	7	201	43	4	9	43	1.55
841590--841625	18	1.9	19	94	5	65	47	2	5	44	1.41
841661--841723	30	2.0	30	84	6	81	33	1	1	63	1.13
863710--863768	24	2.5	23	89	5	100	42	5	10	42	1.60
863644--863742	38	2.6	37	81	6	119	47	3	7	42	1.46
863732--863804	36	2.0	36	97	2	137	39	5	10	43	1.63
863671--863850	60	3.0	59	83	8	220	43	4	7	44	1.53
863769--863820	23	2.2	24	93	3	88	38	3	9	48	1.54
863899--863931	17	1.9	17	93	0	57	45	3	6	45	1.43
872320--872379	20	3.0	20	83	9	79	66	0	0	33	0.92
872305--872386	27	3.2	25	76	20	71	65	0	1	32	1.00
872304--872386	12	7.2	12	82	13	102	66	0	1	32	1.00
873771--873850	35	2.3	35	86	0	106	43	22	1	32	1.61
873784--873866	35	2.4	35	81	0	94	42	28	2	26	1.68
874026--874308	147	2.0	143	88	4	424	36	4	9	48	1.58
874808--874886	35	2.2	36	91	6	126	32	0	21	45	1.52
881209--881273	33	2.0	33	90	0	103	63	3	9	24	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881750--881790	21	1.9	22	85	5	57	68	17	4	9	1.35
884945--884982	20	1.9	20	88	0	58	42	10	15	31	1.81
885574--885632	2	29.5	2	100	0	118	50	0	0	49	1.00
889450--889953	213	2.4	214	91	1	814	37	13	13	35	1.84
891461--892472	200	5.1	200	80	3	1047	40	13	12	33	1.83
891506--892472	399	2.4	398	81	4	1070	40	13	12	32	1.83
893235--893397	65	2.5	64	84	3	220	26	15	26	30	1.96
893345--893395	19	2.7	19	85	8	70	25	15	35	23	1.94
893239--893446	65	3.2	65	80	12	216	27	17	25	29	1.97
900818--900980	65	2.5	64	83	3	211	27	15	26	30	1.96
900928--900978	19	2.7	19	85	8	70	25	15	35	23	1.94
900822--901029	65	3.2	65	81	12	198	27	16	25	30	1.97
901528--901576	23	2.1	23	92	0	80	36	14	10	38	1.80
905451--906274	225	3.7	225	89	2	1210	38	13	16	31	1.88
906647--906686	20	2.0	20	95	0	71	22	25	17	35	1.95
910160--910195	15	2.3	16	95	4	65	55	8	30	5	1.52
912125--912245	44	2.8	43	74	13	113	28	26	20	24	1.99
912212--912264	20	2.7	20	93	0	88	30	30	24	15	1.95
914831--914968	64	2.1	66	85	5	183	30	23	16	28	1.96
917983--918350	130	2.8	129	81	4	434	33	10	15	39	1.83
924351--924404	23	2.3	23	87	0	72	31	24	24	20	1.98
931181--931274	21	4.4	20	74	19	66	34	28	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931167--931252	44	2.0	44	86	4	120	30	26	18	24	1.98
931176--931261	21	4.0	21	77	16	77	31	27	18	22	1.97
932122--932728	297	2.0	303	93	3	1037	37	20	8	33	1.83
937205--937333	7	19.0	7	78	17	114	73	0	16	10	1.09
937223--937303	11	7.3	11	70	21	53	76	0	16	7	1.00
937210--937363	21	7.8	20	75	18	112	75	0	15	9	1.04
937238--937358	32	3.8	32	78	13	101	75	0	16	8	1.04
937213--937371	14	11.5	13	73	17	83	76	0	15	8	1.01
937210--937371	80	2.0	80	81	13	192	75	0	15	8	1.02
937329--937373	16	2.9	16	81	15	58	80	0	15	4	0.87
937330--937387	18	3.0	20	74	23	61	77	1	15	5	1.02
938605--939179	134	4.3	134	80	6	608	34	21	13	30	1.92
938692--939182	268	1.8	267	86	3	718	33	21	14	30	1.93
939972--940013	3	14.0	3	100	0	84	66	0	0	33	0.92
940181--940694	190	2.6	196	81	9	591	34	12	13	39	1.82
941601--941634	6	5.7	6	96	0	50	52	5	8	32	1.56
944145--944186	18	2.3	18	84	12	50	33	11	14	40	1.82
944183--944228	18	2.5	19	79	10	60	34	6	28	30	1.82
945140--945195	20	2.8	21	81	8	71	32	21	8	37	1.84
948430--948490	27	2.3	26	80	8	68	24	11	14	49	1.77
949409--949443	13	2.7	13	100	0	70	28	22	22	25	1.99
958305--958342	18	2.1	19	90	5	60	34	13	2	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958315--958366	19	2.8	19	82	2	61	26	17	7	48	1.74
961078--961121	21	2.1	21	86	0	61	29	27	27	15	1.96
961147--961191	22	2.0	22	86	4	63	31	33	26	8	1.87
962393--962428	18	2.0	18	100	0	72	11	22	33	33	1.89
962290--962531	121	2.0	121	95	0	430	23	14	25	36	1.93
962411--962626	103	2.1	103	95	0	387	24	13	25	36	1.92
962643--962702	23	2.6	23	89	0	84	20	25	28	26	1.99
962633--962710	23	3.3	23	80	1	75	23	19	23	34	1.96
968942--968999	25	2.3	25	85	5	73	55	0	6	37	1.27
969958--970008	12	4.3	12	76	18	54	33	0	0	66	0.92
969966--970135	12	13.7	12	67	21	93	41	0	1	57	1.06
969970--970183	64	3.5	63	89	6	316	43	0	0	55	1.06
970021--970105	38	2.2	37	85	12	109	43	0	1	55	1.07
970124--970234	49	2.3	50	93	6	201	47	0	0	52	1.00
970124--970234	24	4.6	25	96	3	201	47	0	0	52	1.00
969997--970212	87	2.5	89	80	11	273	45	0	0	53	1.06
970257--970318	19	3.3	19	78	15	58	37	1	0	61	1.06
974877--974980	52	2.0	52	98	0	199	37	15	14	32	1.88
981900--981958	3	19.3	3	96	3	109	66	0	0	33	0.92
983306--983493	13	13.3	13	69	20	78	47	4	5	43	1.45
983300--983436	11	12.3	11	69	16	68	48	3	3	43	1.37
983379--983427	17	2.7	19	78	15	59	44	6	2	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983372--983436	35	1.9	33	84	6	85	47	4	1	46	1.32
983372--983436	18	3.7	17	80	12	69	47	4	1	46	1.32
983483--983522	18	2.2	18	95	0	71	60	5	2	32	1.32
983742--983782	20	2.1	19	90	4	64	41	0	9	48	1.36
983748--983809	20	3.4	18	74	21	58	38	3	9	48	1.52
983820--983917	7	14.0	7	78	8	74	23	0	25	51	1.49
983820--983916	28	3.4	27	78	17	99	23	0	25	50	1.49
983820--983916	21	4.6	21	85	0	104	23	0	25	50	1.49
984746--984778	2	16.5	2	100	0	66	48	0	0	51	1.00
984865--984898	17	1.9	17	88	5	50	41	0	26	32	1.56

Tables:   1   2   3   4   5   6   7