genome.fa.s880.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000880.1 Hibiscus syriacus cultivar Beakdansim tig00001713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1459553

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 802 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460850--460959	41	2.7	41	87	5	145	47	0	1	50	1.18
460842--460921	23	3.7	23	70	17	71	48	1	1	48	1.17
460924--460968	21	2.1	22	84	12	58	51	2	2	44	1.26
460883--460994	23	5.3	21	68	18	63	49	1	0	48	1.18
470959--471081	63	2.0	63	85	6	169	45	8	1	43	1.45
475044--475130	23	3.7	23	75	14	79	27	26	25	20	1.99
481034--481079	23	2.0	23	86	0	65	32	26	23	17	1.97
485630--485695	21	3.1	21	79	12	73	51	1	3	43	1.26
487488--487512	13	1.9	13	100	0	50	88	0	12	0	0.53
487754--487780	6	4.5	6	100	0	54	14	0	0	85	0.61
504117--504153	18	2.0	18	94	5	65	54	0	0	45	1.00
508240--508319	40	2.0	39	95	2	142	21	10	10	58	1.59
512464--512531	35	1.9	35	100	0	136	33	23	20	22	1.97
512801--512828	14	2.0	14	100	0	56	0	50	0	50	1.00
513002--513055	24	2.2	24	78	15	58	42	22	5	29	1.76
514203--514236	17	2.0	17	88	11	52	38	14	0	47	1.45
514647--514673	14	1.9	14	100	0	54	29	25	0	44	1.54
527816--527880	23	2.8	23	95	2	112	21	32	20	26	1.97
530153--530210	21	2.8	21	94	0	98	17	41	27	13	1.87
535376--535458	23	3.8	22	74	6	87	25	27	25	21	1.99
536938--536978	18	2.3	18	86	0	55	41	24	29	4	1.75
537288--537336	21	2.2	22	82	7	55	18	2	26	53	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548504--548689	93	2.0	93	97	0	354	34	16	10	38	1.83
549388--549496	42	2.6	42	80	2	112	36	22	24	16	1.94
549388--549483	42	2.3	43	83	1	113	33	22	26	17	1.96
550729--550753	13	1.9	13	100	0	50	40	16	0	44	1.47
552456--552824	55	6.7	56	91	2	586	36	12	18	32	1.88
552456--552824	111	3.3	111	91	2	575	36	12	18	32	1.88
557282--557349	30	2.3	30	84	5	84	54	5	22	17	1.64
559297--559375	22	3.7	22	89	5	126	29	24	26	20	1.99
559412--559456	22	2.0	22	91	4	72	28	33	26	11	1.91
560686--560898	103	2.1	103	92	0	354	27	13	23	36	1.92
560915--560982	23	3.0	23	88	0	91	20	26	26	26	1.99
567931--567983	21	2.5	21	96	3	97	35	11	18	33	1.87
570126--570176	14	3.6	14	83	2	57	31	21	19	27	1.97
570126--570181	28	2.0	29	85	3	78	30	23	17	28	1.97
570175--570213	14	2.8	14	80	0	51	17	25	17	38	1.92
570186--570226	21	1.9	22	85	5	57	17	21	19	41	1.90
573116--573142	11	2.5	11	100	0	54	55	7	0	37	1.28
573823--573855	17	1.9	17	93	0	57	33	21	24	21	1.97
575960--576008	18	2.7	18	81	9	64	14	2	38	44	1.56
576461--576508	17	2.8	17	100	0	96	29	31	10	29	1.90
580162--580225	26	2.4	27	84	2	94	23	6	14	56	1.61
585841--585909	28	2.5	28	81	11	72	14	15	4	65	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594743--595358	310	2.0	306	97	2	1155	37	17	10	35	1.83
596930--596968	20	2.0	20	89	0	60	38	7	23	30	1.83
604950--604983	2	17.0	2	100	0	68	50	0	0	50	1.00
611687--611849	60	2.7	61	80	13	146	33	17	6	42	1.76
618157--618187	7	4.4	7	91	0	53	51	0	38	9	1.35
618155--618189	14	2.4	14	95	4	61	51	0	40	8	1.33
623343--623380	18	2.2	17	90	4	58	34	5	18	42	1.73
623432--623468	18	2.1	18	94	0	65	16	35	16	32	1.91
624361--624548	94	2.0	94	94	2	333	27	7	11	53	1.64
624941--624991	2	25.5	2	100	0	102	50	0	0	49	1.00
625933--626245	83	3.8	83	78	6	325	29	17	20	33	1.95
630383--630442	21	2.9	21	97	0	111	23	26	25	25	2.00
642214--642258	23	2.0	22	86	4	63	40	2	2	55	1.24
645044--645083	20	2.1	20	86	9	57	25	5	25	45	1.73
645409--645460	22	2.4	22	90	0	77	44	9	15	30	1.78
652610--652703	42	2.2	41	85	5	125	28	21	17	32	1.95
661546--661882	185	1.8	187	84	1	462	31	9	14	43	1.78
689325--689418	20	4.8	19	74	14	66	48	19	18	13	1.80
689344--689522	20	8.9	20	72	12	116	40	21	20	17	1.91
689428--689535	40	2.7	40	92	0	180	37	23	22	16	1.93
689404--689522	60	2.0	61	90	6	188	36	23	21	17	1.94
689406--689535	20	6.4	20	78	8	138	36	24	21	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689646--689718	6	12.2	6	100	0	146	34	49	16	0	1.46
699921--699964	23	1.9	23	85	0	61	75	6	15	2	1.12
699954--700016	27	2.3	27	100	0	126	60	19	14	6	1.55
702800--702833	10	3.4	10	87	0	50	38	5	20	35	1.77
704183--704231	23	2.1	23	88	0	71	34	2	10	53	1.47
705039--705103	25	2.6	25	97	0	121	36	9	3	50	1.50
708862--708977	61	1.9	61	81	0	142	28	12	18	40	1.87
716356--716446	2	45.5	2	100	0	182	50	0	0	49	1.00
719431--719471	2	20.5	2	100	0	82	51	0	0	48	1.00
719540--719572	2	16.5	2	100	0	66	51	0	0	48	1.00
726864--726902	18	2.2	18	86	9	53	43	5	17	33	1.72
730192--730817	225	2.7	226	84	5	765	24	14	22	38	1.92
730830--730871	21	2.0	21	81	9	50	21	16	23	38	1.93
730907--731024	34	3.5	33	76	9	114	22	15	25	36	1.93
730991--731152	60	2.7	61	86	2	229	26	13	20	38	1.90
731543--731585	15	2.9	15	89	3	61	37	30	0	32	1.58
732500--732542	2	21.5	2	100	0	86	48	0	0	51	1.00
743296--743422	32	4.2	32	87	10	196	35	0	37	27	1.57
743328--743413	25	3.2	25	83	11	91	34	0	37	27	1.57
744520--744567	18	2.7	18	76	20	55	39	6	4	50	1.47
745366--745407	22	2.1	19	86	13	57	11	19	14	54	1.70
745366--745415	19	2.4	21	84	15	61	14	20	14	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748850--748906	22	2.5	23	85	5	71	78	1	3	15	0.96
750224--750523	111	2.7	111	90	3	478	30	15	22	31	1.95
750833--750919	42	2.1	41	86	2	120	31	19	19	29	1.97
751029--751154	42	3.0	42	77	4	130	29	21	22	26	1.99
751511--751618	42	2.6	41	85	2	153	30	21	20	27	1.98
750793--751928	232	4.9	232	88	2	1553	33	18	16	32	1.93
750793--751928	466	2.5	463	86	4	1571	33	18	16	32	1.93
754823--754924	42	2.5	41	83	4	116	32	21	21	24	1.98
755035--755143	41	2.6	41	81	4	112	29	21	22	27	1.99
755035--755158	42	3.0	39	77	12	115	29	20	22	27	1.99
754798--755921	230	4.9	233	88	4	1533	34	17	15	31	1.92
755520--755621	42	2.5	41	83	3	141	30	21	21	26	1.98
766013--766139	48	2.6	48	89	0	182	24	20	15	39	1.91
767755--767799	23	2.0	23	90	0	72	53	0	0	46	1.00
768178--768223	22	2.1	22	91	0	74	34	15	26	23	1.94
768794--768889	48	2.0	48	97	0	183	38	12	22	26	1.90
769034--769086	25	2.2	25	89	3	81	11	18	15	54	1.70
770932--770987	19	2.9	19	83	0	67	23	28	16	32	1.96
772933--772977	23	2.0	23	81	0	54	20	13	46	20	1.83
774892--774946	27	2.0	27	85	0	74	23	32	14	29	1.94
777741--777775	17	2.1	17	100	0	70	11	42	17	28	1.83
783127--783357	114	2.0	115	99	0	455	48	10	13	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784451--784500	21	2.4	21	100	0	100	30	28	4	38	1.75
787371--787429	20	2.8	21	74	7	66	23	16	32	27	1.96
799945--799981	19	1.9	19	94	0	65	24	40	16	18	1.90
799881--800088	65	3.2	64	83	8	201	29	25	17	26	1.98
800012--800049	19	2.0	20	94	5	69	26	31	26	15	1.96
799930--800088	65	2.5	65	86	3	205	30	25	16	27	1.97
802815--802866	18	2.9	18	79	0	68	34	9	11	44	1.73
810202--810512	41	7.5	41	82	1	325	36	17	18	27	1.93
810414--810634	41	5.4	41	71	16	116	33	21	18	26	1.96
814812--814889	37	2.1	38	81	9	90	51	3	0	44	1.19

Tables:   1   2   3   4   5   6   7