genome.fa.s8821.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008821.1 Hibiscus syriacus cultivar Beakdansim tig00111989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1271541

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 725 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565513--565570	20	2.7	21	84	10	64	32	24	20	22	1.98
566372--566451	20	3.9	21	95	4	146	13	21	30	35	1.92
566372--566451	41	2.0	41	95	5	144	13	21	30	35	1.92
568745--568811	33	2.0	33	100	0	134	43	14	8	32	1.77
572550--572608	20	3.1	19	78	4	57	62	10	0	27	1.27
574506--574551	2	23.0	2	95	0	83	52	0	0	47	1.00
575064--575106	18	2.5	17	85	7	61	67	2	4	25	1.22
575462--575566	37	2.8	37	83	0	129	29	15	14	40	1.86
576109--576739	105	6.0	105	90	3	898	22	17	26	33	1.96
576939--577014	36	2.1	36	90	0	116	40	15	21	22	1.90
576924--577284	101	3.7	101	86	9	468	37	12	21	29	1.90
577364--577544	35	5.1	35	73	9	127	45	8	16	29	1.77
577300--577544	71	3.4	71	87	6	300	44	10	17	28	1.81
583571--583613	18	2.5	17	81	7	52	65	2	6	25	1.30
583970--584073	37	2.8	37	86	0	136	29	14	12	43	1.82
584100--584151	20	2.6	20	90	0	77	32	19	15	32	1.93
584287--584317	15	2.1	15	100	0	62	29	32	12	25	1.93
588794--589023	116	2.0	116	92	0	388	36	16	14	33	1.89
590173--590222	19	2.9	16	78	16	55	24	16	20	40	1.91
590246--590284	16	2.5	16	88	12	55	33	10	20	35	1.86
590373--590416	23	1.9	23	90	0	70	20	22	25	31	1.98
590372--590441	23	3.0	23	78	0	68	20	22	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590380--590477	23	4.3	23	77	1	81	17	22	24	35	1.95
590631--590694	32	2.0	32	84	0	83	23	6	20	50	1.71
592930--592976	3	15.7	3	95	0	85	34	2	0	63	1.06
592972--593012	15	2.9	14	89	7	64	60	0	0	39	0.96
592972--593012	14	2.9	15	92	7	68	60	0	0	39	0.96
593420--593462	20	2.2	20	91	0	68	72	6	20	0	1.08
599438--599810	43	8.7	43	86	0	451	22	23	19	34	1.96
599560--599848	43	6.6	44	82	8	177	22	21	19	37	1.95
603599--603648	19	2.9	16	78	16	55	24	16	20	40	1.91
603672--603710	16	2.5	16	88	12	55	30	15	20	33	1.94
603889--603946	25	2.4	25	85	2	73	20	20	22	36	1.95
605742--605897	72	2.1	72	81	9	174	39	19	17	22	1.92
605920--605961	18	2.3	18	84	8	50	28	21	11	38	1.89
606798--606849	27	1.9	27	100	0	104	23	23	15	38	1.92
607035--607085	18	2.8	18	90	0	84	5	7	41	45	1.57
607035--607186	18	8.4	18	73	5	78	10	7	37	44	1.68
607130--607198	24	2.9	24	89	4	68	11	4	36	47	1.60
607143--607216	6	12.3	6	73	11	62	5	4	40	50	1.44
607143--607213	12	6.0	11	79	14	70	5	4	40	49	1.46
607143--607198	24	2.3	24	100	0	112	7	3	41	48	1.48
607539--607733	93	2.1	93	86	3	268	28	5	30	34	1.80
607734--607774	20	1.9	21	85	14	57	41	7	26	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607866--607891	13	2.0	13	100	0	52	7	0	38	53	1.30
607943--608079	61	2.2	61	92	0	220	35	9	5	48	1.60
608158--608309	18	8.3	18	72	11	112	44	4	3	46	1.42
608192--608324	2	67.0	2	70	22	77	45	3	3	48	1.36
608148--608311	55	3.0	54	84	7	231	45	5	3	45	1.44
608148--608361	110	2.0	108	80	10	247	44	6	3	45	1.46
608355--608386	9	3.6	9	91	0	55	34	3	9	53	1.49
608497--608531	18	1.9	18	94	0	61	48	5	2	42	1.41
608486--608535	22	2.3	22	89	6	75	46	4	4	46	1.40
610926--610960	16	2.2	16	90	5	54	60	2	5	31	1.35
612966--613015	20	2.5	20	76	0	55	42	20	16	22	1.89
616565--616600	14	2.6	14	86	0	54	27	38	0	33	1.57
618235--618279	20	2.2	20	88	0	63	33	20	15	31	1.93
618313--618361	21	2.4	21	86	10	66	26	10	16	46	1.78
618421--618458	20	1.9	20	100	0	76	26	36	5	31	1.79
622195--622224	11	2.9	10	90	9	51	26	3	0	70	1.03
623431--623598	79	2.1	78	86	1	237	38	12	20	28	1.89
623476--623636	79	2.0	79	82	0	196	42	10	19	27	1.84
623638--623786	60	2.5	60	89	0	253	36	10	20	32	1.87
626140--626200	2	31.0	2	96	3	115	50	0	0	49	1.00
626937--626987	12	4.3	12	76	18	54	31	0	1	66	1.03
626972--627082	14	8.8	14	64	23	59	45	0	0	54	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626970--627118	30	5.2	27	71	18	90	44	0	1	53	1.14
626945--627048	12	8.6	11	70	21	50	41	0	1	56	1.10
626953--627106	62	2.5	62	91	5	240	42	0	1	55	1.11
627097--627147	19	2.8	18	82	11	61	43	1	0	54	1.11
627098--627159	19	3.3	18	77	11	54	38	1	0	59	1.07
627624--627683	31	1.9	31	89	0	93	45	10	5	40	1.60
629376--629522	60	2.5	60	88	0	240	37	9	20	32	1.85
629818--629966	81	1.8	81	82	2	192	36	10	22	29	1.88
630810--630884	21	3.6	21	92	3	116	21	26	16	36	1.94
630873--631006	20	6.6	19	74	12	72	33	23	16	26	1.96
630873--631006	41	3.3	40	76	10	146	33	23	16	26	1.96
631173--631216	22	2.0	22	90	0	70	20	43	15	20	1.88
631423--631481	20	3.0	20	84	0	73	15	16	22	45	1.84
631619--631673	25	2.2	24	78	15	58	20	9	18	52	1.71
632807--632849	17	2.5	17	88	11	61	30	46	4	18	1.69
633368--633409	20	2.1	20	86	0	57	35	26	21	16	1.94
633379--633423	20	2.3	20	80	3	56	40	20	22	17	1.92
633411--633508	19	5.4	19	80	11	134	46	18	20	14	1.83
633387--633508	38	3.3	38	77	12	137	44	19	21	14	1.86
633515--633594	33	2.4	33	93	0	133	11	18	21	48	1.79
633536--633594	19	3.4	19	77	22	83	13	20	18	47	1.82
633515--633579	14	4.3	14	73	17	58	9	18	21	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633579--633633	20	2.8	19	86	8	74	16	25	23	34	1.95
633599--633658	20	3.1	19	87	4	75	20	16	26	36	1.93
634001--634089	42	2.1	42	85	4	117	22	40	14	22	1.90
635659--635794	19	7.4	19	80	14	178	47	19	19	13	1.81
635646--635816	71	2.4	71	87	4	238	46	18	21	13	1.83
635822--635892	33	2.2	33	86	0	97	16	25	18	39	1.91
635841--635899	19	3.4	19	73	22	74	15	22	16	45	1.84
636367--636440	20	3.7	20	98	0	139	13	22	25	37	1.91
636670--636720	20	2.5	20	96	0	93	19	29	19	31	1.97
637464--637517	24	2.2	24	90	0	81	22	12	20	44	1.85
637692--637716	12	2.1	12	100	0	50	72	0	28	0	0.86
639979--640075	19	5.6	18	69	24	75	43	19	25	11	1.84
639994--640051	14	3.8	14	73	20	53	43	18	27	10	1.83
639979--640072	33	2.8	33	95	0	161	43	19	25	11	1.84
640072--640149	19	4.4	19	74	21	71	11	15	25	47	1.79
640072--640115	18	2.4	18	84	3	61	13	13	27	45	1.81
640084--640198	52	2.2	52	87	4	162	11	20	22	46	1.82
640121--640198	19	4.4	19	79	15	103	12	21	19	46	1.83
640305--640341	14	2.6	14	91	0	65	45	21	0	32	1.52
641709--641789	21	3.9	21	66	6	65	23	20	33	22	1.97
641694--641812	42	2.8	41	81	7	114	22	17	36	23	1.95
642093--642307	94	2.3	94	95	0	385	46	20	13	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644010--644133	19	6.7	19	78	11	132	11	20	22	45	1.83
644056--644136	40	2.0	40	92	2	137	11	24	18	45	1.82
644677--644770	20	4.7	20	82	2	125	20	20	19	40	1.92
644677--644770	41	2.3	40	87	1	125	20	20	19	40	1.92
644654--644814	20	7.9	21	73	10	111	26	19	19	34	1.95
644820--644870	20	2.6	19	84	6	66	23	19	25	31	1.98
645746--645800	23	2.4	23	90	3	85	67	0	27	5	1.12
645749--645836	27	3.3	26	83	10	90	72	0	21	5	1.05
645753--645819	23	2.8	24	75	20	59	71	0	22	5	1.07
646298--646330	6	5.5	6	92	0	57	36	0	60	3	1.12

Tables:   1   2   3   4   5   6   7