genome.fa.s8821.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008821.1 Hibiscus syriacus cultivar Beakdansim tig00111989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1271541

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 725 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656892--656916	3	8.3	3	100	0	50	36	32	0	32	1.58
662535--662618	3	27.7	3	83	11	109	34	0	0	65	0.93
664336--664377	20	2.2	19	86	4	57	33	0	2	64	1.07
664234--664468	120	2.0	116	80	5	265	37	7	8	45	1.63
668050--668083	16	2.1	16	100	0	68	35	20	26	17	1.95
675653--675730	18	4.1	19	77	11	70	78	0	20	1	0.83
675667--675729	24	2.7	24	83	9	76	80	0	19	0	0.70
676080--676128	19	2.8	17	84	9	64	36	8	6	48	1.58
677354--677687	112	3.0	109	84	6	409	36	14	19	28	1.92
677390--677934	124	4.6	112	80	11	442	39	14	18	27	1.90
677599--677934	124	2.7	123	88	3	480	40	15	18	25	1.89
677599--678017	124	3.5	121	81	9	459	41	15	18	24	1.89
678158--678237	3	25.7	3	82	12	99	35	0	0	65	0.93
683149--683190	20	2.1	20	90	0	66	23	42	19	14	1.87
689018--689096	23	3.6	22	85	8	99	22	29	22	25	1.99
689497--689537	20	2.0	21	85	4	57	34	0	9	56	1.32
699135--699167	17	1.9	17	93	0	57	15	0	24	60	1.35
699863--699903	20	2.0	20	95	0	73	21	41	21	14	1.89
706762--706804	22	2.0	22	85	0	59	30	0	13	55	1.39
706811--706855	19	2.4	19	76	0	54	40	2	0	57	1.11
711249--711309	30	2.1	28	87	6	86	37	19	8	34	1.82
717937--718051	6	19.0	6	68	21	53	75	0	15	7	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718009--718051	18	2.4	18	92	3	70	86	0	9	4	0.71
719477--719530	3	17.7	3	82	3	63	35	1	1	61	1.18
733597--733719	48	2.5	49	81	4	140	16	32	27	23	1.96
733840--733874	10	3.5	10	85	14	54	34	25	0	40	1.56
762944--763003	20	3.0	20	97	0	111	16	40	30	13	1.87
786054--786087	18	1.9	18	88	5	52	50	0	20	29	1.49
790530--790568	19	2.1	19	90	0	60	51	7	12	28	1.67
795900--796045	73	2.0	71	96	2	265	44	15	5	34	1.70
799915--799946	2	16.0	2	100	0	64	50	0	0	50	1.00
802182--802216	16	2.2	16	94	0	61	20	20	14	45	1.85
805319--805433	23	5.0	23	73	3	88	20	20	22	36	1.95
805393--805441	24	2.1	23	84	3	62	18	26	20	34	1.95
805954--806039	23	3.7	23	77	1	91	20	22	23	33	1.97
809888--809936	23	2.1	23	96	0	89	22	18	24	34	1.96
815829--815887	3	20.0	3	89	10	95	64	1	0	33	1.04
815829--815885	29	2.0	29	93	6	98	64	1	0	33	1.04
828391--828440	2	25.0	2	91	0	82	48	2	0	50	1.12
830190--830241	16	3.2	16	91	0	86	17	26	13	42	1.86
830508--830554	22	2.1	23	96	4	87	44	0	4	51	1.21
833009--833154	62	2.4	61	84	5	188	34	10	4	50	1.57
833209--833344	18	8.1	18	71	18	107	41	5	7	45	1.56
833218--833368	33	4.6	31	69	21	96	42	5	7	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833365--833395	14	2.2	14	94	0	53	22	0	29	48	1.51
833419--833489	2	34.0	2	73	18	56	47	2	4	45	1.36
833396--833465	34	2.0	36	86	5	99	42	2	5	48	1.41
833419--833489	20	3.5	20	80	5	81	47	2	4	45	1.36
833442--833671	33	7.0	33	68	18	124	46	4	7	40	1.53
833414--833540	51	2.5	51	83	8	145	45	5	7	41	1.54
833577--833644	20	3.8	19	71	26	67	51	1	5	41	1.35
833706--833751	22	2.1	22	96	4	85	52	8	0	39	1.33
833887--833979	2	46.5	2	67	16	50	44	5	2	48	1.37
833867--833919	18	2.8	19	83	8	56	39	5	5	49	1.50
833861--833921	27	2.2	28	85	2	79	40	4	4	49	1.46
833914--833968	22	2.5	22	85	8	67	45	3	3	47	1.38
834004--834816	211	3.8	213	89	4	1139	29	11	7	51	1.67
837110--837146	17	2.2	17	95	0	65	54	0	10	35	1.36
837174--837265	32	2.9	32	81	0	112	41	8	16	33	1.79
837238--837360	65	1.9	65	87	0	183	34	3	21	39	1.70
837437--837486	23	2.2	23	96	0	91	42	12	18	28	1.85
840017--840076	28	2.2	27	77	19	63	28	13	18	40	1.88
849910--849996	23	3.8	23	80	4	95	31	27	17	24	1.97
850650--850706	22	2.6	22	100	0	114	28	26	10	35	1.89
851183--851252	34	2.1	32	89	5	104	21	31	15	31	1.95
851535--851575	21	2.0	21	90	4	66	26	26	21	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851779--851838	29	2.0	31	90	6	97	41	16	6	35	1.75
853605--853645	3	14.0	3	87	5	57	0	29	2	68	1.03
853634--853663	15	2.1	15	93	6	53	3	40	0	56	1.16
854333--854659	161	2.0	165	96	3	617	29	14	28	27	1.95
855079--855120	21	2.0	21	90	0	66	28	26	21	23	1.99
855182--855232	25	2.0	25	100	0	102	19	27	17	35	1.94
855320--855379	29	2.0	31	90	6	97	41	16	6	35	1.75
861345--861412	23	3.0	22	85	8	82	29	23	20	26	1.99
863049--863087	14	2.8	14	84	0	51	35	0	0	64	0.94
863497--863532	15	2.3	16	90	4	56	38	0	0	61	0.96
863497--863532	8	4.6	8	89	6	56	38	0	0	61	0.96
863730--863774	23	2.0	23	86	0	63	44	6	2	46	1.42
863930--863964	12	2.9	12	87	12	54	51	0	0	48	1.00
868520--868601	2	41.0	2	100	0	164	50	0	0	50	1.00
871129--871153	13	1.9	13	100	0	50	16	48	16	20	1.82
871132--871170	13	3.0	13	88	0	51	15	38	20	25	1.92
873720--873828	24	4.5	24	72	4	85	21	15	16	46	1.83
875896--875920	13	1.9	13	100	0	50	16	48	16	20	1.82
878362--878460	24	4.2	24	75	11	87	22	13	17	47	1.81
880504--880528	13	1.9	13	100	0	50	16	40	24	20	1.91
880717--880750	18	1.9	18	88	5	52	41	20	8	29	1.82
881485--881921	218	2.0	218	98	1	849	36	13	19	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882039--882074	18	2.0	18	88	0	54	52	0	16	30	1.44
884278--884506	121	1.9	119	86	7	329	34	8	10	46	1.69
885327--885389	18	3.3	19	82	12	76	49	11	9	30	1.70
891678--891747	28	2.4	28	92	4	113	50	17	12	20	1.78
897017--897053	20	1.9	19	89	10	58	45	10	24	18	1.81
897170--897208	17	2.2	18	86	4	53	46	2	5	46	1.38
897201--897269	36	1.9	36	88	5	104	47	4	0	47	1.21
905647--905927	138	2.0	137	86	2	384	27	13	17	40	1.88
929849--929913	23	2.8	23	79	11	78	24	27	12	35	1.91
930272--930314	20	2.2	20	83	8	52	20	0	11	67	1.22
930339--930371	12	2.6	13	90	4	50	36	15	6	42	1.71
931204--931362	64	2.5	64	90	4	241	30	22	18	28	1.97
936778--936899	21	5.6	21	74	14	88	30	22	20	26	1.98
936793--936899	44	2.4	45	80	13	125	28	22	22	26	1.99
939626--939784	64	2.5	64	87	4	214	30	22	18	28	1.97
942140--942181	18	2.3	18	100	0	84	28	33	21	16	1.95
943430--943475	20	2.3	20	92	0	74	50	13	10	26	1.74
945671--945764	20	4.5	20	75	10	98	25	19	21	34	1.96
945647--945745	44	2.2	44	94	0	171	30	17	17	35	1.93
945646--945725	24	3.5	24	70	13	69	33	15	15	36	1.88
946067--946097	15	2.1	15	93	0	53	45	0	0	54	0.99
947996--948063	21	3.2	21	87	0	100	10	52	17	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954515--954548	15	2.3	15	94	0	59	44	17	2	35	1.64
962025--962074	18	2.9	18	71	20	52	32	4	2	62	1.25
963704--963807	23	4.4	23	78	7	86	20	19	25	34	1.96
963775--963852	24	3.2	24	88	0	111	21	24	20	33	1.97
971624--971678	18	3.0	18	78	10	58	3	16	9	70	1.27
973333--973357	10	2.5	10	100	0	50	0	24	24	52	1.48
973359--973392	18	1.9	18	88	5	52	17	26	29	26	1.98
973376--973437	24	2.6	24	79	2	72	20	24	24	30	1.99
973623--973692	30	2.4	29	95	2	122	52	4	0	42	1.20
984880--985015	67	2.0	68	98	1	265	20	25	22	31	1.98

Tables:   1   2   3   4   5   6   7