genome.fa.s8821.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008821.1 Hibiscus syriacus cultivar Beakdansim tig00111989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1271541

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 725 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991866--991899	14	2.4	14	90	0	50	41	2	0	55	1.15
995294--995355	22	2.9	21	87	4	88	27	25	25	20	1.99
995628--995656	14	2.0	15	93	6	51	13	13	13	58	1.63
1001176--1001208	16	2.1	16	100	0	66	36	0	18	45	1.49
1004375--1004449	37	2.0	37	100	0	150	45	16	10	28	1.80
1008191--1008248	27	2.1	27	87	0	80	32	8	12	46	1.71
1008343--1008382	16	2.5	16	92	8	64	55	0	0	45	0.99
1011395--1011428	18	1.9	17	88	5	50	17	20	29	32	1.96
1018786--1018824	21	1.9	20	84	5	51	35	15	15	33	1.89
1023429--1023465	16	2.3	16	90	0	56	16	10	0	72	1.10
1027052--1027110	8	7.1	8	75	12	57	83	5	11	0	0.81
1027068--1027108	12	3.5	12	78	18	50	87	2	9	0	0.62
1027960--1028026	24	3.0	21	72	19	62	32	10	4	52	1.56
1028621--1028894	107	2.6	106	79	9	317	34	14	10	40	1.81
1028888--1029023	36	3.8	35	79	11	143	33	18	11	36	1.87
1029195--1029367	63	2.7	63	80	9	156	30	9	15	45	1.77
1029215--1029375	66	2.5	63	82	8	182	30	10	14	44	1.80
1029388--1029450	33	1.9	33	93	0	108	30	14	12	42	1.82
1030051--1030127	40	1.9	40	83	0	100	19	36	19	24	1.95
1029906--1030265	134	2.7	134	88	3	510	24	30	19	25	1.98
1030188--1030299	40	2.7	40	72	9	102	25	30	17	25	1.98
1043499--1043643	62	2.3	62	77	5	139	27	15	17	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051096--1051142	15	3.1	15	84	0	67	23	34	14	27	1.94
1054573--1054627	13	4.2	13	83	0	74	30	21	14	32	1.93
1059907--1059936	16	1.9	15	93	6	51	66	0	33	0	0.92
1062710--1062756	12	3.5	13	82	11	51	34	2	0	63	1.06
1062986--1063052	28	2.4	27	77	15	73	14	7	2	74	1.16
1063029--1063061	13	2.5	13	100	0	66	15	0	6	78	0.93
1063023--1063073	22	2.3	23	83	10	70	15	1	3	78	0.99
1063042--1063095	26	2.1	26	82	6	65	16	7	3	72	1.22
1066311--1066347	18	2.2	18	90	9	60	16	8	5	70	1.30
1068630--1068763	65	2.0	68	95	4	247	31	21	20	26	1.98
1077971--1078140	90	1.9	87	92	3	286	37	9	6	46	1.62
1078108--1078176	22	3.3	21	75	13	70	49	1	4	44	1.31
1081087--1081129	20	2.3	18	84	8	50	81	2	13	2	0.89
1081629--1081655	14	1.9	14	100	0	54	40	22	14	22	1.90
1082022--1082122	43	2.3	43	89	0	148	31	31	13	22	1.93
1082046--1082143	43	2.3	43	92	0	160	33	26	16	23	1.95
1082185--1082389	111	1.9	110	83	3	268	37	20	17	24	1.94
1082177--1082444	111	2.5	106	75	10	263	35	22	16	25	1.95
1083176--1083205	13	2.3	13	100	0	60	40	0	6	53	1.27
1084717--1084766	25	2.0	25	88	0	73	14	26	20	40	1.90
1086114--1086294	2	96.0	2	79	13	170	44	1	1	53	1.18
1086480--1086521	13	3.2	13	86	0	57	16	4	4	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1095474--1095587	45	2.6	45	94	2	196	32	11	26	29	1.91
1095832--1095870	17	2.2	18	90	4	62	5	23	0	71	1.05
1096347--1096385	20	2.0	20	89	0	60	28	12	15	43	1.83
1104349--1104389	2	21.0	2	95	5	75	48	0	0	51	1.00
1106046--1106101	21	2.7	21	97	0	103	19	28	28	23	1.98
1108652--1108696	22	2.0	22	91	8	74	57	4	4	33	1.38
1111759--1111783	7	3.6	7	100	0	50	60	24	0	16	1.36
1112049--1112102	27	2.0	27	89	7	83	35	0	24	40	1.55
1113721--1113762	19	2.2	19	91	0	66	26	33	19	21	1.97
1113879--1113917	2	19.5	2	100	0	78	51	0	0	48	1.00
1119533--1119573	18	2.3	18	87	4	57	31	29	2	36	1.71
1123624--1124977	666	2.1	649	87	3	1971	35	12	8	42	1.74
1134777--1134819	21	2.0	21	86	8	61	48	4	6	39	1.51
1134790--1134829	21	1.9	21	85	10	55	52	5	10	32	1.56
1138646--1138725	23	3.6	22	73	13	83	27	25	21	26	1.99
1140949--1140986	19	2.0	19	100	0	76	42	0	26	31	1.56
1143740--1143784	18	2.3	20	88	11	67	4	17	2	75	1.07
1143791--1143825	18	2.0	17	88	5	52	8	14	0	77	0.99
1148925--1148993	34	2.0	34	100	0	138	43	20	2	33	1.67
1157979--1158070	32	2.9	31	83	4	121	27	25	27	20	1.99
1159334--1159386	22	2.4	22	87	3	79	18	24	11	45	1.82
1162831--1163093	34	7.3	35	85	7	255	43	2	9	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1163077--1163110	2	17.5	2	93	6	61	50	0	0	50	1.00
1163044--1163145	53	1.9	52	86	9	145	48	0	5	46	1.26
1163095--1163169	35	2.1	38	87	7	111	46	0	9	44	1.35
1166781--1166811	15	2.1	15	100	0	62	38	12	35	12	1.82
1181986--1182017	15	2.1	15	100	0	64	18	25	12	43	1.85
1183231--1183807	201	2.9	199	84	1	695	32	18	22	27	1.97
1184132--1184357	34	6.5	36	77	11	118	45	3	10	40	1.57
1184218--1184357	34	4.1	34	88	6	196	45	2	10	41	1.54
1184218--1184357	67	2.1	69	89	8	216	45	2	10	41	1.54
1184347--1184428	2	41.5	2	97	2	157	50	0	0	50	1.00
1184512--1184543	9	3.7	9	95	4	57	31	0	0	68	0.90
1184512--1184570	13	4.5	13	78	4	57	25	5	0	69	1.09
1185633--1185693	22	2.8	21	74	16	61	24	11	1	62	1.38
1185634--1185697	21	3.0	21	72	22	60	25	10	1	62	1.37
1185840--1185878	4	9.8	4	100	0	78	23	0	0	76	0.78
1191246--1191296	16	3.1	17	76	18	63	43	0	21	35	1.53
1194165--1194190	13	2.0	13	100	0	52	15	38	0	46	1.46
1195558--1195612	3	16.3	3	85	14	56	0	30	0	69	0.89
1195557--1195607	11	4.8	11	90	4	79	0	29	0	70	0.87
1197533--1197567	13	2.8	13	86	4	54	8	0	22	68	1.16
1201873--1201924	6	8.7	6	100	0	104	17	50	0	32	1.47
1202264--1202319	28	2.0	29	82	10	71	60	0	1	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1212856--1212890	15	2.2	16	90	5	54	25	0	20	54	1.45
1213071--1213172	44	2.3	44	84	3	134	30	19	25	24	1.98
1213075--1213172	22	4.5	22	86	0	115	31	20	23	24	1.98
1216135--1216159	13	1.9	13	100	0	50	24	20	32	24	1.98
1216444--1216497	25	2.2	25	90	3	83	18	5	3	72	1.20
1221881--1221963	23	3.7	23	76	7	82	22	19	25	32	1.97
1229879--1230006	3	42.7	3	93	0	220	63	0	2	34	1.07
1230323--1230980	113	5.9	113	96	1	1182	29	20	12	37	1.90
1231575--1231863	83	3.5	83	95	0	508	35	22	13	28	1.92
1233171--1233203	11	2.9	11	95	4	57	6	12	0	81	0.85
1233151--1233199	18	2.7	18	81	15	64	4	12	0	83	0.77
1245999--1246089	3	30.3	3	95	0	164	63	0	2	34	1.06
1249789--1249848	23	2.7	23	87	10	81	23	21	26	28	1.99
1252511--1252565	28	2.0	27	82	3	65	40	3	3	52	1.36
1262524--1262892	20	18.5	20	85	4	458	34	26	18	20	1.96
1263562--1263608	24	2.0	24	87	8	69	25	14	21	38	1.92
1263777--1263801	12	2.1	12	100	0	50	72	0	28	0	0.86
1266095--1266324	52	4.4	50	80	14	209	47	18	19	14	1.83
1266122--1266400	19	15.7	19	80	14	346	47	17	20	14	1.82
1266161--1266400	71	3.4	71	82	11	346	47	17	19	15	1.82
1266127--1266432	142	2.2	138	91	5	483	47	17	20	15	1.83
1266161--1266422	52	4.9	53	81	14	278	47	17	19	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1266095--1266438	71	4.9	71	75	15	283	46	18	20	15	1.84
1266429--1266530	19	5.6	19	85	12	151	14	23	17	44	1.86
1266637--1266673	14	2.6	14	91	0	65	45	21	0	32	1.52
1268618--1268674	14	3.7	14	77	20	60	45	22	21	10	1.82
1268599--1268691	33	2.8	33	95	0	168	47	21	20	10	1.80
1268562--1268696	19	7.6	19	76	16	128	45	23	19	11	1.82
1268692--1268820	19	7.3	19	75	17	125	8	17	28	45	1.77
1268692--1268783	33	2.8	33	93	3	150	7	18	28	45	1.76
1268864--1269329	92	5.1	93	95	4	860	46	19	12	22	1.83
1268864--1269329	182	2.5	186	95	4	860	46	19	12	22	1.83

Tables:   1   2   3   4   5   6   7