genome.fa.s8893.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008893.1 Hibiscus syriacus cultivar Beakdansim tig00112159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2797279

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1547 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599527--599563	16	2.3	16	90	0	56	43	5	0	51	1.24
601431--601777	138	2.5	138	90	2	552	36	7	6	49	1.57
601799--601841	2	22.5	2	86	9	63	51	2	0	46	1.13
604093--604169	2	40.0	2	92	7	133	50	0	0	49	1.00
605869--605921	21	2.4	23	90	6	83	15	22	28	33	1.94
608165--608237	36	2.0	36	97	0	137	41	6	21	30	1.79
610012--610118	24	4.5	24	80	6	112	22	12	15	49	1.78
610012--610118	48	2.2	49	83	9	132	22	12	15	49	1.78
617942--617989	20	2.5	20	86	3	62	52	4	12	31	1.58
621097--621129	16	2.0	17	88	5	50	39	0	24	36	1.56
622073--622107	15	2.3	15	95	0	61	62	17	5	14	1.49
623032--623078	21	2.2	21	88	0	67	17	44	4	34	1.68
625287--625502	108	2.0	108	100	0	432	40	13	11	34	1.81
631053--631078	2	13.0	2	100	0	52	50	0	0	50	1.00
631244--631394	81	1.9	81	94	0	266	43	17	8	29	1.79
633464--633538	10	7.7	10	69	19	52	58	21	10	9	1.59
633468--633532	16	4.1	16	86	5	87	58	23	10	7	1.57
634613--634654	14	3.0	14	89	0	66	54	21	14	9	1.68
637338--637854	213	2.4	212	81	3	560	36	18	17	26	1.94
644159--644192	6	5.7	6	100	0	68	50	17	0	32	1.47
666483--666512	11	2.7	11	89	0	51	60	0	16	23	1.36
668583--668627	23	2.0	23	82	8	56	33	2	0	64	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669311--669422	23	5.1	23	69	21	80	71	0	4	23	1.10
669374--669431	15	3.7	15	76	19	64	77	0	3	18	0.91
669353--669425	36	2.1	35	82	9	89	78	1	4	16	0.98
669375--669431	20	2.8	20	77	12	55	77	0	3	19	0.92
669359--669425	25	2.8	24	81	9	73	77	0	4	17	0.93
670636--670674	7	5.7	7	84	6	53	71	0	2	25	0.98
670766--670948	36	5.2	36	81	12	227	46	6	2	44	1.42
670799--670854	29	1.9	29	96	0	103	44	5	5	44	1.49
670766--670890	65	1.9	65	96	0	232	46	5	4	44	1.45
671693--672694	85	11.8	85	84	1	1146	25	17	21	35	1.95
671779--672694	256	3.6	256	86	1	1194	25	18	21	35	1.95
673286--673327	21	2.0	21	100	0	84	52	0	33	14	1.42
673881--674078	96	2.1	97	86	1	281	30	19	16	33	1.94
677204--677230	6	4.5	6	100	0	54	55	0	0	44	0.99
677350--677458	14	7.7	14	69	22	52	73	0	4	21	1.07
677398--677474	31	2.5	31	83	10	86	75	0	5	19	0.99
677396--677455	23	2.6	22	82	17	61	76	0	3	20	0.92
677347--677481	19	7.1	18	66	22	62	73	0	5	20	1.09
677421--677468	12	3.8	12	84	13	60	77	0	2	20	0.88
678661--678703	3	13.7	3	81	18	52	72	0	0	27	0.85
678668--678703	9	3.8	10	85	14	58	72	0	0	27	0.85
678661--678700	16	2.5	16	88	12	64	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678651--678709	26	2.4	25	82	5	75	71	6	0	22	1.09
678743--678846	48	2.2	47	83	10	133	46	5	1	46	1.38
678856--678992	38	3.6	38	84	8	181	43	4	5	45	1.47
678856--678966	36	3.0	35	84	12	143	43	3	4	48	1.40
680388--680415	8	3.5	8	100	0	56	35	10	0	53	1.36
682549--682592	2	22.5	2	95	4	81	50	0	0	50	1.00
683819--684006	5	38.0	5	95	2	335	60	0	0	38	1.01
686368--686418	15	3.4	15	88	0	84	9	66	15	7	1.43
690450--690506	26	2.2	26	93	0	96	50	7	10	31	1.63
698951--699010	27	2.2	29	80	17	83	46	5	13	35	1.65
701953--701984	12	2.7	12	95	0	55	68	9	6	15	1.36
702479--702595	39	3.0	39	78	9	114	2	37	7	52	1.44
706092--706135	23	1.9	23	85	0	61	29	22	29	18	1.97
708992--709030	18	2.2	18	100	0	78	46	5	15	33	1.68
712068--712107	20	2.0	20	90	0	62	15	15	25	45	1.84
712129--712195	24	2.8	25	76	13	77	44	25	0	29	1.54
712131--712264	54	2.6	52	85	11	179	43	23	2	30	1.66
712166--712256	30	3.2	29	67	27	70	42	26	3	27	1.71
712145--712264	54	2.3	54	89	5	183	41	25	2	30	1.68
712269--712393	27	4.7	26	69	15	76	56	20	3	20	1.56
712263--712473	53	3.9	53	84	9	241	54	19	4	21	1.61
712433--712495	30	2.1	30	93	0	108	53	20	6	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712380--712494	30	4.1	29	72	17	107	53	19	6	21	1.67
718650--718936	98	2.9	98	97	0	529	44	8	10	36	1.68
719095--719135	21	2.0	21	100	0	82	24	19	12	43	1.85
719277--719326	23	2.2	23	85	7	66	42	6	20	32	1.76
719417--719513	3	31.7	3	89	4	149	34	4	0	61	1.15
719595--719752	21	7.8	20	72	7	86	38	25	16	19	1.92
719719--719947	20	11.5	20	80	6	223	37	24	18	19	1.94
720622--720668	24	2.0	24	87	8	69	25	14	21	38	1.92
723132--723477	33	9.9	34	77	16	247	45	18	22	13	1.84
723113--723344	67	3.4	67	78	13	242	45	19	21	13	1.84
723146--723455	19	17.4	19	75	19	303	46	18	21	13	1.84
723174--723386	52	4.1	53	98	0	385	45	17	23	14	1.84
723355--723417	14	4.7	13	75	13	56	46	19	23	11	1.82
723343--723426	40	2.1	40	100	0	168	45	16	25	13	1.83
723291--723477	92	2.0	92	100	0	374	45	17	23	13	1.83
723132--723477	52	6.6	52	79	14	238	45	18	22	13	1.84
723484--723599	53	2.2	53	98	1	225	13	24	18	43	1.86
723502--723599	19	5.4	19	84	13	143	14	22	17	45	1.84
723702--723750	14	3.6	14	81	5	57	51	20	0	28	1.48
725530--725644	19	6.6	19	75	18	106	46	23	20	10	1.81
725566--725622	14	3.7	14	77	20	60	45	22	21	10	1.82
725547--725639	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725640--725768	19	7.3	19	75	17	125	9	16	28	45	1.78
725640--725731	33	2.8	33	93	3	150	8	17	28	45	1.78
725816--726189	185	2.0	185	96	3	693	46	19	12	21	1.83
725816--726189	93	4.1	93	96	3	695	46	19	12	21	1.83
727894--727982	14	5.7	14	73	21	79	43	22	24	8	1.82
727886--727999	33	3.5	33	97	2	221	46	20	23	9	1.80
727908--728004	19	5.7	19	70	23	90	44	21	23	10	1.83
728013--728134	33	3.4	35	83	10	149	10	23	19	45	1.81
728016--728072	14	3.7	14	70	20	51	8	22	22	45	1.80
728057--728132	21	3.8	21	79	10	95	11	23	17	47	1.80
728210--728280	33	2.2	33	89	0	106	47	16	22	12	1.80
728460--728513	22	2.5	22	81	0	72	20	16	38	24	1.92
728661--728853	20	9.6	20	83	4	219	18	20	26	34	1.96
728840--728922	21	4.0	21	71	6	69	26	15	24	33	1.95
742023--742090	1	68.0	1	76	0	55	86	0	10	2	0.67
742023--742090	7	9.6	7	83	13	68	86	0	10	2	0.67
742023--742076	10	5.2	10	84	8	72	88	0	7	3	0.61
742029--742090	8	7.4	8	82	7	61	87	0	9	3	0.66
743220--744033	83	9.9	83	91	2	1225	27	14	22	35	1.93
743219--744033	165	4.9	165	92	2	1275	27	13	22	35	1.93
744706--744750	24	1.9	23	82	13	56	48	6	26	17	1.72
744684--745324	113	5.6	112	92	4	1045	37	11	20	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744681--745324	230	2.8	227	92	4	1075	37	11	20	29	1.89
745571--745671	3	33.7	3	93	0	166	34	2	0	62	1.11
746899--746933	18	1.9	18	88	0	52	37	2	0	60	1.12
748066--748254	98	1.9	98	97	0	360	44	8	10	36	1.70
752127--752160	11	3.1	11	86	0	50	14	14	20	50	1.78
752155--752185	16	1.9	16	100	0	62	29	12	19	38	1.89
756583--756638	21	2.7	21	97	0	103	8	19	14	57	1.63
756626--756744	52	2.2	52	95	2	211	9	17	22	50	1.74
757710--757760	20	2.5	20	96	0	93	37	25	17	19	1.94
758217--758255	13	2.9	13	88	3	51	35	10	10	43	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13