genome.fa.s8893.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008893.1 Hibiscus syriacus cultivar Beakdansim tig00112159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2797279

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1547 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1436598--1436622	13	1.9	13	100	0	50	64	20	0	16	1.30
1440013--1440079	20	3.3	20	89	0	98	32	31	19	16	1.94
1442011--1442129	36	3.3	35	79	4	139	29	21	12	36	1.90
1445590--1445683	14	6.4	14	70	19	50	35	2	2	60	1.20
1445987--1446020	4	8.2	4	93	6	59	23	2	0	73	0.97
1447175--1447207	5	6.6	5	92	0	57	21	0	0	78	0.75
1449097--1449140	18	2.4	18	88	7	63	79	6	13	0	0.92
1449095--1449153	19	3.3	18	83	6	75	79	6	11	1	0.99
1449755--1449831	22	3.5	22	92	0	127	37	25	14	22	1.92
1450582--1450713	37	3.6	36	81	6	149	28	20	13	37	1.91
1450678--1450719	21	2.0	21	85	0	57	23	21	11	42	1.86
1450723--1451782	106	10.0	106	91	0	1647	33	25	18	22	1.96
1453048--1453214	65	2.6	64	72	17	155	34	3	2	59	1.28
1453104--1453203	6	15.1	7	70	24	58	35	2	1	62	1.14
1453105--1453148	19	2.2	21	84	8	56	34	2	0	63	1.07
1453110--1453184	25	2.9	25	73	22	73	30	2	1	65	1.15
1453178--1453202	2	12.5	2	100	0	50	48	0	0	52	1.00
1453472--1453504	2	16.5	2	100	0	66	48	0	0	51	1.00
1471579--1471659	3	27.0	3	82	5	92	39	0	1	59	1.05
1472950--1472995	13	3.6	13	72	16	51	28	0	4	67	1.10
1472947--1473015	30	2.3	28	81	16	77	33	0	2	63	1.09
1472948--1473014	15	5.0	13	72	18	50	32	0	2	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1473082--1473401	145	2.2	142	78	11	312	40	6	5	46	1.54
1475576--1475624	2	25.0	2	95	4	91	51	0	0	48	1.00
1479803--1479831	12	2.4	12	100	0	58	31	17	24	27	1.97
1481819--1481856	20	1.9	20	88	0	58	26	34	26	13	1.93
1481841--1481903	19	3.2	19	84	11	65	20	31	28	19	1.97
1482887--1482964	37	2.1	37	90	0	120	43	17	16	21	1.88
1483405--1483448	23	2.0	23	81	4	54	50	11	2	36	1.51
1484865--1484894	16	1.9	16	93	6	53	43	0	13	43	1.43
1486080--1486220	72	2.0	72	94	0	246	25	22	21	30	1.99
1488814--1488867	23	2.3	24	81	9	67	44	1	1	51	1.22
1488982--1489062	26	3.4	25	80	11	80	53	1	0	45	1.08
1498505--1498543	14	2.8	14	88	0	60	25	20	28	25	1.99
1503331--1503462	42	3.2	42	77	10	146	34	25	15	25	1.95
1503371--1503437	20	3.4	19	76	10	64	32	31	11	23	1.91
1504284--1504315	12	2.7	12	95	0	55	59	3	6	31	1.38
1505074--1505139	27	2.4	27	97	0	123	27	19	15	37	1.92
1507976--1508150	36	4.7	38	76	11	132	46	5	3	44	1.42
1508119--1508209	30	3.1	28	82	14	105	43	4	3	48	1.39
1508748--1508809	26	2.3	26	77	2	70	50	30	12	6	1.66
1509803--1509856	5	11.0	5	74	18	51	16	1	3	77	1.00
1509803--1509858	10	5.8	9	80	12	58	16	1	3	78	0.97
1511574--1511614	19	2.0	20	86	9	57	12	9	2	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511577--1511621	19	2.3	19	80	3	54	13	13	4	68	1.35
1514726--1514770	23	2.0	23	82	8	56	40	20	15	24	1.91
1514997--1515551	84	6.7	83	77	5	552	29	24	22	24	1.99
1514997--1515612	165	3.7	165	90	1	885	30	23	21	24	1.99
1516327--1516427	32	3.2	31	83	10	125	44	3	2	48	1.36
1516479--1516504	13	2.0	13	100	0	52	15	0	7	76	0.99
1516967--1517028	26	2.3	26	77	2	70	50	30	12	6	1.66
1518042--1518080	5	7.6	5	82	5	51	17	2	2	76	1.01
1518030--1518086	11	5.3	11	79	12	57	17	1	3	77	1.00
1519664--1519719	21	2.7	20	76	17	60	53	0	10	35	1.36
1519760--1519791	17	1.9	17	93	6	57	40	6	0	53	1.26
1523158--1523209	27	1.9	27	92	0	86	42	1	15	40	1.58
1523144--1523263	63	1.9	64	89	1	188	36	1	16	45	1.58
1525468--1525805	106	3.2	105	82	7	405	54	11	3	30	1.53
1527723--1527748	2	13.0	2	100	0	52	50	0	0	50	1.00
1534267--1534309	21	2.0	21	86	0	59	32	25	23	18	1.97
1534665--1534704	14	2.7	15	80	3	55	42	12	12	32	1.80
1534839--1534907	25	2.8	25	86	0	102	21	26	23	28	1.99
1541092--1541134	21	2.0	21	86	0	59	30	27	25	16	1.97
1541489--1541528	14	2.7	15	80	3	55	42	12	12	32	1.80
1541663--1541731	25	2.8	25	93	0	120	17	26	26	30	1.97
1546304--1546348	21	2.1	21	83	0	54	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551523--1551692	32	5.4	32	78	16	201	30	18	17	33	1.94
1551484--1551712	63	3.7	63	93	1	381	32	17	17	33	1.93
1552480--1552636	64	2.5	64	78	10	169	26	20	21	31	1.98
1554033--1554080	24	2.0	24	100	0	96	45	25	4	25	1.71
1554284--1554329	23	2.0	23	86	0	65	32	26	23	17	1.97
1561517--1561544	14	2.0	14	100	0	56	35	21	35	7	1.81
1564426--1564477	22	2.3	23	90	6	79	65	7	7	19	1.43
1564713--1564745	15	2.2	15	94	0	57	60	0	0	39	0.97
1566621--1566655	2	18.0	2	88	5	54	51	2	0	45	1.16
1567519--1567553	17	1.9	17	88	11	52	2	37	0	60	1.12
1568694--1569009	150	2.1	150	95	1	573	26	17	21	34	1.96
1568977--1569021	23	2.0	23	86	0	63	20	26	26	26	1.99
1570628--1571077	134	3.4	134	86	0	605	34	19	15	30	1.93
1570882--1571299	221	1.9	220	81	3	500	32	22	17	27	1.96
1571103--1571742	134	4.8	133	83	4	793	31	21	17	29	1.96
1570630--1571560	489	1.9	489	82	3	1165	32	20	16	30	1.95
1584271--1584363	24	3.9	24	95	0	168	29	25	25	19	1.99
1584439--1584508	30	2.3	30	95	0	122	32	20	5	41	1.75
1585929--1585969	15	2.7	15	100	0	82	36	0	0	63	0.95
1586468--1590031	4	889.5	4	86	3	4271	45	22	4	27	1.71
1590029--1590053	6	4.2	6	100	0	50	36	48	16	0	1.46
1595313--1595337	5	5.0	5	100	0	50	20	20	40	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1598237--1598271	13	2.8	12	91	8	52	60	2	2	34	1.26
1600307--1600355	3	16.0	3	91	4	80	65	0	2	32	1.04
1600310--1600354	22	2.0	22	95	0	81	66	0	2	31	1.04
1601315--1601431	60	2.0	60	81	6	139	23	7	16	52	1.69
1608960--1609063	45	2.3	45	75	15	108	46	1	2	49	1.28
1610255--1610306	24	2.2	24	100	0	104	26	17	23	32	1.96
1614423--1614829	201	2.0	204	98	1	793	26	20	25	28	1.99
1616362--1616479	23	5.3	21	82	7	94	30	27	16	25	1.97
1616375--1616480	23	4.7	23	84	9	139	29	27	18	24	1.98
1616375--1616480	46	2.4	45	89	9	155	29	27	18	24	1.98
1619205--1619235	2	15.5	2	100	0	62	51	0	0	48	1.00
1619530--1619603	31	2.4	31	79	2	85	39	9	12	39	1.75
1637809--1637847	2	19.5	2	100	0	78	48	0	0	51	1.00
1641884--1641930	20	2.3	21	85	3	69	21	2	6	70	1.20
1641957--1641999	21	2.0	21	86	0	59	51	0	6	41	1.29
1648630--1648670	21	1.9	22	85	14	59	46	0	0	53	1.00
1648643--1648705	30	2.2	28	85	5	81	47	1	3	47	1.27
1649341--1649380	14	3.1	13	82	10	55	60	0	0	40	0.97
1650821--1650952	3	44.3	3	89	7	198	62	0	3	34	1.10
1651274--1651814	224	2.4	225	95	0	958	28	19	14	37	1.91
1651274--1651808	113	4.8	113	96	1	950	28	19	14	37	1.91
1652673--1653154	81	5.9	81	93	2	788	33	22	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1658936--1659304	185	2.0	184	98	1	713	21	21	17	39	1.93
1665571--1665610	14	3.1	13	82	10	55	60	0	0	40	0.97
1665584--1665632	17	2.8	17	84	3	53	46	0	0	53	1.00
1667069--1667133	3	21.3	3	93	3	112	64	0	1	33	1.03
1675638--1675686	21	2.4	20	77	12	55	51	6	0	42	1.27
1678940--1679126	93	2.0	93	97	0	356	40	5	2	51	1.39
1678940--1679166	93	2.4	93	89	5	309	42	5	2	48	1.40
1680231--1680323	21	4.6	20	78	4	96	38	18	24	18	1.92
1680228--1680323	41	2.3	41	98	0	183	39	17	23	18	1.92
1680231--1680323	20	4.6	20	78	4	96	38	18	24	18	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13