genome.fa.s8983.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008983.1 Hibiscus syriacus cultivar Beakdansim tig00112347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1350231

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185465--185489	2	12.5	2	100	0	50	52	0	0	48	1.00
188290--188328	5	7.8	5	94	0	69	0	38	2	58	1.12
188290--188337	15	3.2	15	88	5	62	2	37	2	58	1.22
188947--189004	20	2.6	22	86	10	75	31	18	22	27	1.97
193182--193213	14	2.3	14	100	0	64	50	28	15	6	1.68
193223--193315	40	2.3	41	83	9	118	36	15	12	35	1.85
194326--194359	2	17.0	2	100	0	68	50	0	0	50	1.00
194593--194649	22	2.6	22	91	5	89	33	40	1	24	1.66
202048--202078	9	3.6	9	95	4	55	83	0	0	16	0.64
204728--204766	12	3.2	12	81	0	51	5	41	7	46	1.55
204729--204775	24	2.0	24	86	0	67	4	42	8	44	1.54
204735--204785	24	2.1	24	81	0	57	9	41	9	39	1.71
205281--205324	19	2.4	18	77	7	54	2	45	0	52	1.13
205619--205662	22	2.0	23	81	4	54	47	2	6	43	1.42
210926--210961	15	2.3	16	90	4	56	33	2	2	61	1.25
210952--210991	21	2.0	20	90	5	62	42	7	5	45	1.54
217832--217881	24	2.1	24	85	7	66	60	12	2	26	1.43
223987--224256	135	2.0	134	94	0	477	39	14	11	34	1.83
226902--226976	23	3.3	23	84	0	105	21	25	22	30	1.99
226914--226987	23	3.2	22	77	7	76	20	25	22	31	1.98
226980--227031	24	2.2	24	92	0	86	28	28	19	23	1.98
229707--229791	41	2.1	41	97	0	161	40	8	24	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236965--237035	33	2.2	33	97	0	133	40	15	19	23	1.90
243518--243549	16	2.0	16	93	0	55	46	18	21	12	1.82
245831--245876	3	15.3	3	86	0	65	4	28	0	67	1.10
247902--248159	120	2.2	120	84	0	338	18	24	27	29	1.98
248577--248615	2	19.5	2	100	0	78	48	0	0	51	1.00
249511--249578	2	34.0	2	100	0	136	50	0	0	50	1.00
250685--250745	28	2.1	30	87	9	90	44	1	6	47	1.39
250805--250848	14	3.3	14	93	6	74	31	4	0	63	1.14
252078--252103	13	2.0	13	100	0	52	15	7	0	76	0.99
256010--256284	99	2.8	99	89	0	397	33	15	18	32	1.92
257516--257981	86	5.4	86	87	2	605	29	22	23	24	1.99
258037--258516	200	2.4	200	83	1	602	33	18	19	27	1.96
258796--258920	33	3.6	34	82	11	139	43	3	10	43	1.54
258796--258953	38	4.4	36	78	14	157	41	3	10	44	1.57
260294--260338	23	2.0	23	81	0	54	11	2	6	80	0.99
261906--261950	24	1.9	23	86	13	65	37	6	13	42	1.70
262339--262400	28	2.3	27	86	10	92	43	0	16	40	1.48
262593--262646	12	4.8	12	77	13	60	18	14	20	46	1.84
262604--262643	21	1.9	21	89	0	62	17	15	20	47	1.83
265722--265748	14	1.9	14	100	0	54	22	22	7	48	1.75
270686--270740	22	2.5	22	96	0	101	25	12	25	36	1.91
271357--271407	14	3.6	14	87	12	77	0	13	7	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275448--275474	2	13.5	2	100	0	54	51	0	0	48	1.00
275603--275647	12	3.7	12	81	3	54	66	0	4	28	1.11
275604--275652	24	2.0	24	92	0	80	67	0	4	28	1.09
276210--276303	37	2.5	37	84	0	107	35	11	12	40	1.80
277600--277641	20	2.1	20	86	0	57	30	30	7	30	1.84
277647--277716	20	3.5	19	77	11	68	31	25	14	28	1.95
277707--277781	20	3.8	20	78	7	73	29	25	9	36	1.87
278744--278790	24	2.0	24	86	0	67	29	21	14	34	1.93
284158--284223	21	3.1	21	84	0	87	21	16	39	22	1.92
284226--284273	21	2.3	21	92	0	78	33	8	37	20	1.83
284410--284451	12	3.5	12	83	0	57	66	2	2	28	1.16
284831--284927	42	2.3	42	90	0	149	16	19	34	29	1.94
286067--286151	20	4.2	20	80	1	80	51	16	11	20	1.75
286711--286781	20	3.4	21	73	9	65	26	15	25	32	1.95
286742--286802	21	2.9	20	80	9	68	26	11	31	31	1.91
286722--286818	42	2.4	40	83	11	117	23	14	30	30	1.94
287297--287407	59	1.9	59	86	3	161	31	14	18	36	1.90
291408--291469	2	31.0	2	100	0	124	50	0	0	50	1.00
292334--292409	23	3.4	23	87	5	104	55	11	11	21	1.68
292503--293018	263	2.0	263	95	1	930	50	13	7	28	1.70
297632--297679	19	2.6	20	81	15	59	31	22	22	22	1.99
309551--309581	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314340--314400	31	2.0	31	86	0	86	55	1	0	42	1.09
314498--314531	2	17.0	2	93	0	59	47	0	0	52	1.00
315904--315940	3	12.7	3	88	5	58	67	0	0	32	0.91
315904--315931	14	2.0	14	100	0	56	64	0	0	35	0.94
315898--315934	17	2.2	17	95	0	65	62	0	0	37	0.96
316092--316898	76	10.6	76	96	1	1478	35	19	21	24	1.96
316884--316946	31	2.0	31	100	0	126	25	20	28	25	1.99
316808--317000	102	1.8	106	93	5	340	31	19	23	25	1.98
317872--317926	22	2.5	22	90	0	92	41	14	10	32	1.81
318289--318550	54	4.9	54	92	1	429	24	22	14	38	1.92
323200--323252	17	2.9	18	86	8	72	5	16	0	77	0.96
323239--323292	26	2.0	26	96	3	99	3	16	11	68	1.33
323579--323606	2	14.0	2	100	0	56	50	0	0	50	1.00
328578--328638	31	2.0	31	86	0	86	55	1	0	42	1.09
328735--328772	2	19.0	2	94	0	67	47	0	0	52	1.00
330124--330167	2	24.0	2	78	17	51	52	0	0	47	1.00
330150--330188	3	12.7	3	89	5	60	66	0	0	33	0.92
330125--330188	16	3.8	16	83	10	67	59	0	0	40	0.97
330343--331150	76	10.6	76	97	1	1487	35	19	21	24	1.96
331136--331198	31	2.0	31	100	0	126	25	20	28	25	1.99
331060--331252	102	1.8	106	93	5	340	31	19	23	25	1.98
332127--332181	22	2.5	22	90	0	92	41	14	10	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332544--332806	54	4.9	54	94	0	447	23	22	15	38	1.92
337453--337507	17	3.2	17	89	2	65	3	18	0	78	0.90
337465--337507	17	2.5	17	96	0	77	0	23	0	76	0.78
337491--337544	26	2.0	26	96	3	99	3	16	11	68	1.33
337990--338053	3	20.7	3	90	6	101	65	0	0	34	0.93
337990--338048	16	3.8	16	97	2	111	64	0	0	35	0.94
346076--346133	21	2.7	22	86	5	82	17	29	22	31	1.96
358773--358836	24	2.6	24	77	2	74	29	14	12	43	1.81
361344--361376	16	2.1	16	100	0	66	36	6	18	39	1.75
362054--362194	64	2.2	63	81	9	162	32	18	23	25	1.97
362182--362239	20	2.7	20	86	10	71	29	20	24	25	1.99
363047--363124	18	4.3	18	95	0	138	17	20	33	28	1.96
375739--376088	168	2.1	168	86	1	486	28	7	31	32	1.85
378623--378679	24	2.4	24	97	2	107	40	21	14	24	1.90
386890--386926	20	1.9	19	89	10	58	45	10	24	18	1.81
387078--387109	14	2.3	14	94	0	55	62	0	0	37	0.95
388972--389161	93	2.0	95	87	2	276	46	19	17	16	1.84
391014--391064	21	2.6	19	82	14	59	58	1	5	33	1.33
400121--400156	18	2.0	18	94	0	63	16	19	33	30	1.94
402457--402606	19	7.9	18	75	13	99	80	1	13	5	0.95
402460--402546	26	3.3	26	77	13	81	81	0	12	5	0.85
402457--402586	29	4.4	29	77	13	108	80	0	14	4	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402460--402580	37	3.3	37	70	21	67	80	0	15	4	0.87
402457--402569	9	12.1	9	77	14	104	81	0	14	4	0.84
402457--402602	10	13.7	10	74	15	62	80	1	13	4	0.93
403884--404184	108	2.8	107	90	1	458	28	13	28	28	1.95
403884--404222	55	6.3	55	85	3	438	28	13	28	29	1.94
404925--404967	17	2.5	17	96	0	77	11	46	27	13	1.78
407895--407934	21	1.9	21	85	10	55	50	2	5	42	1.37
407957--407987	2	15.5	2	100	0	62	51	0	0	48	1.00
413735--413850	4	29.0	4	91	0	133	25	9	25	40	1.85
413735--413850	16	7.2	16	92	0	187	25	9	25	40	1.85

Tables:   1   2   3   4   5   6   7