genome.fa.s8983.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008983.1 Hibiscus syriacus cultivar Beakdansim tig00112347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1350231

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
869969--870025	19	3.2	19	70	25	52	14	22	38	24	1.91
873307--873348	21	2.0	21	95	0	75	26	28	21	23	1.99
873462--873543	34	2.4	35	88	8	132	20	28	29	21	1.98
875804--876064	47	5.6	47	92	3	384	33	19	7	39	1.80
875965--876040	25	3.2	25	60	17	61	30	15	9	44	1.78
876134--876248	61	1.9	61	88	0	176	28	26	19	25	1.98
877225--877287	29	2.1	30	82	2	74	33	20	7	38	1.82
883770--883838	34	2.0	34	88	0	102	15	13	36	34	1.87
888877--888933	15	3.7	15	81	9	78	21	33	28	17	1.96
888891--888945	17	3.4	17	80	10	69	21	32	27	18	1.96
888877--888945	32	2.2	32	97	0	129	21	31	27	18	1.97
891935--891979	18	2.5	20	75	20	53	42	4	0	53	1.21
892500--892589	31	2.9	31	80	15	107	43	7	7	41	1.62
897903--898014	59	1.9	59	94	5	199	33	15	8	42	1.76
898890--899074	8	21.6	8	66	17	54	24	3	5	65	1.31
898896--898960	9	7.3	9	74	6	53	20	4	4	70	1.23
899078--899105	12	2.3	12	100	0	56	32	7	0	60	1.24
911104--911229	61	2.1	61	83	3	155	34	12	14	38	1.84
914671--914721	22	2.3	23	76	10	61	62	11	15	9	1.53
915333--915367	2	17.5	2	100	0	70	51	0	0	48	1.00
915544--915657	60	1.9	60	85	8	162	29	15	18	35	1.92
917660--917706	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
918290--918659	47	7.9	47	85	0	490	22	20	11	45	1.83
918445--918625	27	7.5	26	68	25	130	21	22	10	45	1.82
918472--918645	20	7.7	20	66	25	71	21	24	10	42	1.85
920666--920727	17	3.6	17	71	4	61	45	8	16	30	1.76
920655--920756	35	2.9	35	97	0	186	41	11	15	31	1.83
920655--920743	18	5.1	18	67	5	74	39	12	15	32	1.85
922387--922448	24	2.6	24	92	0	97	22	20	22	33	1.97
927708--927758	21	2.4	21	93	0	93	23	31	21	23	1.98
929472--929841	47	7.9	47	88	3	496	21	18	13	45	1.84
929566--929639	20	3.3	20	70	22	67	18	25	14	40	1.89
929461--929840	141	2.7	140	90	2	557	21	19	13	46	1.84
930513--930551	20	2.0	19	90	5	60	30	25	10	33	1.89
932704--933101	195	2.0	194	97	2	643	27	21	15	36	1.93
936644--936685	21	2.0	21	100	0	84	28	14	9	47	1.75
936674--936750	33	2.4	32	86	4	118	35	9	11	44	1.73
937157--937197	17	2.4	17	95	0	73	31	12	4	51	1.60
937666--937708	2	21.5	2	100	0	86	48	0	0	51	1.00
938545--938599	20	2.9	18	80	17	58	25	1	1	70	1.06
944008--944034	14	1.9	14	100	0	54	44	0	3	51	1.19
946103--946292	65	2.9	65	88	0	263	30	20	16	32	1.95
952052--952134	21	3.8	21	72	13	69	30	20	22	26	1.98
952087--952157	23	3.2	22	71	15	65	28	19	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952060--952177	44	2.7	44	89	3	177	29	20	22	27	1.98
954422--954456	13	2.6	14	86	13	56	42	8	5	42	1.59
954619--954776	65	2.4	65	86	4	212	32	21	15	30	1.95
956819--956887	23	3.0	22	76	16	61	14	2	7	75	1.13
966309--966377	30	2.2	32	78	14	74	27	10	5	56	1.55
966377--966449	29	2.4	29	84	13	85	21	0	4	73	0.99
966377--966432	16	3.4	16	83	13	69	21	0	3	75	0.96
966367--966452	13	6.6	12	72	23	59	22	1	3	73	1.05
968623--968670	18	2.7	18	100	0	96	47	0	4	47	1.21
970417--970456	21	2.0	20	86	13	57	17	12	7	62	1.52
973406--973469	2	32.0	2	100	0	128	50	0	0	50	1.00
973774--973881	7	14.4	7	81	15	94	80	0	13	4	0.91
982608--983022	109	3.8	110	89	1	580	29	9	19	41	1.83
983101--983197	42	2.3	42	78	5	108	26	17	22	32	1.96
982921--983470	296	1.9	296	90	1	879	30	14	18	36	1.90
983486--983657	52	3.2	52	79	12	211	29	10	18	42	1.83
984035--984121	23	3.8	23	78	6	86	34	24	19	21	1.96
984117--984178	21	3.0	21	78	0	61	38	20	12	27	1.90
984123--984203	42	1.9	42	87	0	117	35	19	14	29	1.92
988376--988487	23	5.0	23	81	6	104	33	25	19	20	1.96
988402--988501	23	4.6	21	77	9	92	34	26	20	20	1.96
1012390--1012462	32	2.3	32	80	0	92	15	31	30	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015439--1015469	13	2.3	14	94	5	55	25	29	29	16	1.96
1015439--1015469	7	4.6	7	92	8	55	25	29	29	16	1.96
1015458--1015500	22	2.0	22	95	0	77	11	23	46	18	1.82
1015470--1015516	17	2.8	17	96	0	85	8	19	51	21	1.73
1015458--1015516	17	2.9	20	76	23	61	11	20	47	20	1.81
1015528--1015578	19	2.7	19	84	6	68	27	27	25	19	1.99
1022673--1022715	5	8.2	5	85	10	59	4	20	53	20	1.63
1022673--1022717	15	2.8	16	86	10	65	6	20	53	20	1.67
1022712--1022779	9	7.1	9	76	12	64	30	29	26	13	1.94
1022712--1022779	19	3.6	19	79	15	70	30	29	26	13	1.94
1023959--1023991	2	16.5	2	100	0	66	51	0	0	48	1.00
1027719--1027773	16	3.3	16	82	12	58	32	9	0	58	1.30
1027720--1027767	23	2.0	24	84	4	62	35	6	0	58	1.23
1029033--1029098	29	2.3	29	94	5	118	34	18	18	28	1.94
1029521--1029571	22	2.3	22	100	0	102	35	45	0	19	1.51
1033990--1034136	60	2.4	61	78	7	149	32	19	3	44	1.67
1035800--1035867	20	3.4	19	75	4	64	19	22	26	32	1.97
1040168--1040208	20	2.0	20	86	9	57	9	21	31	36	1.86
1047705--1047766	30	2.1	30	100	0	124	38	32	9	19	1.84
1050123--1050225	54	1.9	54	84	4	136	32	19	7	40	1.80
1054258--1054302	19	2.4	19	80	0	54	37	26	8	26	1.86
1054404--1054442	20	2.0	20	100	0	78	46	25	15	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054565--1054615	22	2.3	22	79	0	66	21	41	11	25	1.87
1054974--1055025	20	2.7	20	78	3	61	19	19	21	40	1.92
1054974--1055034	20	3.1	19	72	6	50	19	18	21	40	1.91
1056984--1057029	4	11.5	4	80	0	56	26	2	4	67	1.21
1057173--1057270	21	4.7	21	83	0	115	24	35	18	21	1.95
1057179--1057270	42	2.2	42	88	0	130	25	35	18	20	1.95
1058642--1058775	64	2.1	64	94	0	232	31	1	17	50	1.55
1058981--1059038	20	2.9	20	84	0	80	18	18	18	43	1.89
1063579--1063624	23	2.0	22	83	4	56	43	2	0	54	1.12
1064047--1064365	36	8.7	36	77	12	226	47	3	5	43	1.42
1064045--1064354	38	8.2	36	77	11	218	47	3	4	43	1.41
1064087--1064354	74	3.6	75	77	11	221	48	3	4	43	1.42
1064106--1064279	39	4.5	39	83	7	173	50	4	4	40	1.44
1064225--1064443	75	2.9	78	80	14	228	44	3	6	45	1.45
1064264--1064444	36	4.9	36	77	14	158	42	3	7	46	1.47
1064449--1064508	24	2.4	24	81	10	59	21	3	1	73	1.07
1064454--1064508	27	2.0	28	85	3	76	21	3	0	74	0.97
1066012--1066042	7	4.6	7	92	8	55	25	0	0	74	0.82
1066012--1066041	13	2.3	13	100	0	60	26	0	0	73	0.84
1067666--1067732	24	2.9	23	88	4	98	31	23	23	20	1.98
1067730--1067786	30	1.9	30	85	0	78	35	28	12	24	1.91
1071955--1072002	23	2.0	23	88	4	69	33	27	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1072000--1072060	30	2.0	30	87	0	86	32	27	18	21	1.96
1072769--1072805	19	1.9	19	100	0	74	24	21	21	32	1.98
1075656--1075744	44	2.0	44	82	4	108	40	10	19	30	1.84
1075861--1075968	23	4.7	23	75	7	96	18	21	24	36	1.95
1076169--1076211	6	7.2	6	89	0	50	39	0	23	37	1.55
1079853--1079968	39	3.0	39	87	0	142	31	24	25	18	1.97
1081403--1081448	18	2.7	18	81	15	53	65	2	4	28	1.23
1081862--1081932	30	2.3	31	90	4	117	38	16	7	38	1.76
1082249--1082343	42	2.3	42	94	0	163	15	18	17	47	1.83
1082547--1082685	28	5.5	26	74	14	73	45	0	2	51	1.18

Tables:   1   2   3   4   5   6   7