genome.fa.s8983.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008983.1 Hibiscus syriacus cultivar Beakdansim tig00112347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1350231

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421484--421563	2	40.0	2	97	0	151	50	1	0	48	1.08
435747--435821	18	4.0	18	84	6	96	17	20	33	29	1.95
435747--435818	39	1.9	36	88	8	108	15	19	34	30	1.93
440919--440992	18	3.9	18	85	5	94	17	20	33	28	1.95
443340--443413	18	3.9	18	85	5	94	17	20	33	28	1.95
445750--445794	22	2.1	22	88	12	67	22	17	26	33	1.96
446675--446708	12	2.6	13	86	13	52	55	0	0	44	0.99
447760--447820	30	2.0	31	93	3	106	29	11	18	40	1.85
448125--448154	7	4.3	7	91	0	51	56	43	0	0	0.99
455448--455485	20	1.9	20	94	0	67	34	18	21	26	1.96
456205--456273	2	34.5	2	100	0	138	50	0	0	49	1.00
456649--456701	23	2.2	24	90	6	81	22	22	24	30	1.99
461958--462013	23	2.5	22	77	8	69	26	16	19	37	1.92
462434--462471	19	2.0	20	89	5	60	15	0	15	68	1.22
466328--466662	131	2.6	131	84	5	435	32	11	16	39	1.84
467667--467708	2	22.0	2	90	9	70	52	0	0	47	1.00
467335--468044	357	2.0	357	98	0	1359	40	14	8	37	1.76
470113--470140	9	3.1	9	100	0	56	46	0	10	42	1.38
470560--470656	49	2.0	49	91	2	160	27	13	16	42	1.86
470814--470899	10	8.0	10	73	14	57	43	0	8	48	1.32
470836--470899	14	4.3	14	79	14	74	43	0	10	45	1.39
470829--470915	32	2.7	32	77	10	104	43	0	11	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470868--470913	20	2.2	22	92	7	78	45	0	10	43	1.39
470878--470911	9	3.6	9	85	14	50	50	0	11	38	1.39
471146--471198	11	4.4	11	84	15	61	45	5	7	41	1.56
471146--471266	24	4.9	24	70	16	86	44	4	9	42	1.55
471858--471884	14	1.9	14	100	0	54	44	33	0	22	1.53
473753--473801	24	2.0	24	88	0	71	46	4	2	46	1.33
474062--474122	14	4.1	14	82	15	77	45	11	0	42	1.40
474043--474082	20	2.0	20	95	0	71	40	12	0	47	1.41
474043--474143	11	9.3	11	70	21	70	45	11	0	42	1.41
474043--474122	32	2.4	34	91	4	128	43	12	0	43	1.42
476386--476425	12	3.6	12	83	12	50	45	5	0	50	1.23
476412--476799	22	17.6	22	86	3	530	42	0	9	47	1.36
476823--476881	31	1.9	31	92	0	100	44	8	5	42	1.57
483511--483571	21	3.2	21	69	26	71	47	14	4	32	1.66
483493--483572	36	2.2	36	91	2	126	45	17	5	32	1.70
488996--489217	75	3.0	75	94	0	381	39	18	27	14	1.90
490585--490630	18	2.6	17	83	10	56	4	10	8	76	1.15
496188--496222	4	8.8	4	100	0	70	51	22	0	25	1.48
498885--498935	18	2.9	17	83	13	59	45	19	0	35	1.51
498888--498931	18	2.4	18	84	0	61	50	18	0	31	1.47
499130--499247	37	3.2	37	95	0	209	31	16	25	27	1.96
500691--500818	69	1.9	67	83	6	168	45	7	10	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511454--511488	2	17.5	2	100	0	70	51	0	0	48	1.00
513893--513949	8	7.0	8	77	16	55	0	63	0	36	0.95
513950--513977	2	14.0	2	100	0	56	50	0	0	50	1.00
514475--514514	21	1.9	21	94	0	71	12	20	35	32	1.90
527934--527961	8	3.5	8	100	0	56	42	0	0	57	0.99
529947--530717	257	3.0	257	97	0	1443	36	11	24	27	1.90
532353--532491	24	5.9	24	84	2	165	26	20	25	27	1.99
532353--532491	47	2.9	48	84	2	147	26	20	25	27	1.99
532356--532491	71	1.9	71	83	5	177	26	20	25	27	1.99
537003--537589	290	2.0	290	95	0	1048	39	12	21	26	1.88
539260--539290	14	2.3	14	94	5	55	22	3	29	45	1.68
539438--539505	23	2.9	24	84	4	102	23	25	23	27	2.00
539443--539521	23	3.5	21	83	8	61	21	22	26	29	1.99
541043--541151	49	2.2	49	83	0	137	25	25	20	28	1.99
543670--543701	11	2.9	11	95	0	55	34	0	9	56	1.32
545030--545077	19	2.5	20	82	3	62	29	12	6	52	1.63
548353--548455	31	3.3	30	73	10	84	26	31	26	16	1.97
557774--557819	12	3.8	12	83	8	58	17	21	19	41	1.90
558025--558074	11	4.5	11	79	0	55	52	14	14	20	1.75
558025--558074	22	2.3	22	89	0	73	52	14	14	20	1.75
558080--558142	23	2.7	23	80	7	65	39	15	19	25	1.91
558103--558153	24	2.2	23	89	3	75	45	17	13	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558109--558182	23	3.2	23	82	1	76	47	20	12	20	1.81
558377--558460	32	2.7	32	90	1	125	40	4	23	30	1.75
558701--558738	20	1.9	20	94	0	67	39	15	7	36	1.77
559033--559065	14	2.4	14	94	0	57	36	18	6	39	1.75
559243--559267	10	2.5	10	100	0	50	60	20	8	12	1.57
560353--560384	14	2.3	14	100	0	64	50	28	15	6	1.68
562590--562675	3	27.7	3	85	4	100	60	0	0	39	0.97
562904--565261	113	21.0	112	93	4	3722	31	18	14	35	1.91
562904--565261	224	10.5	225	93	3	3764	31	18	14	35	1.91
562904--565261	337	7.0	337	92	3	3837	31	18	14	35	1.91
565889--566011	63	2.0	63	98	0	237	37	12	21	28	1.90
566153--566740	83	7.1	83	97	1	1054	37	22	12	27	1.90
566630--566856	115	2.0	116	98	0	438	35	21	11	31	1.89
566745--566986	83	2.9	83	95	2	450	37	22	12	27	1.90
566547--566938	198	2.0	198	97	1	750	36	21	11	29	1.90
566464--566986	281	1.9	281	98	0	1012	37	21	12	28	1.90
569020--569073	11	5.0	11	91	6	76	0	18	0	81	0.69
569020--569089	15	4.8	14	78	15	70	0	15	2	81	0.81
569030--569075	19	2.5	19	93	6	78	0	17	0	82	0.67
572563--572616	14	3.8	14	85	2	63	53	7	14	24	1.66
576208--576287	3	25.7	3	82	5	79	58	0	0	41	0.98
584079--584183	12	8.8	12	76	0	111	51	15	18	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584079--584183	24	4.4	24	85	0	147	51	15	18	15	1.77
584080--584183	48	2.2	48	89	0	163	51	15	17	15	1.76
585737--585780	18	2.4	18	100	0	88	18	22	43	15	1.88
589603--589642	20	2.0	21	85	5	55	55	5	7	32	1.50
594244--594667	225	1.9	225	90	1	679	25	12	20	41	1.88
600011--600142	20	6.5	20	83	4	113	44	16	19	18	1.87
600011--600142	41	3.2	41	84	1	149	44	16	19	18	1.87
600011--600142	61	2.2	61	83	2	158	44	16	19	18	1.87
600492--600560	21	3.4	20	82	9	86	20	20	18	40	1.92
600492--600665	20	8.6	21	77	12	143	20	17	21	40	1.91
600650--600767	20	5.8	21	73	5	71	27	15	27	29	1.96
604764--604841	19	3.8	20	76	15	70	16	26	33	23	1.96
604764--604843	20	3.9	20	73	13	56	16	27	32	23	1.96
612140--612180	18	2.3	18	87	8	57	51	7	0	41	1.30
613438--613462	2	12.5	2	100	0	50	0	0	48	52	1.00
614568--614615	21	2.3	21	100	0	96	22	20	43	12	1.86
618093--618157	2	32.5	2	100	0	130	49	0	0	50	1.00
622814--622937	66	2.0	62	85	9	171	19	20	16	44	1.87
623117--623173	20	2.8	20	97	0	105	38	24	22	14	1.91
624170--624216	18	2.4	19	79	13	51	44	2	0	53	1.12
624468--624508	21	1.9	22	85	5	57	46	2	4	46	1.37
627523--627629	45	2.4	45	82	7	128	33	19	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630378--630489	23	5.0	23	83	7	131	23	21	25	30	1.99
630379--630489	46	2.5	46	88	2	163	23	21	25	29	1.99
635616--635658	18	2.4	18	100	0	86	53	4	18	23	1.63
635953--636160	65	3.2	62	79	12	206	26	17	24	31	1.97
638552--638651	3	33.3	3	85	0	110	25	36	5	34	1.78
638565--638651	24	3.6	24	93	0	156	24	35	5	34	1.79
646700--646745	20	2.3	20	92	0	74	17	69	6	6	1.32
648317--648347	2	15.5	2	100	0	62	51	0	0	48	1.00
651500--651568	23	3.1	22	84	12	72	37	2	0	59	1.12
651555--651655	29	3.3	29	77	13	89	40	4	0	54	1.22

Tables:   1   2   3   4   5   6   7