genome.fa.s9014.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009014.1 Hibiscus syriacus cultivar Beakdansim tig00112402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3470424

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1552 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842249--1842303	18	3.1	18	86	0	74	21	16	30	30	1.95
1851190--1851224	2	17.5	2	87	0	52	57	0	0	42	0.99
1851190--1851222	14	2.4	14	100	0	66	57	0	0	42	0.98
1851383--1851434	13	4.0	13	92	0	68	30	11	23	34	1.90
1851382--1851441	26	2.4	26	83	5	79	30	13	23	33	1.93
1851389--1851441	13	4.1	13	95	0	79	32	13	22	32	1.92
1863071--1863140	32	2.2	31	82	7	86	32	12	22	31	1.92
1863084--1863148	32	2.0	32	87	0	94	35	12	20	32	1.89
1883753--1883833	24	3.4	24	82	0	81	29	23	23	23	1.99
1883753--1883845	48	2.0	47	82	2	114	27	24	25	21	1.99
1887285--1887358	22	3.3	22	81	3	85	21	13	28	36	1.91
1888773--1888864	43	2.1	43	87	0	139	43	8	21	26	1.81
1890508--1890584	30	2.5	30	87	2	82	33	14	14	37	1.86
1896659--1896769	56	2.0	56	94	0	195	26	12	9	52	1.68
1898418--1898464	23	2.0	23	83	4	58	19	40	27	12	1.88
1899187--1899231	13	3.5	13	87	6	74	22	46	17	13	1.83
1905114--1905152	20	2.0	20	89	0	60	33	10	23	33	1.88
1906284--1906348	23	2.8	23	88	0	85	20	29	7	43	1.79
1920902--1920935	3	11.3	3	93	0	59	0	29	0	70	0.87
1922163--1922233	18	3.9	18	94	0	124	18	21	33	26	1.96
1928785--1928817	15	2.2	15	94	0	57	57	15	18	9	1.63
1928792--1928832	15	2.7	15	88	3	55	65	7	19	7	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932664--1932774	51	2.2	51	82	12	140	54	6	36	2	1.40
1934722--1934844	2	62.5	2	88	3	187	45	0	0	53	1.06
1934904--1935164	85	3.1	85	93	1	416	32	16	21	30	1.95
1941385--1941427	2	21.5	2	100	0	86	51	0	0	48	1.00
1941589--1941627	13	3.2	13	92	7	64	30	12	23	33	1.92
1961158--1961196	19	2.1	19	86	13	55	58	5	5	30	1.41
1962506--1962574	29	2.4	28	90	4	102	43	18	5	31	1.74
1962575--1962620	7	6.6	7	84	0	65	26	17	30	26	1.97
1962576--1962616	21	2.0	21	100	0	82	29	14	29	26	1.95
1962621--1962656	13	2.8	13	91	4	56	11	22	47	19	1.80
1962634--1962682	22	2.2	22	85	7	64	12	20	48	18	1.79
1962618--1962679	17	3.6	17	71	2	52	12	20	46	19	1.83
1975877--1975914	9	4.1	9	90	6	58	10	26	31	31	1.90
1975930--1975973	12	3.8	12	82	17	65	20	45	22	11	1.83
1975923--1975974	23	2.3	22	90	3	86	19	50	21	9	1.76
1979891--1979980	23	3.8	24	82	7	105	30	22	22	25	1.99
1979890--1979992	23	4.4	23	79	6	73	29	24	22	24	1.99
1981612--1981659	21	2.2	22	85	10	64	62	10	6	20	1.49
1985106--1985160	22	2.5	22	97	2	103	38	0	18	43	1.50
1987507--1987552	21	2.2	20	85	11	58	43	21	0	34	1.53
1988619--1988708	29	3.0	28	73	10	72	35	15	5	43	1.70
1989974--1990088	51	2.3	51	85	0	149	51	12	3	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1990074--1990123	22	2.4	22	83	6	59	54	10	4	32	1.52
1992635--1992857	108	2.1	108	80	6	247	21	15	16	46	1.83
2005819--2005903	42	2.0	42	100	0	170	29	25	16	28	1.97
2009724--2009895	91	1.9	91	81	4	213	26	21	13	38	1.90
2011533--2011976	220	2.0	221	90	1	701	40	15	14	30	1.87
2014224--2014296	19	3.8	19	100	0	146	50	0	5	43	1.25
2014236--2014296	13	4.8	13	74	11	54	52	0	4	42	1.23
2014230--2014296	6	10.7	6	76	9	53	52	0	4	43	1.21
2016504--2016573	34	2.1	34	86	5	99	21	30	15	32	1.94
2016856--2016918	21	3.0	21	92	0	108	26	26	20	25	1.99
2017034--2017089	15	3.5	15	76	21	60	19	25	35	19	1.95
2017032--2017116	33	2.5	34	92	5	145	17	27	35	20	1.95
2017082--2017138	20	2.8	20	86	7	80	15	29	33	21	1.94
2017049--2017139	20	4.9	20	73	20	74	16	28	32	21	1.95
2019095--2019132	3	13.0	3	86	5	51	0	28	2	68	1.03
2028627--2028671	23	2.0	23	100	0	90	42	22	8	26	1.83
2031261--2031502	107	2.2	107	79	4	263	50	17	15	16	1.79
2032636--2033188	135	4.1	135	81	4	623	29	19	15	34	1.93
2034151--2034194	16	2.8	16	86	10	63	2	13	2	81	0.88
2034152--2034187	16	2.2	17	95	5	65	2	11	0	86	0.68
2043941--2044245	45	6.8	45	84	1	333	28	20	10	40	1.86
2043898--2044286	90	4.3	89	77	2	323	29	20	10	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2044028--2044286	135	1.9	135	81	0	311	29	21	10	38	1.87
2044697--2044752	22	2.7	20	76	10	67	26	26	12	33	1.92
2044697--2044916	96	2.3	96	85	4	286	27	24	15	33	1.95
2044756--2044937	96	1.9	96	84	5	235	28	24	16	30	1.96
2050871--2051185	45	7.0	45	87	1	407	28	20	11	39	1.87
2051666--2051826	76	2.1	76	86	3	227	27	22	17	31	1.97
2056158--2056196	18	2.2	18	90	4	62	10	0	33	56	1.33
2056187--2056241	22	2.5	22	88	5	76	9	7	43	40	1.64
2056438--2056942	135	3.7	135	85	1	636	29	19	15	35	1.93
2056444--2056940	269	1.8	270	83	3	660	28	19	15	36	1.93
2057962--2058096	5	25.6	5	75	18	57	7	14	1	76	1.07
2057967--2058096	6	21.3	6	74	17	65	6	15	1	76	1.07
2057967--2058096	12	11.7	11	71	18	76	6	15	1	76	1.07
2058001--2058053	25	2.2	24	83	10	63	11	11	1	75	1.13
2058057--2058099	17	2.7	16	82	10	61	0	23	0	76	0.78
2076713--2076869	65	2.4	65	83	5	185	27	19	23	29	1.98
2076713--2076919	65	3.2	63	76	10	179	26	18	24	30	1.98
2079002--2079040	13	3.1	13	88	3	53	48	2	7	41	1.45
2087750--2087906	65	2.4	65	85	5	194	27	19	22	29	1.98
2087750--2087947	65	3.1	64	79	5	193	26	18	23	31	1.97
2090023--2090061	13	3.1	13	88	3	53	48	2	7	41	1.45
2096264--2096466	66	3.1	62	78	11	203	27	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2096240--2096424	66	2.8	65	80	9	200	28	18	22	30	1.97
2110431--2110484	19	2.8	19	82	0	81	33	18	27	20	1.96
2113098--2113135	17	2.2	17	90	0	58	39	13	10	36	1.79
2113301--2113363	31	2.0	31	84	0	81	23	15	22	38	1.93
2113315--2113383	30	2.3	31	79	2	77	24	17	24	33	1.96
2117262--2117319	28	2.1	28	100	0	116	43	10	17	29	1.82
2118388--2118431	17	2.6	17	88	0	61	36	11	11	40	1.77
2118596--2118658	31	2.0	31	84	0	81	23	17	23	34	1.96
2118617--2118716	30	3.3	30	81	1	101	24	17	24	35	1.95
2128653--2128697	23	2.0	23	100	0	90	42	22	8	26	1.83
2133913--2133957	19	2.4	19	84	0	54	22	6	20	51	1.70
2134410--2134471	23	2.7	23	100	0	124	17	20	29	32	1.96
2136680--2136720	13	3.2	13	82	0	55	24	2	17	56	1.53
2136831--2136865	18	1.9	18	88	11	54	22	0	8	68	1.16
2137384--2137449	32	2.1	32	88	5	98	30	12	16	40	1.85
2144334--2144401	2	35.0	2	85	5	95	47	1	1	50	1.19
2147456--2147616	85	1.9	84	88	5	243	31	16	21	31	1.95
2147596--2147626	13	2.4	13	100	0	62	32	9	19	38	1.84
2152113--2152161	23	2.1	23	88	7	73	55	0	0	44	0.99
2152844--2152868	10	2.5	10	100	0	50	52	8	0	40	1.31
2153965--2154015	19	2.7	19	93	0	93	33	15	5	45	1.71
2157203--2157248	21	2.1	22	84	8	58	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2157447--2157493	25	1.9	24	91	4	76	53	0	0	46	1.00
2173456--2173507	26	2.0	26	96	0	95	23	17	19	40	1.91
2177118--2177164	2	23.5	2	100	0	94	51	0	0	48	1.00
2181444--2181485	18	2.3	18	84	8	50	35	2	7	54	1.41
2184033--2184069	2	18.5	2	100	0	74	51	0	0	48	1.00
2198934--2198985	19	2.7	18	80	11	50	51	13	1	32	1.52
2198963--2199017	25	2.1	27	86	6	78	50	20	3	25	1.64
2198959--2199023	25	2.7	23	81	13	76	49	21	4	24	1.68
2199451--2199494	18	2.4	18	88	0	61	13	6	38	40	1.71
2202250--2202936	202	3.3	215	91	4	1109	51	8	12	27	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13