genome.fa.s9075.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009075.1 Hibiscus syriacus cultivar Beakdansim tig00112508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1223780

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 743 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311341--311481	2	76.0	2	67	24	69	41	2	4	50	1.39
311377--311481	13	8.3	13	70	15	60	41	1	6	49	1.40
311343--311482	35	3.6	37	75	17	126	42	2	5	50	1.39
315893--315945	16	3.3	16	83	0	70	22	15	15	47	1.82
316074--316118	13	3.4	13	80	17	56	44	8	0	46	1.34
316373--316491	45	2.6	46	80	9	147	43	2	26	27	1.67
316469--316540	27	2.6	28	77	14	78	43	0	30	26	1.55
316496--316535	19	2.0	20	85	4	55	45	0	27	27	1.54
316880--317002	2	61.0	2	76	13	119	44	5	1	47	1.36
317085--317126	18	2.2	20	91	8	70	50	26	2	21	1.61
317153--317230	12	6.8	12	70	24	60	42	8	1	47	1.43
317191--317233	23	1.9	22	90	4	68	46	11	0	41	1.40
317457--317692	20	12.1	19	71	16	112	38	3	4	53	1.38
317496--317695	22	8.9	22	73	18	139	40	3	3	52	1.35
317514--317621	16	6.8	16	70	15	71	38	4	2	53	1.36
317532--317695	2	87.0	2	72	20	122	42	2	4	50	1.35
317572--317668	37	2.6	37	81	4	115	41	2	7	49	1.42
324225--324259	17	2.0	18	88	5	54	28	8	0	62	1.24
330260--330302	22	2.0	22	85	0	59	32	0	0	67	0.91
330255--330302	19	2.5	20	78	21	57	33	0	0	66	0.92
332337--332380	19	2.3	19	88	0	61	47	6	2	43	1.42
332925--333073	43	3.5	43	82	3	192	36	19	20	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333016--333125	57	1.9	56	90	1	175	31	18	24	25	1.97
332984--333166	100	1.8	99	85	3	260	32	18	22	26	1.97
333073--333281	43	4.9	43	81	2	226	32	17	22	26	1.97
336587--336793	81	2.5	83	79	2	202	30	23	18	27	1.97
337209--337251	20	2.2	20	95	0	77	39	18	9	32	1.83
337217--337257	20	2.0	20	95	0	73	41	14	7	36	1.74
350880--351200	43	7.4	43	70	11	172	49	6	18	26	1.71
350891--351042	44	3.5	44	80	5	141	49	4	20	25	1.68
350906--351139	86	2.7	87	76	5	240	47	6	20	25	1.73
350906--351139	88	2.7	88	76	5	244	47	6	20	25	1.73
355443--355983	55	9.9	55	89	2	703	35	17	17	29	1.93
355453--355983	218	2.4	218	86	2	681	34	17	18	29	1.94
356292--356346	22	2.5	22	96	0	101	27	16	14	41	1.87
361772--361810	3	13.0	3	94	0	69	66	2	0	30	1.05
362461--362635	55	3.2	55	87	0	206	38	16	16	29	1.90
365289--365330	3	14.0	3	94	0	75	66	2	0	30	1.04
365983--366157	55	3.2	55	85	1	217	37	14	16	30	1.89
369469--369988	55	9.5	55	84	1	389	35	15	16	31	1.91
369447--369953	110	4.6	110	85	2	601	35	15	15	33	1.89
369491--369963	165	2.9	165	85	2	630	35	15	16	32	1.90
372445--372494	17	2.9	17	81	0	55	30	14	12	44	1.81
380347--380393	20	2.4	19	86	10	60	65	0	10	23	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383342--383567	76	3.1	73	79	9	244	55	11	1	31	1.44
384746--384780	18	1.9	18	94	0	61	25	22	20	31	1.98
399541--399616	40	1.9	40	88	0	116	15	11	18	53	1.71
410983--411019	2	18.5	2	94	0	65	45	2	51	0	1.15
412201--412253	26	2.0	26	85	7	70	41	7	3	47	1.50
416815--416839	11	2.3	11	100	0	50	40	8	36	16	1.77
421117--421168	20	2.6	19	82	14	61	23	25	19	32	1.97
428162--428565	43	9.5	41	76	10	264	25	17	7	49	1.72
428385--428565	85	2.1	85	84	11	230	25	14	9	50	1.72
433425--433472	23	2.1	23	88	0	69	35	12	18	33	1.89
433849--433902	23	2.5	20	75	18	54	42	18	1	37	1.61
433864--433926	23	2.7	23	90	0	90	38	19	6	36	1.77
433584--434880	431	3.0	431	98	1	2545	38	13	8	39	1.74
434280--434331	21	2.5	20	84	9	68	42	19	1	36	1.62
434285--434355	23	3.2	22	84	8	81	39	19	5	35	1.76
434704--434757	23	2.5	20	75	18	54	42	18	1	37	1.61
434719--434781	23	2.7	23	90	0	90	38	19	6	36	1.77
437327--437987	183	3.6	184	98	0	1272	34	15	15	34	1.89
439354--439404	3	17.0	3	83	0	66	25	33	3	37	1.74
439354--439416	12	5.2	12	90	0	81	23	33	6	36	1.80
439358--439419	18	3.4	18	88	0	88	20	33	6	38	1.79
439358--439419	6	10.3	6	83	0	61	20	33	6	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440869--442045	194	6.1	197	92	5	1872	32	15	15	36	1.88
442128--442187	19	3.2	19	95	0	102	56	10	3	30	1.48
442820--442859	21	2.0	20	85	14	55	42	17	7	32	1.77
443948--444010	33	1.9	33	86	0	90	23	46	1	28	1.62
446172--446218	20	2.4	19	78	7	58	19	17	8	55	1.67
446330--446379	20	2.5	20	81	12	75	22	16	10	52	1.73
448161--448197	2	18.5	2	94	0	65	48	0	2	48	1.15
452232--452268	19	2.0	18	89	5	56	67	0	2	29	1.04
452914--453103	76	2.6	75	86	9	257	56	12	0	30	1.41
452996--453043	25	2.0	24	83	4	60	60	14	0	25	1.34
453023--453084	32	2.0	31	84	9	81	62	9	0	27	1.26
452914--453139	76	3.1	72	78	9	215	56	11	1	31	1.43
457812--457844	4	8.2	4	93	0	57	72	3	0	24	0.98
458298--458327	12	2.5	12	88	0	51	66	3	23	6	1.30
458424--458611	75	2.6	70	85	7	227	57	12	0	29	1.35
458450--458650	75	2.8	74	82	8	245	56	10	0	31	1.38
463387--463480	42	2.3	41	83	5	118	25	19	21	34	1.96
463145--463667	235	2.2	235	86	1	715	32	14	18	34	1.91
463765--463857	37	2.5	37	91	0	150	35	16	24	23	1.95
465782--465822	22	2.0	21	90	9	66	41	0	12	46	1.41
465826--465974	77	1.9	77	85	5	203	46	4	8	40	1.54
465826--465963	38	3.5	39	84	4	181	47	5	7	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465943--466013	26	2.9	24	75	8	79	46	5	9	38	1.61
465844--465989	38	3.8	38	80	11	104	47	5	8	38	1.56
466004--466057	21	2.6	21	69	0	54	44	1	7	46	1.42
466097--466149	6	8.3	6	76	12	52	16	5	0	77	0.96
466098--466149	15	3.2	15	79	20	52	17	5	0	76	0.97
467287--467321	10	3.5	10	92	7	54	25	0	0	74	0.82
467281--467334	25	2.1	26	89	3	83	24	3	0	72	1.01
467272--467317	15	3.1	15	79	17	51	30	2	0	67	1.03
467272--467309	15	2.6	14	88	8	58	28	2	0	68	1.03
467281--467325	15	3.0	15	81	9	56	24	0	0	75	0.80
477123--477174	25	2.1	25	81	0	59	50	0	0	50	1.00
478505--478579	35	2.2	35	81	9	93	42	4	0	53	1.19
478573--478834	137	1.9	137	84	7	350	38	8	8	45	1.64
478607--478856	137	1.8	138	86	4	362	38	8	8	46	1.63
479040--479092	23	2.4	23	90	6	83	43	7	13	35	1.72
479048--479092	23	2.0	23	100	0	90	40	8	13	37	1.76
480918--480958	7	6.0	7	86	13	50	14	17	9	58	1.62
481013--481059	20	2.3	20	85	0	67	23	10	8	57	1.60
487788--487844	22	2.6	22	94	0	96	35	15	12	36	1.85
488511--488680	45	3.8	45	86	6	229	27	20	18	33	1.96
488511--488680	89	1.9	90	85	6	238	27	20	18	33	1.96
488699--488972	45	6.1	45	91	1	417	24	21	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488892--488959	20	3.2	20	66	22	57	23	23	20	32	1.98
489122--489183	3	20.7	3	90	6	99	37	0	0	62	0.95
490214--490254	2	20.5	2	100	0	82	48	0	0	51	1.00
490369--490476	29	3.7	30	72	17	95	32	9	3	54	1.50
497160--497208	23	2.1	23	85	7	64	57	14	2	26	1.48
499231--499278	24	2.1	23	84	7	62	25	18	37	18	1.94
509092--509147	26	2.2	26	100	0	112	41	12	3	42	1.60
514597--514631	4	8.8	4	87	12	54	77	0	2	20	0.90
516893--517202	169	1.8	166	84	6	419	27	17	19	35	1.94
516890--517193	84	3.6	82	80	5	317	27	17	19	35	1.94

Tables:   1   2   3   4   5   6   7