genome.fa.s9075.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009075.1 Hibiscus syriacus cultivar Beakdansim tig00112508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1223780

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 743 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518719--518910	99	1.9	99	88	0	285	31	16	17	34	1.92
519405--519435	11	2.7	11	95	5	53	74	0	9	16	1.07
525060--525323	84	3.2	83	77	8	250	27	17	17	37	1.93
526945--527136	99	1.9	99	86	2	269	30	17	16	35	1.92
530412--530452	20	2.0	20	90	9	66	75	0	2	21	0.92
531191--531229	20	2.0	20	84	0	51	7	20	0	71	1.10
534209--534300	42	2.2	42	94	0	157	46	16	13	23	1.82
535662--535689	3	9.3	3	100	0	56	0	0	32	67	0.91
535925--536101	71	2.5	73	80	8	213	29	12	14	43	1.82
536188--536484	77	3.8	77	80	5	289	37	15	8	38	1.77
540713--540764	21	2.4	21	96	3	95	46	21	17	15	1.84
548974--549025	27	2.0	27	88	3	79	61	0	0	38	0.96
549486--549510	13	1.9	13	100	0	50	76	0	0	24	0.80
549812--549850	20	2.0	20	100	0	78	35	12	15	35	1.86
554228--554302	34	2.3	33	77	8	84	56	1	2	40	1.22
555608--555721	59	1.9	59	84	10	151	45	7	4	42	1.53
556643--556918	137	2.0	139	97	2	522	36	15	17	30	1.91
559657--559696	21	1.9	21	85	10	55	22	37	0	40	1.54
561651--561731	21	3.7	23	76	15	73	25	22	28	23	1.99
561565--562076	262	2.0	263	96	1	940	33	16	22	27	1.95
568424--568535	59	1.9	59	94	0	197	33	17	23	25	1.96
568570--568682	41	2.7	39	73	8	100	32	23	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568734--569012	108	2.5	110	81	9	318	41	17	9	31	1.82
571209--571238	2	15.0	2	100	0	60	50	0	0	50	1.00
575922--576072	31	5.0	31	93	4	247	19	19	21	39	1.93
580275--580397	31	4.0	31	95	2	212	19	19	22	38	1.94
591905--591995	45	2.0	46	85	6	123	37	12	19	30	1.88
597949--598056	46	2.3	48	76	4	114	41	10	20	27	1.84
599643--599683	22	1.9	21	85	5	55	19	2	9	68	1.29
600846--600981	60	2.3	59	80	11	143	38	5	22	33	1.76
601541--601585	22	2.0	23	91	4	74	22	0	24	53	1.46
613450--613504	24	2.3	24	81	9	60	18	7	3	70	1.25
615375--615403	3	9.7	3	100	0	58	31	0	0	68	0.89
617424--618246	106	7.8	106	95	0	1391	33	24	17	23	1.96
617424--618246	319	2.6	318	94	0	1427	33	24	17	23	1.96
618639--618743	36	2.9	36	94	0	183	23	20	14	41	1.88
618662--618726	21	3.4	21	64	24	61	23	20	13	43	1.87
620332--620386	24	2.3	24	81	9	60	18	7	3	70	1.25
625209--625529	158	2.0	160	96	1	592	19	13	19	47	1.81
629500--631496	106	18.9	106	97	0	3700	40	14	9	36	1.78
629500--631496	211	9.4	212	96	0	3709	40	14	9	36	1.78
629500--631496	317	6.3	318	96	0	3700	40	14	9	36	1.78
649380--649414	18	1.9	18	94	0	61	22	17	20	40	1.92
655182--655337	77	2.0	77	96	2	287	52	20	12	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659212--661949	911	3.0	910	97	1	5109	29	11	12	45	1.78
661974--662218	131	1.9	131	85	3	341	35	10	13	40	1.79
663239--663423	41	4.5	41	77	8	144	30	16	17	35	1.92
663274--663453	41	4.4	41	84	4	211	28	17	17	36	1.92
665593--665756	80	2.1	79	89	3	249	31	12	17	39	1.86
665610--665778	80	2.1	78	82	7	205	31	12	15	39	1.85
668133--668456	85	3.8	87	76	7	297	24	20	21	33	1.97
668133--668480	43	8.1	42	76	8	238	24	20	21	33	1.97
671823--671873	20	2.8	18	80	14	59	50	1	1	45	1.24
671824--671866	17	2.6	17	85	3	52	48	2	2	46	1.27
672073--672229	29	5.2	29	75	7	125	43	10	8	37	1.70
671920--672127	112	1.9	106	84	8	278	41	11	12	35	1.77
672060--672230	93	1.8	93	92	0	288	43	12	8	36	1.72
672299--672370	29	2.4	29	83	2	99	48	12	8	30	1.70
671961--672395	233	1.9	235	89	2	680	42	10	10	36	1.74
672153--672654	138	3.6	138	87	1	713	40	11	10	36	1.77
672444--672507	29	2.2	29	94	0	110	43	12	9	34	1.75
672567--672643	29	2.7	29	85	4	84	41	16	9	32	1.80
673419--673467	22	2.2	22	78	7	55	61	10	12	16	1.57
677713--677873	5	32.2	5	100	0	322	19	19	0	60	1.37
677915--677967	21	2.4	24	81	15	69	18	5	13	62	1.50
680311--680378	21	3.2	20	70	15	57	36	19	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688895--688928	18	1.9	18	88	5	52	29	20	0	50	1.49
691828--691916	43	2.1	43	85	4	117	28	12	33	25	1.92
695308--695345	17	2.2	17	90	9	60	71	0	0	28	0.87
696067--696099	2	16.5	2	100	0	66	48	0	0	51	1.00
699891--699948	20	2.7	20	81	10	62	29	22	17	31	1.96
701302--701341	20	2.1	19	90	4	62	20	17	0	62	1.33
704831--704888	20	2.7	20	86	10	71	27	22	18	31	1.97
708825--709052	76	3.1	74	78	14	245	31	15	10	41	1.82
709058--709311	39	6.6	39	85	3	320	29	15	16	38	1.89
709058--709296	76	3.1	76	86	7	306	30	16	15	38	1.90
709057--709311	115	2.2	115	84	8	345	29	15	16	38	1.89
709787--710028	87	2.8	86	89	3	369	34	23	16	25	1.95
710672--710743	8	8.8	8	76	8	56	16	4	1	77	0.99
710672--710701	9	3.4	9	90	9	53	20	0	0	80	0.72
710674--710723	23	2.2	22	82	10	57	18	4	2	76	1.04
713444--713601	21	7.8	20	72	7	86	38	25	17	18	1.92
713568--713755	20	9.6	20	77	10	183	35	25	19	19	1.96
713589--713753	57	2.9	57	81	6	208	33	26	19	20	1.96
713897--713950	22	2.5	22	78	3	65	24	37	16	22	1.94
714129--714199	33	2.2	33	92	0	115	11	22	18	47	1.80
714278--714387	21	5.8	20	74	17	108	45	18	24	11	1.83
714271--714387	41	3.1	38	81	14	145	46	17	25	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714338--714394	14	3.7	14	75	20	60	43	22	24	8	1.81
714330--714410	33	2.5	33	95	0	144	46	22	22	8	1.78
714428--714516	14	5.7	14	73	21	79	8	24	23	42	1.83
714411--714524	33	3.5	33	95	2	212	9	23	21	45	1.81
716208--716669	93	5.1	93	96	3	859	22	12	19	45	1.84
716719--716843	19	7.2	19	71	18	94	45	28	17	8	1.78
716770--716843	33	2.3	33	93	6	125	45	29	17	6	1.74
716734--716843	51	2.2	49	79	11	114	45	28	18	8	1.77
716839--716957	19	6.8	19	75	18	123	10	20	22	47	1.80
716861--716917	14	3.7	14	77	20	60	10	21	22	45	1.82
716844--716936	33	2.8	33	95	0	168	10	20	21	47	1.80
717393--717451	19	3.0	20	70	7	57	25	37	18	18	1.94
718840--718876	14	2.6	14	91	0	65	32	0	21	45	1.52
718983--719080	19	5.4	19	84	13	143	45	17	22	14	1.84
718983--719098	53	2.2	53	98	1	225	43	18	24	13	1.86
719105--719362	33	7.5	33	73	18	215	13	23	17	45	1.84
719127--719420	19	16.7	19	79	17	350	13	23	17	46	1.83
719105--719420	52	6.0	52	98	1	614	13	23	17	45	1.83
719105--719420	105	3.0	105	99	0	625	13	23	17	45	1.83
719146--719462	33	9.2	33	73	16	270	13	22	17	46	1.83
721938--721984	24	2.0	24	87	8	69	38	21	14	25	1.92
722666--722895	20	11.5	20	85	3	230	20	18	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722862--722959	21	4.8	20	75	15	83	22	17	22	37	1.94
722862--722960	42	2.4	43	78	8	107	22	17	23	37	1.94
729620--729645	2	13.0	2	100	0	52	50	0	0	50	1.00
735347--735376	13	2.2	14	94	5	53	76	3	0	20	0.92
735347--735379	14	2.4	14	90	10	50	75	3	0	21	0.93
736604--736654	15	3.5	15	79	12	54	78	0	1	19	0.85
736606--736651	21	2.3	19	88	7	65	78	0	2	19	0.86
736604--736649	18	2.6	17	83	10	56	78	0	2	19	0.86
736657--736707	27	1.9	27	84	11	70	52	5	1	39	1.37
736669--736859	38	5.1	36	74	13	152	44	5	4	45	1.47

Tables:   1   2   3   4   5   6   7