Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009075.1 Hibiscus syriacus cultivar Beakdansim tig00112508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1223780

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 743 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1162559--1162607
2
25.0
2
86
12
66
46
2
2
48
1.25
1168697--1168759
30
2.1
30
97
2
119
34
6
42
15
1.73
1181530--1181672
65
2.2
65
88
5
209
31
20
13
33
1.92
1183257--1183293
19
2.0
18
94
5
65
45
0
43
10
1.39
1185569--1185648
2
41.0
2
86
9
112
47
0
2
50
1.14
1190611--1190726
24
4.8
24
85
6
137
41
16
16
25
1.89
1195342--1195393
24
2.2
24
82
0
59
50
17
11
21
1.77
1195362--1195480
24
5.0
24
88
6
161
40
19
17
22
1.91
1195398--1195498
48
2.1
48
87
3
141
41
19
15
22
1.90
1197957--1197991
18
1.9
18
100
0
70
14
22
45
17
1.84
1198184--1198212
9
3.2
9
100
0
58
10
0
51
37
1.36
1199451--1199613
64
2.5
65
81
4
195
31
17
25
25
1.97
1201106--1201159
23
2.3
23
87
0
81
18
25
25
29
1.98
1204698--1204752
24
2.4
23
85
14
71
30
18
23
27
1.97
1211454--1211486
16
2.1
16
100
0
66
36
6
45
12
1.66
1212109--1212147
2
20.0
2
94
5
71
51
0
0
48
1.00
1215252--1215333
9
8.6
10
78
11
52
79
1
10
8
1.00
1215243--1215340
10
10.2
10
77
12
55
78
1
10
10
1.01
1215289--1215346
17
3.5
16
74
25
50
81
0
8
10
0.89
1215253--1215302
18
2.7
19
82
17
61
78
2
12
8
1.05
1215289--1215346
19
3.2
18
76
9
55
81
0
8
10
0.89
1216630--1217197
133
4.3
132
72
9
381
32
17
18
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1220522--1220573
26
1.9
28
88
7
81
34
11
5
48
1.63

Tables:   1   2   3   4   5   6   7

The End!