genome.fa.s9086.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009086.1 Hibiscus syriacus cultivar Beakdansim tig00112530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1596699

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 761 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199505--199583	28	2.8	28	88	5	106	55	3	1	39	1.26
199529--199606	34	2.3	34	88	2	111	56	3	3	35	1.36
200305--200345	8	5.2	8	82	5	57	36	29	0	34	1.58
210583--210667	42	2.0	42	100	0	170	18	7	32	41	1.78
211300--211347	15	3.2	15	81	0	60	50	0	0	50	1.00
211300--211378	39	2.1	38	92	2	131	49	0	0	50	1.00
219478--219584	34	3.1	33	78	14	85	34	0	3	61	1.14
219511--219589	34	2.4	34	85	8	101	37	0	1	60	1.05
220061--220098	13	3.0	13	88	3	60	44	0	0	55	0.99
222994--223037	21	2.1	21	86	0	61	50	2	13	34	1.55
228989--229044	17	3.3	17	100	0	112	12	23	46	17	1.82
229042--229097	19	2.9	19	78	5	67	26	26	26	19	1.99
229046--229104	19	3.1	19	78	4	64	30	23	25	20	1.98
229048--229116	20	3.5	19	78	5	57	30	26	24	18	1.98
237283--237321	17	2.3	17	100	0	78	12	23	46	17	1.83
237249--237293	7	6.4	7	94	0	81	28	28	26	15	1.96
237319--237386	19	3.5	19	75	15	68	25	29	29	16	1.96
237323--237406	39	2.2	38	85	12	109	27	27	28	16	1.97
237323--237407	10	8.7	10	82	10	79	27	27	28	17	1.98
241467--241497	4	7.8	4	100	0	62	25	0	0	74	0.82
241860--241916	24	2.3	24	85	8	71	50	1	0	47	1.11
241897--241961	22	2.9	22	80	8	60	46	1	0	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241927--242030	55	1.9	53	84	11	140	49	0	0	49	1.14
242079--242147	19	3.6	18	71	21	52	47	2	1	47	1.25
242227--242324	27	3.3	31	72	23	77	48	2	0	48	1.12
242226--242296	29	2.3	29	83	9	88	49	2	0	47	1.16
242520--242578	14	4.1	14	76	4	64	37	13	6	42	1.71
244504--244584	34	2.3	35	80	12	96	45	2	1	50	1.22
244945--244993	25	2.0	25	91	0	80	32	14	12	40	1.83
245050--245115	32	2.1	32	91	5	107	28	22	24	24	1.99
245555--245587	2	16.5	2	100	0	66	51	0	0	48	1.00
248565--248625	7	8.9	7	89	1	88	31	11	55	1	1.45
253463--253512	18	2.8	18	93	0	91	26	44	12	18	1.84
256970--257017	3	15.7	3	79	12	53	62	0	0	37	0.95
256970--257017	14	3.4	14	82	8	53	62	0	0	37	0.95
259820--259845	7	3.7	7	100	0	52	26	0	0	73	0.84
265149--265210	20	2.9	21	80	7	72	19	25	33	20	1.96
271694--271751	30	2.0	30	86	3	82	34	13	6	44	1.71
272344--272373	15	2.0	15	93	0	51	23	0	0	76	0.78
273977--274031	29	1.9	28	82	10	67	56	18	0	25	1.42
275739--275879	75	1.9	76	90	3	230	21	19	9	48	1.77
281273--281461	76	2.5	77	88	1	281	24	31	23	20	1.98
287274--287313	21	1.9	21	89	0	62	25	40	25	10	1.86
289235--289285	9	6.2	8	76	19	52	13	0	27	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289237--289280	17	2.6	17	85	7	63	13	0	29	56	1.38
289869--290078	75	2.8	77	86	5	293	23	32	23	20	1.98
291529--291623	29	3.2	30	86	3	120	32	2	2	63	1.18
291582--291738	31	4.9	30	70	16	104	42	4	0	52	1.26
303077--303135	26	2.3	26	93	0	100	55	5	23	15	1.59
306773--306842	29	2.3	30	78	9	79	47	11	10	31	1.73
306788--306847	29	2.1	29	93	0	102	43	13	10	33	1.77
310037--310076	19	2.1	19	100	0	80	37	5	25	32	1.77
316383--316451	34	2.1	33	97	2	129	31	15	20	31	1.94
319516--319690	60	2.9	59	86	3	199	44	4	19	32	1.71
319559--319707	60	2.5	60	85	2	174	44	4	18	32	1.70
321464--321521	29	2.0	29	93	0	98	13	37	25	22	1.91
321564--321591	14	2.0	14	100	0	56	21	35	28	14	1.92
321613--321662	23	2.2	23	92	7	84	26	24	42	8	1.82
321666--321750	29	2.9	29	94	0	152	20	29	37	12	1.90
321779--321803	12	2.1	12	100	0	50	16	36	8	40	1.77
321821--321906	29	3.0	29	100	0	172	19	31	34	13	1.91
329447--329549	3	33.7	3	82	3	116	39	0	0	59	1.04
331672--331742	18	3.7	18	74	20	63	28	5	4	61	1.37
333719--333759	7	5.9	7	83	11	57	14	17	9	58	1.62
337929--338148	114	1.9	114	93	0	377	34	15	20	30	1.93
338914--339023	42	2.7	41	72	16	109	36	18	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340121--340286	54	3.1	54	90	0	251	38	15	22	23	1.92
340637--340691	22	2.5	22	93	0	101	34	10	14	40	1.81
341540--342327	76	10.4	76	95	0	1357	22	20	21	35	1.96
341540--342327	227	3.5	227	94	1	1382	22	20	21	35	1.96
341540--342327	303	2.6	303	96	0	1425	22	20	21	35	1.96
342461--342563	3	33.7	3	76	3	98	40	0	1	57	1.10
357223--357261	18	2.2	18	85	0	51	25	0	15	58	1.37
357664--357693	12	2.5	12	94	0	51	30	10	10	50	1.69
358040--358088	3	16.3	3	86	0	71	30	2	2	65	1.15
359676--359711	2	18.5	2	94	5	65	47	0	0	52	1.00
364465--364532	30	2.3	30	81	0	82	42	17	7	32	1.77
372609--372879	141	1.9	141	87	3	402	27	29	18	24	1.98
372762--373008	91	2.7	91	91	3	361	25	30	19	25	1.98
372794--373008	91	2.4	91	95	0	376	24	31	18	25	1.98
373213--373267	3	18.3	3	88	0	83	30	1	1	65	1.13
374854--374893	2	20.5	2	94	5	73	47	0	0	52	1.00
382176--382205	5	6.0	5	100	0	60	0	40	0	60	0.97
385470--385575	18	5.6	17	81	15	72	27	1	1	68	1.10
385492--385575	9	8.7	10	75	19	81	30	1	0	67	0.98
385488--385575	21	4.4	21	80	13	107	29	1	0	69	0.96
391163--391194	15	2.1	15	94	0	55	25	18	9	46	1.79
393984--394027	22	2.0	22	81	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402627--402745	35	3.3	37	88	8	174	44	19	4	31	1.70
407204--407315	34	3.2	35	82	12	131	45	15	2	36	1.60
414270--414362	46	2.0	46	97	0	177	41	20	15	22	1.89
415064--415088	3	8.3	3	100	0	50	32	0	0	68	0.90
416140--416189	21	2.4	21	96	0	91	26	16	28	30	1.96
416205--416250	19	2.4	19	96	0	83	19	19	19	41	1.91
416274--416330	21	2.7	21	97	0	105	24	14	29	31	1.94
416979--417021	6	7.2	6	100	0	86	0	16	48	34	1.46
419538--419563	3	8.7	3	100	0	52	65	0	34	0	0.93
419830--419884	2	27.5	2	100	0	110	0	49	0	50	1.00
421859--422234	120	3.1	120	99	0	743	28	20	13	38	1.89
422996--423049	27	2.0	27	82	7	65	42	1	1	53	1.22
423408--423472	24	2.7	25	73	7	71	55	3	0	41	1.15
423453--423490	11	3.5	11	88	0	58	65	0	0	34	0.93
424978--425005	14	2.0	14	100	0	56	21	0	0	78	0.75
425026--425106	9	9.0	9	86	0	81	55	0	0	44	0.99
425067--425106	3	13.3	3	94	0	71	65	0	0	35	0.93
425358--425452	36	2.6	36	89	0	145	20	20	8	51	1.72
425375--425433	18	3.3	17	70	25	50	18	16	10	54	1.70
425393--425953	113	5.1	112	93	1	877	28	19	16	35	1.93
425393--426107	206	3.3	221	90	5	1070	28	19	16	35	1.93
425853--426049	96	2.1	96	100	0	394	29	19	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436009--436041	12	2.8	12	100	0	66	9	33	0	57	1.30
439744--439781	14	2.9	13	81	11	51	57	0	0	42	0.98
441055--441092	19	2.1	18	95	5	67	21	0	2	76	0.91
441101--441176	12	7.2	11	80	15	65	57	0	0	42	0.98
441113--441181	3	23.0	3	90	0	111	62	0	0	37	0.96
443311--443376	30	2.2	30	88	0	96	56	12	10	21	1.65
443322--443411	30	3.0	29	80	4	81	64	10	6	18	1.46
444837--444897	3	20.0	3	86	9	88	63	0	1	34	1.04
445069--445451	134	2.9	134	86	1	527	25	18	31	24	1.98
445659--445885	91	2.5	90	84	8	282	44	14	12	27	1.82

Tables:   1   2   3   4   5   6   7