genome.fa.s9086.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009086.1 Hibiscus syriacus cultivar Beakdansim tig00112530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1596699

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 761 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1207410--1207449	15	2.7	15	92	0	62	37	27	30	5	1.78
1211309--1211432	51	2.4	51	82	2	142	21	29	33	14	1.93
1212380--1212404	12	2.1	12	100	0	50	52	8	0	40	1.31
1213183--1213221	19	2.2	18	86	9	53	30	0	7	61	1.24
1215153--1215197	13	3.3	13	87	6	54	28	2	6	62	1.33
1215162--1215204	15	3.0	15	90	6	63	37	4	2	55	1.33
1219063--1219123	19	3.2	19	83	4	86	59	14	0	26	1.36
1219060--1219120	20	3.1	20	83	4	88	59	16	0	24	1.37
1241606--1241644	18	2.2	18	90	9	62	48	5	0	46	1.24
1244893--1245027	60	2.3	59	83	8	170	38	8	9	43	1.67
1254192--1254254	24	2.6	24	71	0	63	15	25	26	31	1.96
1255790--1255872	43	1.9	43	97	0	157	31	22	21	24	1.98
1255832--1255996	51	3.2	51	87	2	233	26	26	21	26	1.99
1255957--1256089	51	2.6	51	87	0	194	30	23	16	30	1.96
1255832--1256093	102	2.6	102	79	3	251	28	25	19	27	1.99
1266121--1266146	2	13.0	2	100	0	52	50	0	0	50	1.00
1266656--1266703	21	2.2	23	85	7	64	52	0	12	35	1.40
1267444--1267471	13	2.2	13	100	0	56	71	0	7	21	1.09
1267793--1267844	21	2.3	23	83	6	63	36	9	0	53	1.34
1268199--1268228	11	2.7	11	100	0	60	30	6	20	43	1.77
1270337--1270370	16	2.1	17	94	5	61	32	5	26	35	1.81
1271120--1271152	15	2.1	16	88	5	50	51	15	24	9	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1280641--1280688	18	2.7	17	84	9	60	60	2	0	37	1.09
1281585--1281793	117	1.8	115	87	6	316	25	14	6	53	1.66
1282013--1282059	18	2.5	19	76	13	53	46	4	0	48	1.21
1282417--1282477	32	1.9	32	93	6	106	42	1	11	44	1.50
1283444--1283480	17	2.1	18	90	5	58	13	8	13	64	1.48
1283886--1283955	36	2.0	36	88	2	106	37	5	11	45	1.64
1287980--1288028	22	2.2	22	85	7	64	61	28	4	6	1.38
1293288--1293313	12	2.2	12	100	0	52	76	0	7	15	0.99
1293781--1293826	24	1.9	24	86	8	67	6	8	6	78	1.10
1296226--1296324	30	3.3	29	82	14	114	39	10	12	38	1.76
1315889--1315936	16	2.9	16	81	6	60	45	14	0	39	1.45
1327464--1327660	107	1.8	108	92	1	333	49	4	3	42	1.40
1327638--1327668	16	1.9	16	93	0	53	64	0	0	35	0.94
1328498--1328531	2	17.0	2	93	0	59	50	2	0	47	1.16
1331746--1331782	20	1.9	19	89	10	58	45	10	24	18	1.81
1336501--1336681	20	8.9	20	76	11	136	40	22	20	17	1.91
1336585--1336694	42	2.7	40	91	5	184	38	24	20	16	1.93
1336539--1336680	62	2.3	63	85	9	195	39	23	21	15	1.91
1336559--1336681	62	2.0	62	93	3	212	37	24	21	17	1.94
1336563--1336694	20	6.4	20	78	11	142	37	25	20	16	1.93
1336805--1336855	6	8.5	6	100	0	102	33	50	15	0	1.44
1337598--1337642	6	7.5	6	100	0	90	0	15	51	33	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1337753--1337984	20	11.4	20	81	9	229	17	21	24	37	1.94
1337753--1337988	40	5.8	40	88	4	312	16	21	24	37	1.93
1337753--1337984	60	3.8	61	82	6	274	17	21	24	37	1.94
1337753--1338045	62	4.8	63	78	10	249	16	20	23	39	1.92
1337995--1338043	19	2.5	20	90	9	50	16	18	22	42	1.88
1339457--1339487	2	15.5	2	100	0	62	51	0	0	48	1.00
1341576--1341665	2	45.0	2	97	0	171	50	1	0	48	1.08
1342684--1342726	20	2.2	20	83	8	52	46	6	0	46	1.30
1358875--1358983	5	22.8	5	93	5	174	21	14	21	43	1.88
1367640--1367682	20	2.0	22	86	8	63	53	4	0	41	1.21
1367854--1367911	25	2.4	24	81	16	66	55	0	1	43	1.10
1371131--1371222	31	3.0	31	95	0	157	32	5	6	55	1.48
1372189--1372263	30	2.5	31	88	4	116	49	10	8	32	1.66
1387336--1387361	2	13.0	2	100	0	52	50	0	0	50	1.00
1389596--1389667	36	2.0	36	97	0	135	30	26	22	20	1.98
1391864--1392087	112	2.0	113	81	8	260	28	10	4	56	1.54
1405362--1405406	23	2.0	23	90	0	72	22	15	31	31	1.95
1406790--1406831	21	2.0	20	90	9	66	11	9	11	66	1.44
1407645--1407717	30	2.4	31	83	4	103	21	8	15	54	1.66
1413257--1413344	38	2.4	37	86	5	115	14	12	34	38	1.84
1413494--1413524	5	6.2	5	100	0	62	0	19	58	22	1.40
1414435--1414524	28	3.2	28	84	3	108	18	26	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1416550--1416596	20	2.3	20	92	0	76	53	6	14	25	1.65
1421751--1421781	10	3.1	10	95	0	53	54	0	6	38	1.26
1423903--1423950	15	3.2	15	90	0	69	10	16	62	10	1.53
1425082--1425137	26	2.2	26	87	3	78	33	8	10	46	1.70
1425092--1425153	26	2.4	26	94	0	106	30	11	8	50	1.67
1429801--1429834	16	2.1	17	88	5	52	64	0	0	35	0.94
1430560--1430591	2	15.5	2	93	6	55	46	3	0	50	1.17
1437972--1438057	26	3.3	26	73	20	72	40	4	2	52	1.35
1438217--1438290	26	2.8	27	76	17	75	48	4	1	45	1.29
1443283--1443321	19	2.1	19	85	9	53	38	12	0	48	1.42
1443302--1443461	60	2.7	59	83	2	178	31	21	5	41	1.75
1457569--1457628	30	2.0	30	100	0	120	16	23	16	43	1.87
1466794--1466822	12	2.4	12	100	0	58	0	41	31	27	1.56
1468255--1468293	20	2.0	20	89	0	60	25	7	20	46	1.77
1468859--1468899	21	1.9	22	85	5	57	41	9	14	34	1.79
1477556--1477669	59	1.9	59	83	5	149	42	8	7	40	1.65
1480820--1481223	171	2.3	171	87	3	562	27	18	28	25	1.98
1485839--1485885	23	2.1	23	92	4	78	65	23	4	6	1.33
1485842--1485889	22	2.1	23	88	3	71	68	22	4	4	1.24
1486726--1486754	6	4.8	6	100	0	58	17	17	65	0	1.27
1486829--1486870	2	21.5	2	95	4	77	50	0	0	50	1.00
1486829--1486875	8	6.3	7	95	4	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1486950--1486984	12	2.9	12	95	0	61	28	51	11	8	1.67
1490224--1490288	30	2.1	31	85	2	87	61	10	9	18	1.54
1490916--1491094	29	6.2	28	68	18	93	58	1	5	35	1.28
1490928--1491086	86	1.8	86	83	10	209	58	1	5	35	1.28
1492104--1492176	29	2.5	29	97	0	137	39	5	23	31	1.77
1492236--1492284	22	2.2	22	96	0	89	38	6	0	55	1.25
1493054--1493087	5	6.4	5	90	10	50	44	0	0	55	0.99
1494648--1494734	42	2.1	42	97	0	165	32	17	11	39	1.85
1494978--1495052	21	3.5	20	76	18	64	40	1	0	58	1.06
1495703--1495735	16	2.1	16	88	11	50	72	0	0	27	0.85
1495702--1495761	22	2.7	21	75	17	59	66	0	0	33	0.92
1501023--1501085	26	2.5	26	80	10	78	57	3	3	36	1.31
1505335--1505387	22	2.5	22	93	3	90	22	18	28	30	1.98
1508296--1508340	21	2.1	21	87	0	63	31	28	24	15	1.96
1508768--1508824	20	2.7	22	78	15	66	43	5	14	36	1.67
1509354--1509540	31	6.0	31	93	1	313	20	18	22	39	1.93
1526747--1526868	42	2.9	43	85	4	158	21	22	13	41	1.88
1532000--1532062	32	2.0	32	96	0	117	34	15	9	39	1.80
1536361--1536398	20	1.9	20	84	10	51	44	0	13	42	1.43
1537053--1537091	14	2.6	14	88	8	51	38	5	2	53	1.37
1537345--1537383	10	4.0	10	84	15	55	41	0	0	58	0.98
1537454--1537532	28	3.3	24	72	27	71	51	0	1	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1537507--1537565	19	3.2	18	74	11	57	54	1	0	44	1.10
1539493--1539537	22	2.0	23	91	4	74	37	0	15	46	1.46
1554488--1554739	54	4.7	54	85	1	317	34	21	15	28	1.94
1557102--1557174	30	2.4	30	95	0	128	30	24	20	24	1.99
1562126--1562225	30	3.3	30	87	1	128	33	25	18	24	1.97
1567802--1567855	26	2.1	26	96	0	99	35	7	11	46	1.67
1568367--1568408	19	2.2	20	86	4	59	38	4	0	57	1.20
1568501--1568566	20	3.3	21	81	8	68	36	0	3	60	1.12
1568495--1568551	21	2.7	21	78	8	62	36	0	1	61	1.07
1571730--1571766	13	2.8	13	100	0	74	35	8	8	48	1.62

Tables:   1   2   3   4   5   6   7