genome.fa.s9086.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009086.1 Hibiscus syriacus cultivar Beakdansim tig00112530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1596699

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 761 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572223--1572262	21	1.9	21	94	0	71	17	25	17	40	1.91
1572217--1572269	21	2.5	21	84	0	70	20	26	18	33	1.96
1572259--1572371	20	5.7	20	94	0	199	39	19	18	22	1.92
1572259--1572389	60	2.2	60	91	2	210	38	20	19	22	1.94
1572259--1572389	40	3.3	40	86	8	187	38	20	19	22	1.94
1572565--1572630	22	3.0	22	79	0	78	27	36	13	22	1.92
1574930--1575023	33	2.8	34	81	3	118	45	22	18	13	1.84
1574979--1575012	14	2.4	15	85	14	54	55	23	11	8	1.63
1574997--1575044	20	2.4	20	85	0	69	39	25	14	20	1.91
1575090--1575176	20	4.3	20	94	0	138	26	19	20	33	1.97
1575642--1575733	42	2.2	42	82	3	105	25	35	17	21	1.95
1577031--1577066	14	2.6	14	90	0	54	30	0	22	47	1.52
1577172--1577267	33	2.8	33	90	3	138	43	20	22	12	1.86
1577304--1577389	14	5.5	14	69	22	55	15	23	18	43	1.88
1577283--1577409	33	3.8	33	86	4	166	14	22	19	43	1.88
1577381--1577469	20	4.4	20	91	2	144	16	22	25	34	1.95
1579894--1579947	24	2.2	24	90	0	81	42	20	16	20	1.89
1580789--1580835	20	2.3	20	92	0	76	21	19	27	31	1.97
1580822--1580955	20	6.7	20	87	1	196	20	20	20	38	1.93
1580953--1580992	21	1.9	21	94	0	71	47	17	15	20	1.83
1581538--1581584	14	3.2	15	82	11	53	46	0	2	51	1.13
1581593--1581643	22	2.4	21	87	9	68	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581593--1581649	21	2.7	21	86	8	71	63	0	1	35	1.05
1586805--1587012	21	10.1	21	74	6	174	18	19	25	36	1.95
1586833--1587012	41	4.4	41	92	2	299	18	20	24	36	1.95
1586861--1587009	20	7.3	20	74	7	147	16	21	24	38	1.93
1586833--1587037	82	2.5	82	92	2	331	18	20	23	37	1.94
1586861--1587037	41	4.3	40	88	7	216	16	21	23	38	1.93
1587131--1587163	6	5.5	6	100	0	66	33	51	15	0	1.43
1587787--1587933	20	7.6	19	65	21	74	38	25	21	15	1.92
1587762--1587839	21	3.7	21	75	11	79	34	26	21	16	1.95
1587784--1587999	41	5.5	41	85	9	288	37	25	19	18	1.94
1587784--1587998	74	2.8	77	88	7	285	37	25	19	18	1.93
1587881--1587995	21	5.6	21	68	4	99	35	26	18	20	1.95
1588032--1588137	20	5.2	20	66	16	65	35	26	18	18	1.95
1588039--1588141	41	2.5	41	91	0	161	37	26	18	17	1.93
1587881--1588177	142	2.1	143	89	1	472	34	23	21	20	1.97
1588289--1588375	35	2.5	34	80	12	97	54	10	8	27	1.62
1592658--1592726	30	2.3	30	92	0	111	37	13	14	34	1.85
1594369--1594403	16	2.1	17	94	5	63	31	8	25	34	1.86
1595137--1595169	15	2.1	16	88	5	50	51	15	24	9	1.72

Tables:   1   2   3   4   5   6   7

The End!