genome.fa.s9086.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009086.1 Hibiscus syriacus cultivar Beakdansim tig00112530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1596699

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 761 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791107--791151	23	2.0	23	86	0	63	26	26	26	20	1.99
791266--791334	25	2.8	25	93	0	120	28	26	26	18	1.98
792903--793063	64	2.5	63	82	8	173	27	20	17	34	1.95
802139--802211	32	2.3	32	95	0	128	35	9	15	39	1.80
804170--804846	338	2.0	337	99	0	1336	36	19	17	26	1.94
815628--815709	27	3.0	27	90	0	137	31	24	28	15	1.96
815630--815750	27	4.2	30	82	3	110	26	26	33	14	1.94
815740--815847	27	3.7	27	74	20	99	30	22	36	11	1.89
815747--815819	36	2.0	36	91	0	119	30	21	35	12	1.90
815740--815874	63	2.1	63	91	0	216	31	22	35	11	1.89
815783--815846	27	2.4	26	94	5	110	28	23	37	10	1.89
819130--819162	16	2.1	16	100	0	66	45	18	6	30	1.73
824206--824250	14	3.2	14	93	0	81	37	20	13	28	1.90
826559--826716	21	7.8	20	72	7	86	38	25	17	18	1.92
826683--826834	40	3.8	40	81	7	164	38	25	16	19	1.92
826683--826836	20	7.7	20	77	7	141	38	25	16	18	1.92
827219--827289	33	2.2	33	92	0	115	11	22	18	47	1.80
827369--827478	21	5.8	20	74	17	108	45	18	24	11	1.83
827362--827478	41	3.1	38	81	14	145	46	17	25	11	1.81
827429--827485	14	3.7	14	75	20	60	43	22	24	8	1.81
827421--827501	33	2.5	33	95	0	144	46	22	22	8	1.78
827497--827580	19	4.7	19	81	14	115	10	22	21	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
827538--827594	14	3.7	14	75	20	60	8	24	22	43	1.81
827519--827602	33	2.5	33	100	0	168	9	23	20	46	1.80
829301--829583	93	3.1	93	98	0	550	22	12	19	45	1.83
829631--829759	19	7.3	19	74	17	116	46	28	16	8	1.76
829667--829759	33	2.8	32	90	4	141	47	27	17	7	1.74
829631--829759	52	2.5	52	74	14	140	46	28	16	8	1.76
829755--829873	19	6.8	18	74	19	110	8	19	25	47	1.77
829777--829833	14	3.7	14	72	20	51	7	19	28	45	1.76
829760--829852	33	2.8	33	91	0	159	8	19	24	47	1.77
829755--829889	19	7.6	19	73	20	105	9	18	25	45	1.80
831814--831849	14	2.6	14	95	0	63	33	0	22	44	1.53
831956--832053	19	5.4	19	84	13	143	45	17	21	15	1.84
831956--832072	53	2.2	53	95	1	209	43	17	23	14	1.87
832062--832264	19	11.7	19	73	20	194	14	22	18	44	1.86
832062--832236	52	3.3	52	96	0	314	14	23	17	44	1.85
832068--832278	33	6.2	33	76	14	214	13	22	18	45	1.84
834759--834805	24	2.0	24	87	8	69	38	21	14	25	1.92
835488--835717	20	11.5	20	85	1	237	20	17	25	36	1.94
836090--836125	2	18.0	2	100	0	72	50	0	0	50	1.00
842115--842153	19	2.1	19	95	0	69	20	38	15	25	1.92
842101--842261	65	2.5	65	84	3	200	29	25	16	28	1.96
848120--848162	22	2.0	22	100	0	86	9	23	48	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
848161--848258	19	5.1	19	80	13	101	29	27	25	17	1.97
848159--848257	9	10.3	9	80	10	90	29	27	27	16	1.97
848165--848257	29	3.2	26	82	8	51	30	27	25	16	1.96
852036--852079	21	2.1	21	86	0	61	9	36	15	38	1.80
853057--853266	65	3.2	64	79	10	214	30	25	17	27	1.97
853057--853286	64	3.6	64	80	8	218	29	25	17	27	1.98
855861--855906	17	2.7	17	100	0	92	60	0	0	39	0.97
859694--859760	23	2.9	23	86	0	98	29	25	26	17	1.98
860979--861012	9	3.6	10	88	11	54	52	17	0	29	1.45
860983--861029	19	2.6	19	83	6	53	53	23	0	23	1.47
866362--866395	16	2.1	16	88	5	50	79	8	0	11	0.94
867308--867374	30	2.3	30	97	2	127	38	10	19	31	1.85
868723--868750	2	14.0	2	100	0	56	0	50	0	50	1.00
871315--871391	34	2.3	33	86	4	118	24	6	15	53	1.66
871716--871815	51	2.0	51	89	0	155	30	14	30	26	1.94
875600--875630	13	2.4	13	88	0	53	12	12	35	38	1.82
886718--886753	16	2.2	16	90	0	54	27	8	0	63	1.23
887833--887863	6	5.2	6	100	0	62	0	16	0	83	0.64
889061--889128	31	2.2	31	89	0	100	45	17	16	20	1.85
892343--892401	29	2.0	29	90	0	91	23	15	18	42	1.88
895368--895418	23	2.2	23	79	6	59	43	19	15	21	1.88
912985--913035	20	2.5	20	93	0	84	50	9	17	21	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913330--913778	224	2.0	225	96	0	819	41	12	14	32	1.83
914216--914259	18	2.3	20	80	11	56	70	2	2	25	1.10
915262--915341	35	2.3	34	83	12	92	45	18	1	35	1.58
915842--916111	148	1.8	148	89	0	423	48	8	5	37	1.57
916244--916320	35	2.2	35	88	0	109	32	1	23	42	1.62
919738--919779	22	2.0	21	85	4	57	16	16	26	40	1.90
924124--924196	20	3.9	20	73	23	86	21	35	28	13	1.92
924140--924224	34	2.5	35	96	1	154	20	35	27	17	1.95
924167--924223	15	3.5	15	72	25	53	19	36	24	19	1.94
924335--924376	21	2.0	21	95	0	75	23	16	28	30	1.96
927699--927738	20	2.0	20	90	9	64	17	35	30	17	1.93
927704--927786	33	2.5	34	80	5	107	20	33	26	19	1.96
927898--927939	21	2.0	21	90	0	66	23	23	28	23	2.00
941593--941643	12	4.2	12	94	0	93	33	9	17	39	1.83
945367--945393	14	1.9	14	100	0	54	48	22	14	14	1.81
949142--949177	14	2.6	14	100	0	72	36	13	33	16	1.89
951597--951660	22	2.9	22	85	0	83	39	10	15	34	1.83
974025--974410	55	7.1	54	78	11	332	32	22	15	30	1.95
974053--974410	162	2.2	160	83	7	456	31	22	15	30	1.95
974425--974496	37	2.0	36	88	2	108	22	20	19	37	1.94
975765--975845	7	11.1	7	79	11	65	8	14	0	76	1.01
975771--975841	22	3.1	23	83	15	85	8	14	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975765--975848	29	2.9	29	87	8	109	9	14	0	76	1.02
975797--975848	7	7.3	7	91	4	86	13	11	0	75	1.06
975796--975855	29	2.1	29	93	0	102	15	11	0	73	1.10
975796--975870	29	2.6	28	87	8	89	16	10	0	73	1.10
985539--985642	45	2.3	46	88	3	156	41	19	7	31	1.79
990328--990404	31	2.5	30	87	2	109	36	10	16	36	1.83
993317--993382	20	3.3	20	83	8	73	39	9	15	36	1.79
999824--999853	9	3.2	9	90	9	51	46	0	0	53	1.00
1000366--1000405	17	2.4	17	87	4	55	45	2	0	52	1.14
1001134--1001179	23	2.0	23	86	4	65	56	0	4	39	1.19
1003037--1003066	5	6.0	5	100	0	60	20	0	0	80	0.72
1003377--1003436	31	1.9	31	89	0	93	30	16	8	45	1.77
1005349--1005762	135	3.0	135	78	10	394	35	22	25	16	1.95
1006230--1006529	162	1.9	162	89	0	474	44	19	21	15	1.87
1006564--1006881	129	2.5	129	89	0	483	40	20	27	11	1.87
1007947--1008019	21	3.5	21	86	1	94	38	16	23	21	1.93
1008008--1008122	20	5.7	20	79	6	97	33	26	14	24	1.94
1008005--1008136	41	3.2	41	81	2	167	37	25	13	23	1.92
1008295--1008338	22	2.0	22	95	0	79	20	40	15	22	1.90
1008585--1008629	20	2.3	19	84	3	54	17	17	26	37	1.93
1008598--1008638	19	2.2	20	91	8	68	9	19	21	48	1.77
1010418--1010462	17	2.6	17	86	6	56	4	2	22	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010515--1010560	20	2.3	20	88	0	65	36	26	21	15	1.93
1010515--1010617	19	5.6	19	73	14	63	41	22	21	14	1.89
1010655--1010709	20	2.8	20	91	2	85	16	27	23	32	1.96
1011057--1011117	21	3.0	20	73	7	68	24	42	11	21	1.86
1011054--1011144	41	2.2	42	86	2	130	23	41	14	20	1.89
1012557--1012595	14	2.8	14	84	0	51	35	0	17	46	1.49
1012722--1012775	14	3.5	14	75	22	54	48	22	20	9	1.78
1012732--1012768	19	1.9	19	88	0	56	51	16	21	10	1.74
1012807--1012894	20	4.4	20	80	5	106	15	20	23	39	1.91
1013108--1013198	20	4.5	20	73	2	74	20	17	21	39	1.92

Tables:   1   2   3   4   5   6   7