genome.fa.s9086.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009086.1 Hibiscus syriacus cultivar Beakdansim tig00112530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1596699

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 761 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445735--446019	29	9.6	29	75	14	197	43	13	12	29	1.82
446015--446201	64	2.9	64	84	7	225	45	13	10	30	1.77
446274--446332	31	1.9	31	93	3	102	42	15	13	28	1.85
446441--446759	106	3.1	104	81	6	421	42	11	16	29	1.84
448384--448466	15	5.8	13	70	22	53	3	15	7	73	1.19
448378--448419	19	2.2	19	83	8	50	2	9	9	78	1.05
448384--448476	25	3.9	25	73	17	81	5	15	7	72	1.26
452145--452217	30	2.4	30	88	0	110	56	12	10	20	1.66
453711--453758	3	15.7	3	83	12	62	62	0	2	35	1.07
455267--455315	22	2.1	22	81	7	53	57	2	2	38	1.22
456253--456277	6	4.2	6	100	0	50	0	32	16	52	1.44
456279--456303	13	1.9	13	100	0	50	0	8	4	88	0.64
456825--456890	3	22.0	3	79	11	73	60	1	0	37	1.06
456814--456890	24	3.0	25	92	7	120	58	1	0	40	1.06
457015--458417	76	18.5	76	98	0	2673	35	21	21	21	1.96
459993--460039	21	2.2	22	80	7	60	29	27	27	14	1.96
460624--460658	18	1.9	18	88	11	54	54	5	17	22	1.64
461685--461751	22	3.0	22	100	0	134	19	26	26	26	1.99
464880--464926	21	2.2	22	80	7	60	29	27	27	14	1.96
465511--465545	18	1.9	18	88	11	54	54	5	17	22	1.64
466570--466636	22	3.0	22	95	0	125	20	26	25	26	1.99
469693--469891	104	1.9	105	89	1	310	33	20	12	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469906--470212	84	3.7	84	96	0	553	37	21	12	28	1.90
477039--477087	22	2.1	22	81	7	53	57	2	2	38	1.22
478020--478044	6	4.2	6	100	0	50	0	32	16	52	1.44
478591--478662	3	24.0	3	73	16	60	59	1	0	38	1.06
478605--478668	18	3.8	18	75	25	77	59	0	0	40	0.97
478580--478668	30	3.0	31	88	9	125	57	1	0	41	1.06
483961--484039	32	2.4	32	78	15	83	29	1	0	69	0.96
484561--484591	14	2.2	14	100	0	62	19	12	0	67	1.22
488243--488300	30	1.9	30	96	0	107	27	29	24	18	1.98
488968--489002	16	2.1	17	89	5	54	17	0	8	74	1.06
493619--493644	2	13.0	2	100	0	52	50	0	0	50	1.00
498918--498967	18	2.9	16	82	11	55	54	0	0	46	1.00
500762--501721	479	2.0	479	98	0	1875	38	7	12	41	1.73
504975--505010	18	2.0	18	100	0	72	22	27	22	27	1.99
508964--509187	6	37.3	6	97	0	151	50	31	0	18	1.48
508966--509187	18	12.4	18	97	1	403	50	31	0	18	1.48
518350--518381	2	16.0	2	100	0	64	50	0	0	50	1.00
518991--519043	25	2.1	25	82	0	61	35	16	13	33	1.88
529588--529631	7	6.3	7	100	0	88	27	0	45	27	1.54
541255--541283	2	14.5	2	100	0	58	51	0	0	48	1.00
547426--547459	14	2.4	14	95	0	59	55	14	5	23	1.61
550506--550577	30	2.4	29	90	2	108	45	6	15	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550505--550577	15	4.9	15	77	9	78	45	6	16	31	1.74
550915--550971	25	2.3	26	75	9	64	45	1	1	50	1.22
550941--551018	25	3.0	27	75	17	67	52	1	0	46	1.08
550941--551093	28	5.8	25	67	23	75	49	1	0	48	1.17
550957--551110	28	5.4	29	71	24	84	50	1	0	47	1.17
550955--551110	53	2.8	53	72	16	131	49	1	0	48	1.17
551325--551378	27	2.0	27	85	0	72	50	14	14	20	1.78
556674--556752	34	2.4	33	85	8	99	37	0	1	60	1.05
556892--556945	17	3.2	17	72	0	54	31	0	3	64	1.11
558476--558523	21	2.3	21	85	0	60	25	39	12	22	1.89
558527--558599	21	3.5	21	88	7	112	17	34	27	20	1.95
559121--559218	34	2.9	34	87	0	133	55	3	4	37	1.35
559618--560871	127	9.9	128	93	1	1902	33	19	24	22	1.97
559618--560871	255	5.0	255	92	3	1868	33	19	24	22	1.97
560942--560982	8	5.2	8	82	5	57	36	29	0	34	1.58
563882--563928	23	2.0	24	84	12	62	29	2	8	59	1.39
571330--571382	22	2.4	22	81	9	63	50	0	11	37	1.38
582631--582657	2	13.5	2	100	0	54	48	0	0	51	1.00
592225--592302	35	2.2	36	90	2	122	38	1	5	55	1.30
592225--592279	17	3.2	17	70	14	58	38	0	3	58	1.16
600708--600745	18	2.1	18	100	0	76	34	10	34	21	1.87
624505--624691	96	1.9	96	87	0	275	24	36	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628165--628224	18	3.4	18	72	17	54	45	0	1	53	1.10
636564--636644	31	2.6	31	92	0	126	24	18	11	45	1.82
637096--637145	23	2.2	24	78	10	59	50	22	8	20	1.74
637665--637692	2	14.0	2	100	0	56	50	0	0	50	1.00
641403--641430	2	14.0	2	100	0	56	50	0	0	50	1.00
641709--642237	157	3.4	156	86	4	715	46	5	20	27	1.72
663222--663598	150	2.5	149	78	4	418	32	20	20	26	1.97
663258--663662	150	2.7	150	78	4	352	33	18	20	27	1.96
667625--667661	2	18.5	2	100	0	74	0	48	0	51	1.00
671004--671064	27	2.3	27	80	8	70	47	0	3	49	1.18
671143--671307	80	2.1	80	86	3	226	41	21	2	33	1.66
675051--675110	29	2.1	29	90	0	93	35	30	23	11	1.90
675101--675183	40	2.1	40	95	0	148	21	13	43	21	1.87
676289--676333	21	2.1	21	87	0	63	22	22	24	31	1.99
677656--678428	382	2.0	383	98	0	1485	37	15	15	31	1.88
685246--685370	60	2.1	60	83	3	153	36	14	16	32	1.88
691414--691461	23	2.1	22	81	11	53	16	22	10	50	1.76
693394--693485	45	2.0	47	93	6	161	38	18	3	40	1.67
693835--693909	30	2.5	30	100	0	150	24	17	17	41	1.90
695329--695416	28	3.1	28	63	18	74	28	12	10	48	1.73
695329--695442	56	2.0	56	98	0	219	28	14	12	43	1.82
707702--707756	19	2.9	18	81	10	65	41	10	16	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709224--709258	17	2.1	17	89	5	54	54	0	2	42	1.15
710108--710137	2	15.5	2	93	6	53	53	0	0	46	1.00
710110--710135	13	2.0	13	100	0	52	53	0	0	46	1.00
710108--710137	15	2.0	15	100	0	60	53	0	0	46	1.00
716982--717042	28	2.1	28	85	8	79	47	14	8	29	1.73
730238--730287	4	12.2	4	91	8	75	28	0	22	50	1.49
731351--731421	29	2.4	30	81	9	92	39	8	18	33	1.81
733629--733653	7	3.6	7	100	0	50	28	16	16	40	1.89
742362--742425	20	3.2	20	68	4	56	35	17	4	42	1.70
742584--742659	39	2.0	37	85	7	100	52	11	10	25	1.69
749504--749586	10	7.7	10	72	15	67	15	10	13	60	1.59
749508--749664	23	7.2	23	78	10	161	13	10	15	60	1.58
749523--749664	43	3.2	43	89	3	203	12	9	16	60	1.58
752799--752847	21	2.3	21	80	13	64	36	8	8	46	1.63
753471--753511	2	20.5	2	100	0	82	48	0	0	51	1.00
754006--754096	44	2.1	44	93	0	155	45	3	10	40	1.56
760430--760511	39	2.2	37	91	4	128	48	20	12	18	1.79
762765--762862	51	1.9	51	81	4	117	52	2	4	41	1.32
762829--762884	28	2.0	28	86	3	78	62	3	3	30	1.29
763614--763650	17	2.2	17	90	0	56	51	0	2	45	1.15
765716--765760	22	2.1	21	87	4	63	15	13	11	60	1.60
770153--770196	20	2.2	20	92	8	72	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771531--771622	28	3.4	28	86	4	125	40	9	9	40	1.71
771531--771622	27	3.4	27	82	10	107	40	9	9	40	1.71
771704--771810	30	3.7	30	74	12	107	41	8	8	42	1.65
781669--781701	2	16.5	2	100	0	66	48	0	0	51	1.00
782175--782201	2	13.5	2	100	0	54	48	0	0	51	1.00
784232--784313	24	3.5	24	83	3	112	36	18	17	28	1.93
784238--784306	23	2.9	24	82	2	86	36	18	15	28	1.92
785765--785809	23	2.0	23	86	0	63	26	26	26	20	1.99
785929--785994	25	2.6	25	100	0	132	28	24	30	16	1.97
787565--787725	64	2.5	63	83	8	182	26	22	17	33	1.96

Tables:   1   2   3   4   5   6   7