genome.fa.s9266.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009266.1 Hibiscus syriacus cultivar Beakdansim tig00112921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1543912

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214602--214635	11	3.1	11	82	0	50	23	23	11	41	1.87
229852--229908	10	6.0	10	88	10	66	84	0	15	0	0.63
229851--229932	4	21.5	4	74	20	70	78	0	19	2	0.87
229851--229932	18	4.8	18	88	10	111	78	0	19	2	0.87
229858--229916	22	2.8	22	87	12	81	81	0	18	0	0.69
230524--230554	13	2.4	13	94	0	53	25	19	19	35	1.95
231960--232051	42	2.2	41	84	1	112	23	19	21	34	1.96
231630--232662	233	4.4	232	86	2	1358	32	16	17	33	1.92
233013--233379	133	2.7	134	84	0	502	31	25	14	29	1.95
233283--233459	92	1.9	93	87	3	259	29	25	16	28	1.97
233582--233619	3	12.3	3	84	15	51	28	2	2	65	1.19
236620--236652	14	2.5	14	90	9	52	57	0	0	42	0.98
237308--237354	5	9.4	5	78	17	53	19	2	2	76	0.99
246609--246677	20	3.5	19	76	7	66	31	21	14	31	1.93
246755--247173	37	11.6	37	82	7	424	38	18	17	25	1.92
247045--247140	30	3.0	30	85	10	120	38	18	18	23	1.93
247045--247173	66	2.0	66	92	0	213	36	18	20	24	1.95
247351--247397	5	9.2	5	82	13	60	40	0	0	59	0.97
247351--247399	3	16.7	3	76	19	50	40	0	0	59	0.98
247351--247405	21	2.8	21	91	8	89	41	0	0	58	0.98
253335--253373	3	13.0	3	100	0	78	66	0	0	33	0.92
253992--254201	100	2.1	100	97	0	393	40	10	7	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278170--278256	35	2.5	34	80	12	97	55	10	8	26	1.61
278840--278877	18	2.1	18	90	0	58	23	13	31	31	1.93
289048--289178	23	5.7	23	82	5	126	19	22	23	34	1.96
289905--289957	13	4.1	13	79	16	65	45	1	1	50	1.23
290323--290349	7	3.9	7	100	0	54	14	0	40	44	1.46
291033--291073	20	2.1	19	86	4	55	70	4	17	7	1.28
291034--291091	27	2.1	27	83	3	71	72	3	15	8	1.23
291176--291201	2	13.0	2	100	0	52	50	0	0	50	1.00
302545--302621	28	2.8	28	84	2	84	20	18	6	54	1.65
302806--302861	21	2.7	20	75	5	58	55	5	7	32	1.50
302911--302940	14	2.1	14	93	0	51	70	6	0	23	1.11
305658--305694	20	2.0	20	84	10	51	35	8	8	48	1.62
306539--306592	20	2.7	20	80	8	65	50	14	7	27	1.70
307730--307804	31	2.4	32	80	13	84	30	14	18	36	1.91
312647--312691	23	2.0	23	86	0	63	24	15	20	40	1.91
312692--312762	24	3.0	24	97	0	133	18	25	21	35	1.95
315640--315688	23	2.1	24	84	3	64	24	18	24	32	1.97
319730--319795	23	3.0	22	80	12	73	24	19	27	28	1.99
335783--335830	21	2.3	21	81	0	60	35	18	18	27	1.95
340562--340595	17	2.0	17	88	0	50	52	32	0	14	1.42
342594--342631	20	1.9	20	88	0	58	13	26	36	23	1.91
349903--349929	13	2.1	13	100	0	54	40	22	29	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359921--360079	52	3.0	52	88	7	216	24	15	12	47	1.80
360024--360180	82	1.9	82	92	0	260	21	21	11	45	1.83
361779--361805	3	9.0	3	100	0	54	66	0	0	33	0.92
362058--362118	20	3.0	20	75	13	70	29	21	13	36	1.91
369587--369692	55	1.9	55	92	0	176	42	9	23	24	1.83
369595--369709	55	2.1	55	85	0	149	44	12	21	21	1.85
373205--373431	125	1.8	125	85	1	321	33	14	26	25	1.95
374638--374751	37	3.1	37	89	2	176	33	23	17	25	1.96
374638--374777	37	3.8	36	83	4	156	32	22	20	24	1.97
374638--374777	73	1.9	73	85	2	192	32	22	20	24	1.97
375137--375462	54	6.1	54	93	0	564	36	19	26	17	1.94
375466--375774	55	5.7	55	84	7	382	30	14	25	30	1.95
375469--375774	164	1.9	165	84	7	417	30	14	25	29	1.95
381245--381271	7	3.9	7	100	0	54	0	44	29	25	1.54
383477--383577	24	4.2	24	96	0	166	22	27	31	17	1.97
386025--386062	15	2.5	15	86	0	58	28	7	31	31	1.86
386347--386397	17	2.9	18	82	11	61	45	9	11	33	1.74
387528--387555	2	14.0	2	100	0	56	50	0	0	50	1.00
388317--388383	32	2.1	32	97	0	125	52	20	0	26	1.47
388833--388870	15	2.7	14	84	11	51	39	18	0	42	1.50
393230--393281	17	3.1	17	75	10	52	40	3	9	46	1.55
393208--393299	34	2.7	34	75	9	100	40	8	10	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394617--394645	3	10.0	3	92	7	51	34	0	0	65	0.93
394617--394643	14	1.9	14	100	0	54	33	0	0	66	0.92
402115--402148	16	2.1	16	94	0	59	50	26	0	23	1.50
402438--402549	36	3.2	35	74	11	111	31	16	9	41	1.81
402918--403004	30	3.0	27	74	15	84	28	12	13	44	1.81
403308--403365	28	2.1	28	83	6	73	27	13	13	44	1.82
403848--403898	3	17.7	3	92	8	88	33	0	0	66	0.92
405730--405771	22	1.9	23	85	9	61	23	0	2	73	0.94
405740--405764	12	2.1	12	100	0	50	24	0	0	76	0.80
405738--405771	15	2.2	16	89	5	52	23	0	0	76	0.79
405730--405778	23	2.2	21	82	7	53	26	0	4	69	1.06
412053--412108	26	2.2	26	86	0	76	33	21	21	23	1.97
413135--413185	20	2.5	20	78	6	50	41	15	21	21	1.90
413222--413278	22	2.7	21	84	12	73	33	14	22	29	1.93
413832--414871	81	12.9	81	89	1	1480	36	11	22	30	1.89
413832--414826	404	2.5	404	89	1	1512	36	11	22	30	1.89
413832--414871	485	2.1	484	93	1	1753	36	11	22	30	1.89
415957--416005	21	2.4	20	90	10	73	32	6	24	36	1.80
420975--421046	20	3.5	20	80	15	69	31	12	25	30	1.92
421605--421632	2	14.0	2	100	0	56	50	0	0	50	1.00
421724--422467	81	9.2	80	88	2	1001	36	11	22	30	1.89
421724--422512	243	3.3	242	87	2	1138	36	10	22	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423596--423644	21	2.4	20	90	10	73	32	6	24	36	1.80
428613--428684	20	3.5	20	80	15	69	31	12	25	30	1.92
429246--429271	2	13.0	2	100	0	52	50	0	0	50	1.00
429522--429597	24	3.2	23	74	7	71	23	21	19	35	1.96
439166--439215	21	2.4	21	87	9	68	32	10	22	36	1.87
441790--441863	31	2.4	31	83	0	94	24	20	20	35	1.96
441790--441877	31	2.8	30	79	3	86	26	19	19	35	1.95
442229--442864	8	80.8	8	91	2	833	25	10	24	39	1.86
445627--446086	8	58.8	8	86	8	581	40	23	10	26	1.86
446429--446524	31	3.1	31	77	3	95	35	21	16	26	1.95
449102--449151	21	2.4	21	87	9	68	36	22	10	32	1.87
457339--457394	24	2.2	26	75	18	62	51	14	10	23	1.73
457348--457403	24	2.3	24	87	0	85	50	16	8	25	1.74
457621--457666	16	2.8	16	90	3	65	63	4	10	21	1.44
463954--464003	21	2.4	21	93	0	82	24	26	28	22	1.99
465047--465110	21	3.4	20	66	29	59	31	4	18	45	1.70
465039--465160	35	3.4	36	87	6	176	32	4	18	43	1.72
468600--468649	21	2.4	21	93	0	82	24	26	28	22	1.99
469693--469756	21	3.4	20	66	29	59	31	4	18	45	1.70
469685--469806	35	3.4	36	87	6	176	32	4	18	43	1.72
476835--476863	15	1.9	15	100	0	58	13	34	27	24	1.93
482816--482892	31	2.5	31	76	2	82	27	31	25	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493513--493547	17	1.9	19	88	11	56	25	34	8	31	1.86
493724--493750	14	1.9	14	100	0	54	7	37	0	55	1.28
496273--496492	56	3.9	56	85	4	291	35	13	19	30	1.91
496273--496492	111	2.0	113	85	3	302	35	13	19	30	1.91
507706--507756	18	2.8	18	96	0	93	19	11	47	21	1.81
514620--514673	20	2.8	20	82	2	65	25	7	11	55	1.61
523910--524679	383	2.0	383	98	0	1495	27	22	15	34	1.94
526515--526691	90	2.0	89	94	1	309	45	5	10	38	1.63
529449--529495	2	23.5	2	95	0	85	48	0	0	51	1.00
531194--531480	81	3.6	81	86	3	391	36	10	21	31	1.87

Tables:   1   2   3   4   5   6   7